Trimin1|156432|gw1.44.142.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|156432
Unique NameTrimin1|156432|gw1.44.142.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length245
Homology
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BLAST of jgi.p|Trimin1|156432 vs. uniprot
Match: A0A835YS28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS28_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.680e-23
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 
Query:    1 LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ 105
            LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ
Sbjct:    1 LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156432 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS28_9STRA3.680e-23100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026906BspA type Leucine rich repeat regionPFAMPF13306LRR_5coord: 113..203
e-value: 0.26
score: 11.3
coord: 2..76
e-value: 0.064
score: 13.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 62..245
e-value: 1.0E-42
score: 147.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..61
e-value: 1.3E-9
score: 38.9
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 128..245
coord: 4..99
coord: 64..144
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 6..245

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:50019..50783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156432mRNA_9059Tribonema minus UTEX_B_3156 mRNAContig_44 50019..50783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|156432|gw1.44.142.1 ID=Trimin1|156432|gw1.44.142.1|Name=jgi.p|Trimin1|156432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
LSFLGCRALQSVPESIGNLTGLTSLDFSGCRELRCVPREMYKLTNLTSLD
FTGCQALQSVYLKHLEKLTALKLEGCCWALNSVPESISKLTGLTRLDFRE
WLMLQSVPESIGNLTSLTSLSFSECMRLQSVSESIGGLIGLTSLEFNRRE
ALQSVPVSIGGLTGLTSLGFRKCEALQSVPESIGGLTGLTSLDFCECEAL
QSVPESIGGLTGLTSLDFCECEALQSVPESICNLTGLTSLDLIKC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026906LRR_5
IPR032675LRR_dom_sf