Trimin1|148461|gw1.167.88.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|148461
Unique NameTrimin1|148461|gw1.167.88.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length111
Homology
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CLV4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.000e-32
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA 111
            LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA
Sbjct:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA 111          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-15
Identity = 50/111 (45.05%), Postives = 57/111 (51.35%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            L PDV +YTS IN YAT K+P KAEA  AEMC++A VKPN                                           +AAD AGD+KRADQLY DALLSGA+KPY
Sbjct:  578 LEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGDLKRADQLYEDALLSGAIKPY 688          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835YRT0_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.980e-10
Identity = 42/97 (43.30%), Postives = 49/97 (50.52%), Query Frame = 0
Query:   15 YATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            YATA +P KAEA LAE+C+SA V+PN                                           +AADAAGDVKRAD+LYSDALLSG +KPY
Sbjct:  326 YATAMEPEKAEAVLAEICQSATVRPNVFTFNSIVKAYNEVQRLDDAEQVISRMRAAGVQPGLQTWNGIIHAADAAGDVKRADRLYSDALLSGTIKPY 422          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.010e-10
Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            L P+  +Y + INCYATAK P KAE  L EM +SA +KP+XXXXXXXXXXXXXXXXXXXXX                      +AAD  GD+KRADQL SDALL+  +KPY
Sbjct:  176 LEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPDXXXXXXXXXXXXXXXXXXXXXHVISRMRAAGVQPIIGTWKSIIHAADTLGDIKRADQLCSDALLTDGIKPY 286          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.550e-10
Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            L+P+V +Y +LINCYATAK+PG+AE  LAEM +SA V   XXXXXXXXXXXXXXX   XX                       +AA+A GD+K+AD LY+DAL SG + PY
Sbjct:  279 LVPNVRSYNTLINCYATAKNPGEAEEVLAEMIQSAAVTXXXXXXXXXXXXXXXXXRLDXXELIIDRMRAAGVQPMLSTWAAIIHAAEAHGDLKKADDLYADALSSGTINPY 389          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.930e-9
Identity = 44/124 (35.48%), Postives = 53/124 (42.74%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNA-------------ADAAGDVKRADQLYSDALLSGAVKPY 110
            L PDV AY +LI CYATA+ P KAE  +AEMC+SA VKP+                                            A             ADA GD+K+ D+LY DALLS A+ PY
Sbjct:  299 LAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGDIKKVDRLYRDALLSKAINPY 422          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CIT2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.660e-9
Identity = 40/98 (40.82%), Postives = 47/98 (47.96%), Query Frame = 0
Query:   14 CYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            CYA AKDPGKAE  LA+M +SA V+PN                                           +AA A GD+KRAD+LY+DALLSGAV PY
Sbjct:  204 CYAMAKDPGKAEKVLADMIKSAAVEPNAITFNSVMKAYIEVQRLDDAEDVISRMRATGVQPDLEIWTSIIHAAGALGDIKRADRLYNDALLSGAVNPY 301          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.820e-9
Identity = 40/111 (36.04%), Postives = 52/111 (46.85%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAV-KPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 110
            L PD  +Y + INCYA A +P KAE+ LAEM +S++ KPN                                           +AADA GDV+RAD+LY+ AL S A+ PY
Sbjct:  414 LTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKAYYQKGRLDEAVLIIDRMVVEGVQPNLDTWRSIIHAADALGDVRRADELYAGALSSQAINPY 524          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 40/108 (37.04%), Postives = 50/108 (46.30%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAV 107
            L+PDV +Y + INCYAT KDPGKAE  LAEM +SA +  +                                           +AADA  DVK+ADQLY+DAL  G +
Sbjct:  116 LVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDDVKKADQLYADALSLGTI 223          
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPN 39
            L+P+V +Y +LINCYA AKDPGKAE  LAEM +SA VKPN
Sbjct:   41 LVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPN 80          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A836CLV4_9STRA3.000e-32100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CK07_9STRA1.680e-1545.05PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YRT0_9STRA2.980e-1043.30PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YW77_9STRA7.010e-1055.86PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA7.550e-1052.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA1.930e-935.48PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CIT2_9STRA4.660e-940.82PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA6.820e-936.04PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA1.090e-837.04PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJV6_9STRA1.410e-770.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..108
e-value: 2.7E-24
score: 88.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 42..74
e-value: 1.9E-5
score: 22.5
coord: 7..40
e-value: 1.5E-6
score: 26.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 10.205028
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 10.325603
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..109
score: 8.61564
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 7..93
e-value: 1.2E-9
score: 37.8
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 3..99
NoneNo IPR availablePANTHERPTHR47932:SF44ATPASE EXPRESSION PROTEIN 3coord: 3..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:160250..162366 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148461mRNA_16947Tribonema minus UTEX_B_3156 mRNAContig_167 160250..162366 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|148461|gw1.167.88.1 ID=Trimin1|148461|gw1.167.88.1|Name=jgi.p|Trimin1|148461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNTIAFSSVMKAY
IEMQRLDEAEHVISRMRAAEVQPDLQTWNSIMNAADAAGDVKRADQLYSD
ALLSGAVKPYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long