Trimin1|1517|CE1516_189 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|1517
Unique NameTrimin1|1517|CE1516_189
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length141
Homology
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.520e-87
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:    1 MGGKGKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAAEASTASASQEY 140
            MGGKGKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAAEASTASASQEY
Sbjct:    1 MGGKGKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAAEASTASASQEY 140          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC)

HSP 1 Score: 204 bits (519), Expect = 1.220e-65
Identity = 101/122 (82.79%), Postives = 116/122 (95.08%), Query Frame = 0
Query:    1 MGGKGKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKT 122
            M GKGKGKGGRGDKK+ + SAKAGLQFPVGR+GR+L+QG+YA R+GAGAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIAAGGVLPNIHA+LLPKK+
Sbjct:    1 MSGKGKGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKKS 122          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.100e-64
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 0
Query:    5 GKGKGGRGD--KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKA 128
            GKGKGGRG   KK+ SKS+KAGLQFPV R+GRFLK GRYA+RVGAGAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRHIQLAVRNDEELNKLLG VTIA+GGVLPNIHAVLLPKKT S +KA
Sbjct:    3 GKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASAAKA 128          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC)

HSP 1 Score: 202 bits (513), Expect = 1.480e-64
Identity = 102/122 (83.61%), Postives = 115/122 (94.26%), Query Frame = 0
Query:    2 GGKGKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKT 122
            GGKGKGKGGRGDKK   S S+KAGLQFPVGR+GR+L+QG+YA R+GAGAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIAAGGVLPNIHA+LLPKKT
Sbjct:    7 GGKGKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKT 128          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.980e-64
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 0
Query:    5 GKGKGGRG--DKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKA 128
            GKGKGGRG   KK  S+SAKAGLQFPV R+GR+LKQGRYA RVGAGAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRHIQLAVRNDEELN+LLG VTIA+GGVLPNIHAVLLPKKT +K+ A
Sbjct:    3 GKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAKAAA 128          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A448YXB3_9STRA (Histone H2A n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YXB3_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.950e-63
Identity = 102/127 (80.31%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    5 GKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAAE 130
            GKGKGGRG KK +VS S KAGLQFPVGR+GR+L+QG+YA R+GAGAPVY+A+V+EYLCAE+LEL+GNAARDNKKSRIIPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHAVLLPKKT+  SKA++
Sbjct:    3 GKGKGGRGAKKGSVSSSQKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLASVLEYLCAEILELAGNAARDNKKSRIIPRHITLAVKNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTKMNSKASQ 129          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A6G0X3A7_9STRA (Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 RepID=A0A6G0X3A7_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.030e-63
Identity = 110/143 (76.92%), Postives = 122/143 (85.31%), Query Frame = 0
Query:    1 MGGKGKGKGGRGDK-KAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK--SKAAEASTASASQEY 140
            M GKGK  GGRG K K  S+SAKAGLQFPVGRV RFLK+GRYA+R+G GAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRIIPRHIQLAVRNDEELNKLLG VTIA+GGVLPNIH VLLPKK+ S   SK  +    SASQ+Y
Sbjct:    1 MSGKGKATGGRGKKGKTSSRSAKAGLQFPVGRVARFLKKGRYAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHNVLLPKKSSSATTSKEGKKGKESASQDY 143          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 2.940e-63
Identity = 104/121 (85.95%), Postives = 115/121 (95.04%), Query Frame = 0
Query:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
            GKGKGGRG KK+ ++SAKAGLQFPVGRVGRFLK+G+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKKT  K
Sbjct:    3 GKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 4.470e-63
Identity = 108/136 (79.41%), Postives = 124/136 (91.18%), Query Frame = 0
Query:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKSKAAEASTASASQEY 140
            GKGKGGRG KK+ SKS+KAGLQFPV R+GR+LK+G+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK+    KA   ++ASASQ+Y
Sbjct:    3 GKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSSVGGKAK--ASASASQDY 135          
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.410e-63
Identity = 96/118 (81.36%), Postives = 113/118 (95.76%), Query Frame = 0
Query:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKT 122
            GKGKGGRG+KK+ + SAKAGLQFPVGR+GR+L+QG+YA R+GAGAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK+
Sbjct:    3 GKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKS 120          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|1517 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZLE9_9STRA1.520e-87100.00Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWQ2_PHATC1.220e-6582.79Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A836CG77_9STRA1.100e-6484.13Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
B7FZS7_PHATC1.480e-6483.61Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=... [more]
A0A835ZBB6_9STRA9.980e-6482.54Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A448YXB3_9STRA1.950e-6380.31Histone H2A n=5 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A6G0X3A7_9STRA2.030e-6376.92Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 Re... [more]
D7FWI9_ECTSI2.940e-6385.95Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6H5KG79_9PHAE4.470e-6379.41Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A448ZH28_9STRA8.410e-6381.36Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 73..87
score: 78.35
coord: 15..37
score: 68.82
coord: 59..72
score: 80.34
coord: 101..119
score: 76.14
coord: 44..59
score: 81.73
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
e-value: 2.5E-79
score: 279.5
IPR002119Histone H2APANTHERPTHR23430HISTONE H2Acoord: 6..129
IPR002119Histone H2ACDDcd00074H2Acoord: 16..121
e-value: 1.44676E-67
score: 197.943
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 10..90
e-value: 1.0E-14
score: 55.0
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..132
e-value: 9.7E-65
score: 218.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 6..124
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 93..127
e-value: 1.7E-19
score: 69.3
NoneNo IPR availablePIRSRPIRSR037942-1PIRSR037942-1coord: 8..134
e-value: 6.2E-54
score: 181.4
NoneNo IPR availablePANTHERPTHR23430:SF238HISTONE H2Acoord: 6..129
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 23..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1901258..1902757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|1517mRNA_1172Tribonema minus UTEX_B_3156 mRNAContig_1 1899473..1902787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|1517|CE1516_189 ID=Trimin1|1517|CE1516_189|Name=jgi.p|Trimin1|1517|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MGGKGKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAP
VYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLG
KVTIAAGGVLPNIHAVLLPKKTRSKSKAAEASTASASQEY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032454Histone_H2A_C
IPR032458Histone_H2A_CS