mRNA_2034 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153939
Unique NamemRNA_2034
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A835YNS0_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS0_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.570e-63
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 261
            FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP
Sbjct:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP 87          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0L8S9_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0L8S9_SPHPU)

HSP 1 Score: 62.8 bits (151), Expect = 6.830e-10
Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
             ELKCPVCL YFNNP  L C H  C+ C  +       N  CP CRQ F K+    N  + NV+ A Q
Sbjct:   55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A0N8JVG6_SCLFO (Uncharacterized protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JVG6_SCLFO)

HSP 1 Score: 61.2 bits (147), Expect = 8.810e-10
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query:    7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 219
            +EL+CP+CL +FNNPT LPC H  C  C    L      C P CR  F + QL  N  ++N++      +G
Sbjct:    8 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 77          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8D0H857_SPHPU (Uncharacterized protein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0H857_SPHPU)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 31/68 (45.59%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC-CPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
             ELKCPVCL YFNNP  L C H  C+ C  +       N  CP CRQ F K+    N  + NV+ A Q
Sbjct:   55 SELKCPVCLDYFNNPVTLDCGHNFCQVCITRSWEEWNGNVSCPECRQVFPKKSFKLNRKLGNVVEANQ 122          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A672KTT9_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KTT9_SINGR)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-9
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   13 LKCPVCLSYFNNPTNLPCNHPLCEQCALQILA--NTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
            L CPVCLS FN+P +LPC H  C QC    L      H C P CRQ F ++ L  N  ++NV+   Q
Sbjct:    9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLELHEGAHKC-PECRQNFTRQDLKGNRVLRNVVDILQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A3N0YPT1_ANAGA (Zinc-binding protein A33 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YPT1_ANAGA)

HSP 1 Score: 62.4 bits (150), Expect = 2.050e-9
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   10 ELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANT--THNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
             L CPVCLS FN+P +LPC H  C+QC    L +    H C P CRQ F ++ +  N  ++NV+ A Q
Sbjct:    8 HLMCPVCLSDFNDPVSLPCQHVFCKQCITSYLESIEGAHKC-PECRQNFTRQDVKGNRVLRNVVDAVQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: D8LC67_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC67_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.410e-9
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    4 GEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
              EL CP+CL  F +  +LPC+H  C +C L    ++    CP C+    KR L R+V IQN++ A++
Sbjct:   68 AAELTCPICLCVFEDAHSLPCSHRFCLECILGCFKSSKRQECPLCKIPAWKRDLTRDVSIQNIIAAYR 135          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C1IBI6_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IBI6_CYPCA)

HSP 1 Score: 61.6 bits (148), Expect = 3.800e-9
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   13 LKCPVCLSYFNNPTNLPCNHPLCEQCALQIL-ANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQ 207
            L CPVCLS FN+P +LPC H  C QC    L ++   + CP CRQ F ++ L  N  ++NV+   Q
Sbjct:    9 LMCPVCLSDFNDPVSLPCEHVFCRQCITSYLESHEGAHKCPECRQNFTRQDLKGNRVLKNVVDVLQ 74          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: UPI001403F5F6 (E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 n=3 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001403F5F6)

HSP 1 Score: 61.2 bits (147), Expect = 5.110e-9
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 1
Query:    1 FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNC---CPTCRQEFNKR-QLGRNVWIQNVMTAFQAC 213
            F EEL C VCLS + +P  LPC H  C +C      ++   C   CP CR+ FN R  L +N  +QN++  +  C
Sbjct:    6 FTEELTCAVCLSLYQDPVALPCQHSFCAKCISDAWDHSESMCGVNCPQCRRNFNPRPSLVKNHTLQNIVEMYSQC 80          
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Match: A0A8C9RQ76_SCLFO (Nuclear factor 7, brain-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RQ76_SCLFO)

HSP 1 Score: 61.2 bits (147), Expect = 5.240e-9
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query:    7 EELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEFNKRQLGRNVWIQNVMTAFQACMG 219
            +EL+CP+CL +FNNPT LPC H  C  C    L      C P CR  F + QL  N  ++N++      +G
Sbjct:   30 QELRCPICLEFFNNPTTLPCEHTFCHSCIQGTLVAQGPRC-PECRATFLQDQLRPNRILRNMVDRVHTELG 99          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153939 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNS0_9STRA3.570e-63100.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A8D0L8S9_SPHPU6.830e-1045.59Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
A0A0N8JVG6_SCLFO8.810e-1039.44Uncharacterized protein n=1 Tax=Scleropages formos... [more]
A0A8D0H857_SPHPU1.190e-945.59Uncharacterized protein n=1 Tax=Sphenodon punctatu... [more]
A0A672KTT9_SINGR1.500e-944.78Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A3N0YPT1_ANAGA2.050e-944.12Zinc-binding protein A33 n=2 Tax=Xenocypridinae Ta... [more]
D8LC67_ECTSI2.410e-938.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8C1IBI6_CYPCA3.800e-943.94Uncharacterized protein n=1 Tax=Cyprinus carpio Ta... [more]
UPI001403F5F65.110e-938.67E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 n... [more]
A0A8C9RQ76_SCLFO5.240e-939.44Nuclear factor 7, brain-like n=2 Tax=Scleropages f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:23556..23816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153939|gw1.6.324.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04064,ko04120,ko04622,ko05164,map04064,map04120,map04622,map05164
KEGG koko:K08285,ko:K10652
EC2.3.2.27
DescriptionE3 ubiquitin ISG15 ligase TRIM25-like
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsKOG2177@1|root,KOG2177@2759|Eukaryota,39W5T@33154|Opisthokonta,3BGTV@33208|Metazoa,3D4DQ@33213|Bilateria,48BCP@7711|Chordata,498G4@7742|Vertebrata,49VAT@7898|Actinopterygii
Evalue5.22e-11
Seed ortholog7918.ENSLOCP00000022041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_004780.1
TranscriptId154261
TrackFilteredModels1
ProteinId153939
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153939gene_2034Tribonema minus UTEX_B_3156 geneContig_6 23556..23816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2034_1exon_2034_1Tribonema minus UTEX_B_3156 exonContig_6 23556..23816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2034CDS_2034Tribonema minus UTEX_B_3156 CDSContig_6 23556..23816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153939Trimin1|153939|gw1.6.324.1Tribonema minus UTEX_B_3156 polypeptideContig_6 23556..23816 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTTGGCGAGGAACTCAAGTGCCCTGTCTGCCTCAGCTACTTCAACAACCC
CACAAACCTGCCCTGCAACCACCCCTTATGCGAGCAGTGCGCGCTCCAGA
TACTAGCAAATACGACCCACAATTGCTGTCCCACGTGCCGCCAGGAGTTC
AACAAGCGGCAGCTCGGCCGCAATGTCTGGATACAGAATGTGATGACTGC
ATTTCAGGCATGCATGGGCGAATTCGGCTTGGCTCTTACGCAGAGCGAGT
CTCCTCCTCCC
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protein sequence of jgi.p|Trimin1|153939

>Trimin1|153939|gw1.6.324.1 ID=Trimin1|153939|gw1.6.324.1|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
FGEELKCPVCLSYFNNPTNLPCNHPLCEQCALQILANTTHNCCPTCRQEF
NKRQLGRNVWIQNVMTAFQACMGEFGLALTQSESPPP
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mRNA from alignment at Contig_6:23556..23816+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )
TTTGGCGAGGAACTCAAGTGCCCTGTCTGCCTCAGCTACTTCAACAACCC CACAAACCTGCCCTGCAACCACCCCTTATGCGAGCAGTGCGCGCTCCAGA TACTAGCAAATACGACCCACAATTGCTGTCCCACGTGCCGCCAGGAGTTC AACAAGCGGCAGCTCGGCCGCAATGTCTGGATACAGAATGTGATGACTGC ATTTCAGGCATGCATGGGCGAATTCGGCTTGGCTCTTACGCAGAGCGAGT CTCCTCCTCCC
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Coding sequence (CDS) from alignment at Contig_6:23556..23816+

>mRNA_2034 ID=mRNA_2034|Name=jgi.p|Trimin1|153939|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_6:23556..23816+ (Tribonema minus UTEX_B_3156 )
TTTGGCGAGGAACTCAAGTGCCCTGTCTGCCTCAGCTACTTCAACAACCC
CACAAACCTGCCCTGCAACCACCCCTTATGCGAGCAGTGCGCGCTCCAGA
TACTAGCAAATACGACCCACAATTGCTGTCCCACGTGCCGCCAGGAGTTC
AACAAGCGGCAGCTCGGCCGCAATGTCTGGATACAGAATGTGATGACTGC
ATTTCAGGCATGCATGGGCGAATTCGGCTTGGCTCTTACGCAGAGCGAGT
CTCCTCCTCCC
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