mRNA_9059 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156432
Unique NamemRNA_9059
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156432 vs. uniprot
Match: A0A835YS28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS28_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.680e-23
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ 315
            LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ
Sbjct:    1 LSFLGCRALQSVPESIGNLTGLTSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSVYLKHLEKLTALKLEGCCWALNXXXXXXXXXXXXXXXXFREWLMLQ 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YS28_9STRA3.680e-23100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:50019..50783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156432|gw1.44.142.1
Hectar predicted targeting categoryother localisation
TranscriptId156754
TrackFilteredModels1
ProteinId156432
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156432gene_9059Tribonema minus UTEX_B_3156 geneContig_44 50019..50783 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9059_1exon_9059_1Tribonema minus UTEX_B_3156 exonContig_44 50019..50246 +
exon_9059_2exon_9059_2Tribonema minus UTEX_B_3156 exonContig_44 50277..50783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9059CDS_9059Tribonema minus UTEX_B_3156 CDSContig_44 50019..50246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156432Trimin1|156432|gw1.44.142.1Tribonema minus UTEX_B_3156 polypeptideContig_44 50019..50783 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9059 ID=mRNA_9059|Name=jgi.p|Trimin1|156432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_44:50019..50783+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTAGTTTCCTTGGGTGCCGTGCGCTGCAGAGTGTGCCTGAGTCCATAGG
CAATCTGACGGGCCTCACAAGCCTTGATTTCAGTGGGTGCAGGGAGCTCC
GGTGCGTGCCTCGGGAGATGTATAAGCTCACCAATCTCACGAGCCTTGAT
TTCACTGGGTGCCAGGCGCTCCAGAGCGTGTATTTAAAGCACTTAGAAAA
ACTCACAGCCCTAAAATTAGAAGGCTGTTGCTGGGCGCTCAACAGCGTGC
CTGAGTCCATAAGCAAGCTCACCGGTCTCACACGCCTTGATTTCCGCGAG
TGGCTCATGCTTCAGAGCGTGCCTGAGTCCATAGGCAATCTGACCAGCCT
CACAAGCCTTTCTTTCTCTGAGTGCATGAGGCTCCAGAGCGTGTCTGAGT
CCATAGGCGGCCTTATCGGCCTCACAAGCCTGGAATTCAACAGGCGTGAG
GCGCTCCAGAGCGTGCCTGTGTCGATAGGCGGCCTCACCGGCCTTACAAG
CCTTGGTTTCCGTAAGTGTGAGGCGCTCCAGAGCGTGCCTGAGTCCATAG
GCGGCCTCACCGGCCTCACAAGCCTTGATTTCTGTGAGTGTGAGGCGCTC
CAGAGCGTGCCTGAGTCGATTGGCGGCCTCACTGGCCTCACAAGCCTTGA
TTTCTGTGAGTGTGAGGCGCTCCAGAGCGTGCCTGAGTCCATATGCAACC
TCACCGGCCTCACAAGCCTTGACCTGATCAAATGC
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protein sequence of jgi.p|Trimin1|156432

>Trimin1|156432|gw1.44.142.1 ID=Trimin1|156432|gw1.44.142.1|Name=jgi.p|Trimin1|156432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
LSFLGCRALQSVPESIGNLTGLTSLDFSGCRELRCVPREMYKLTNLTSLD
FTGCQALQSVYLKHLEKLTALKLEGCCWALNSVPESISKLTGLTRLDFRE
WLMLQSVPESIGNLTSLTSLSFSECMRLQSVSESIGGLIGLTSLEFNRRE
ALQSVPVSIGGLTGLTSLGFRKCEALQSVPESIGGLTGLTSLDFCECEAL
QSVPESIGGLTGLTSLDFCECEALQSVPESICNLTGLTSLDLIKC
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mRNA from alignment at Contig_44:50019..50783+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9059 ID=mRNA_9059|Name=jgi.p|Trimin1|156432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_44:50019..50783+ (Tribonema minus UTEX_B_3156 )
CTTAGTTTCCTTGGGTGCCGTGCGCTGCAGAGTGTGCCTGAGTCCATAGG
CAATCTGACGGGCCTCACAAGCCTTGATTTCAGTGGGTGCAGGGAGCTCC
GGTGCGTGCCTCGGGAGATGTATAAGCTCACCAATCTCACGAGCCTTGAT
TTCACTGGGTGCCAGGCGCTCCAGAGCGTGTATTTAAAGCACTTAGAAAA
ACTCACAGCCCTAAAATTAGAAGGCTGTGTTGCTCTGACAAGCCTTTCTT
TCCAAAAGTGCTGGGCGCTCAACAGCGTGCCTGAGTCCATAAGCAAGCTC
ACCGGTCTCACACGCCTTGATTTCCGCGAGTGGCTCATGCTTCAGAGCGT
GCCTGAGTCCATAGGCAATCTGACCAGCCTCACAAGCCTTTCTTTCTCTG
AGTGCATGAGGCTCCAGAGCGTGTCTGAGTCCATAGGCGGCCTTATCGGC
CTCACAAGCCTGGAATTCAACAGGCGTGAGGCGCTCCAGAGCGTGCCTGT
GTCGATAGGCGGCCTCACCGGCCTTACAAGCCTTGGTTTCCGTAAGTGTG
AGGCGCTCCAGAGCGTGCCTGAGTCCATAGGCGGCCTCACCGGCCTCACA
AGCCTTGATTTCTGTGAGTGTGAGGCGCTCCAGAGCGTGCCTGAGTCGAT
TGGCGGCCTCACTGGCCTCACAAGCCTTGATTTCTGTGAGTGTGAGGCGC
TCCAGAGCGTGCCTGAGTCCATATGCAACCTCACCGGCCTCACAAGCCTT
GACCTGATCAAATGC
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Coding sequence (CDS) from alignment at Contig_44:50019..50783+

>mRNA_9059 ID=mRNA_9059|Name=jgi.p|Trimin1|156432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_44:50019..50783+ (Tribonema minus UTEX_B_3156 )
CTTAGTTTCCTTGGGTGCCGTGCGCTGCAGAGTGTGCCTGAGTCCATAGG
CAATCTGACGGGCCTCACAAGCCTTGATTTCAGTGGGTGCAGGGAGCTCC
GGTGCGTGCCTCGGGAGATGTATAAGCTCACCAATCTCACGAGCCTTGAT
TTCACTGGGTGCCAGGCGCTCCAGAGCGTGTATTTAAAGCACTTAGAAAA
ACTCACAGCCCTAAAATTAGAAGGCTGTTGCTGGGCGCTCAACAGCGTGC
CTGAGTCCATAAGCAAGCTCACCGGTCTCACACGCCTTGATTTCCGCGAG
TGGCTCATGCTTCAGAGCGTGCCTGAGTCCATAGGCAATCTGACCAGCCT
CACAAGCCTTTCTTTCTCTGAGTGCATGAGGCTCCAGAGCGTGTCTGAGT
CCATAGGCGGCCTTATCGGCCTCACAAGCCTGGAATTCAACAGGCGTGAG
GCGCTCCAGAGCGTGCCTGTGTCGATAGGCGGCCTCACCGGCCTTACAAG
CCTTGGTTTCCGTAAGTGTGAGGCGCTCCAGAGCGTGCCTGAGTCCATAG
GCGGCCTCACCGGCCTCACAAGCCTTGATTTCTGTGAGTGTGAGGCGCTC
CAGAGCGTGCCTGAGTCGATTGGCGGCCTCACTGGCCTCACAAGCCTTGA
TTTCTGTGAGTGTGAGGCGCTCCAGAGCGTGCCTGAGTCCATATGCAACC
TCACCGGCCTCACAAGCCTTGACCTGATCAAATGC
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