Trimin1|153939|gw1.6.324.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|153939
Unique NameTrimin1|153939|gw1.6.324.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length87
Homology
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A835YNS0_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS0_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.570e-63
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 87
            FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP
Sbjct:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 87          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0L8S9_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0L8S9_SPHPU)

HSP 1 Score: 62.8 bits (151), Expect = 6.830e-10
Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 0
Query:    3 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
             ELKCPVCL YFNNP  L C H  C+ C  +       N  CP CRQ F K+    N  + NV+ A Q
Sbjct:   55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A0N8JVG6_SCLFO (Uncharacterized protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JVG6_SCLFO)

HSP 1 Score: 61.2 bits (147), Expect = 8.810e-10
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 0
Query:    3 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 73
            +EL+CP+CL +FNNPT LPC H  C  C    L      C P CR  F + QL  N  ++N++      +G
Sbjct:    8 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 77          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0H857_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0H857_SPHPU)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 0
Query:    3 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
             ELKCPVCL YFNNP  L C H  C+ C  +       N  CP CRQ F K+    N  + NV+ A Q
Sbjct:   55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A672KTT9_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KTT9_SINGR)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-9
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 0
Query:    5 LKCPVCLSYFNNPTNLPCNHPLCEQCALQILA--NTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
            L CPVCLS FN+P +LPC H  C QC    L      H C P CRQ F ++ L  N  ++NV+   Q
Sbjct:    9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLELHEGAHKC-PECRQNFTRQDLKGNRVLRNVVDILQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A3N0YPT1_ANAGA (Zinc-binding protein A33 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YPT1_ANAGA)

HSP 1 Score: 62.4 bits (150), Expect = 2.050e-9
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0
Query:    4 ELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANT--THNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
             L CPVCLS FN+P +LPC H  C+QC    L +    H C P CRQ F ++ +  N  ++NV+ A Q
Sbjct:    8 HLMCPVCLSDFNDPVSLPCQHVFCKQCITSYLESIEGAHKC-PECRQNFTRQDVKGNRVLRNVVDAVQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: D8LC67_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC67_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.410e-9
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0
Query:    2 GEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
              EL CP+CL  F +  +LPC+H  C +C L    ++    CP C+    KR L R+V IQN++ A++
Sbjct:   68 AAELTCPICLCVFEDAHSLPCSHRFCLECILGCFKSSKRQECPLCKIPAWKRDLTRDVSIQNIIAAYR 135          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C1IBI6_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IBI6_CYPCA)

HSP 1 Score: 61.6 bits (148), Expect = 3.800e-9
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0
Query:    5 LKCPVCLSYFNNPTNLPCNHPLCEQCALQIL-ANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 69
            L CPVCLS FN+P +LPC H  C QC    L ++   + CP CRQ F ++ L  N  ++NV+   Q
Sbjct:    9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLESHEGAHKCPECRQNFTRQDLKGNRVLKNVVDVLQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: UPI001403F5F6 (E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 n=3 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403F5F6)

HSP 1 Score: 61.2 bits (147), Expect = 5.110e-9
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 0
Query:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC---CPTCRQEFNKR-QLGRNVWIQNVMTAFQAC 71
            F EEL C VCLS + +P  LPC H  C +C      ++   C   CP CR+ FN R  L +N  +QN++  +  C
Sbjct:    6 FTEELTCAVCLSLYQDPVALPCQHSFCAKCISDAWDHSESMCGVNCPQCRRNFNPRPSLVKNHTLQNIVEMYSQC 80          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C9RQ76_SCLFO (Nuclear factor 7, brain-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RQ76_SCLFO)

HSP 1 Score: 61.2 bits (147), Expect = 5.240e-9
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 0
Query:    3 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 73
            +EL+CP+CL +FNNPT LPC H  C  C    L      C P CR  F + QL  N  ++N++      +G
Sbjct:   30 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 99          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNS0_9STRA3.570e-63100.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A8D0L8S9_SPHPU6.830e-1045.59Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
A0A0N8JVG6_SCLFO8.810e-1039.44Uncharacterized protein n=1 Tax=Scleropages formos... [more]
A0A8D0H857_SPHPU1.190e-945.59Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
A0A672KTT9_SINGR1.500e-944.78Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A3N0YPT1_ANAGA2.050e-944.12Zinc-binding protein A33 n=2 Tax=Xenocypridinae Ta... [more]
D8LC67_ECTSI2.410e-938.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8C1IBI6_CYPCA3.800e-943.94Uncharacterized protein n=1 Tax=Cyprinus carpio Ta... [more]
UPI001403F5F65.110e-938.67E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 n... [more]
A0A8C9RQ76_SCLFO5.240e-939.44Nuclear factor 7, brain-like n=2 Tax=Scleropages f... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 7..46
e-value: 1.6E-4
score: 31.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 7..47
score: 12.002429
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 4..51
e-value: 3.6E-9
score: 36.3
NoneNo IPR availablePANTHERPTHR24103E3 UBIQUITIN-PROTEIN LIGASE TRIMcoord: 3..69
NoneNo IPR availablePANTHERPTHR24103:SF633TRIPARTITE MOTIF-CONTAINING 108-RELATEDcoord: 3..69
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..71
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..81
e-value: 3.0E-17
score: 64.2
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 22..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:23556..23816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153939mRNA_2034Tribonema minus UTEX_B_3156 mRNAContig_6 23556..23816 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|153939|gw1.6.324.1 ID=Trimin1|153939|gw1.6.324.1|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEF
NKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS