mRNA_2034 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A835YNS0_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS0_9STRA) HSP 1 Score: 194 bits (493), Expect = 3.570e-63 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query: 1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 261
FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP
Sbjct: 1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 87
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0L8S9_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0L8S9_SPHPU) HSP 1 Score: 62.8 bits (151), Expect = 6.830e-10 Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 1
Query: 7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
ELKCPVCL YFNNP L C H C+ C + N CP CRQ F K+ N + NV+ A Q
Sbjct: 55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A0N8JVG6_SCLFO (Uncharacterized protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JVG6_SCLFO) HSP 1 Score: 61.2 bits (147), Expect = 8.810e-10 Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query: 7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 219
+EL+CP+CL +FNNPT LPC H C C L C P CR F + QL N ++N++ +G
Sbjct: 8 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 77
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0H857_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0H857_SPHPU) HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9 Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 1
Query: 7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
ELKCPVCL YFNNP L C H C+ C + N CP CRQ F K+ N + NV+ A Q
Sbjct: 55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A672KTT9_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KTT9_SINGR) HSP 1 Score: 60.5 bits (145), Expect = 1.500e-9 Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 13 LKCPVCLSYFNNPTNLPCNHPLCEQCALQILA--NTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
L CPVCLS FN+P +LPC H C QC L H C P CRQ F ++ L N ++NV+ Q
Sbjct: 9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLELHEGAHKC-PECRQNFTRQDLKGNRVLRNVVDILQ 74
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A3N0YPT1_ANAGA (Zinc-binding protein A33 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YPT1_ANAGA) HSP 1 Score: 62.4 bits (150), Expect = 2.050e-9 Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1
Query: 10 ELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANT--THNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
L CPVCLS FN+P +LPC H C+QC L + H C P CRQ F ++ + N ++NV+ A Q
Sbjct: 8 HLMCPVCLSDFNDPVSLPCQHVFCKQCITSYLESIEGAHKC-PECRQNFTRQDVKGNRVLRNVVDAVQ 74
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: D8LC67_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC67_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.410e-9 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query: 4 GEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
EL CP+CL F + +LPC+H C +C L ++ CP C+ KR L R+V IQN++ A++
Sbjct: 68 AAELTCPICLCVFEDAHSLPCSHRFCLECILGCFKSSKRQECPLCKIPAWKRDLTRDVSIQNIIAAYR 135
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C1IBI6_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IBI6_CYPCA) HSP 1 Score: 61.6 bits (148), Expect = 3.800e-9 Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 13 LKCPVCLSYFNNPTNLPCNHPLCEQCALQIL-ANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
L CPVCLS FN+P +LPC H C QC L ++ + CP CRQ F ++ L N ++NV+ Q
Sbjct: 9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLESHEGAHKCPECRQNFTRQDLKGNRVLKNVVDVLQ 74
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: UPI001403F5F6 (E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 n=3 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403F5F6) HSP 1 Score: 61.2 bits (147), Expect = 5.110e-9 Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 1
Query: 1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC---CPTCRQEFNKR-QLGRNVWIQNVMTAFQAC 213
F EEL C VCLS + +P LPC H C +C ++ C CP CR+ FN R L +N +QN++ + C
Sbjct: 6 FTEELTCAVCLSLYQDPVALPCQHSFCAKCISDAWDHSESMCGVNCPQCRRNFNPRPSLVKNHTLQNIVEMYSQC 80
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C9RQ76_SCLFO (Nuclear factor 7, brain-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RQ76_SCLFO) HSP 1 Score: 61.2 bits (147), Expect = 5.240e-9 Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query: 7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 219
+EL+CP+CL +FNNPT LPC H C C L C P CR F + QL N ++N++ +G
Sbjct: 30 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 99 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTTGGCGAGGAACTCAAGTGCCCTGTCTGCCTCAGCTACTTCAACAACCCback to top protein sequence of jgi.p|Trimin1|153939 >Trimin1|153939|gw1.6.324.1 ID=Trimin1|153939|gw1.6.324.1|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFback to top mRNA from alignment at Contig_6:23556..23816+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_6:23556..23816+ >mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )back to top |