mRNA_16947 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148461
Unique NamemRNA_16947
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CLV4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.000e-32
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA 333
            LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA
Sbjct:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPYA 111
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-15
Identity = 50/111 (45.05%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            L PDV +YTS IN YAT K+P KAEA  AEMC++A VKPN                                           +AAD AGD+KRADQLY DALLSGA+KPY
Sbjct:  578 LEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGDLKRADQLYEDALLSGAIKPY 688
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835YRT0_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.980e-10
Identity = 42/97 (43.30%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:   43 YATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            YATA +P KAEA LAE+C+SA V+PN                                           +AADAAGDVKRAD+LYSDALLSG +KPY
Sbjct:  326 YATAMEPEKAEAVLAEICQSATVRPNVFTFNSIVKAYNEVQRLDDAEQVISRMRAAGVQPGLQTWNGIIHAADAAGDVKRADRLYSDALLSGTIKPY 422
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.010e-10
Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            L P+  +Y + INCYATAK P KAE  L EM +SA +KP+XXXXXXXXXXXXXXXXXXXXX                      +AAD  GD+KRADQL SDALL+  +KPY
Sbjct:  176 LEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPDXXXXXXXXXXXXXXXXXXXXXHVISRMRAAGVQPIIGTWKSIIHAADTLGDIKRADQLCSDALLTDGIKPY 286
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.550e-10
Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            L+P+V +Y +LINCYATAK+PG+AE  LAEM +SA V   XXXXXXXXXXXXXXX   XX                       +AA+A GD+K+AD LY+DAL SG + PY
Sbjct:  279 LVPNVRSYNTLINCYATAKNPGEAEEVLAEMIQSAAVTXXXXXXXXXXXXXXXXXRLDXXELIIDRMRAAGVQPMLSTWAAIIHAAEAHGDLKKADDLYADALSSGTINPY 389
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.930e-9
Identity = 44/124 (35.48%), Postives = 53/124 (42.74%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNA-------------ADAAGDVKRADQLYSDALLSGAVKPY 330
            L PDV AY +LI CYATA+ P KAE  +AEMC+SA VKP+                                            A             ADA GD+K+ D+LY DALLS A+ PY
Sbjct:  299 LAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGDIKKVDRLYRDALLSKAINPY 422
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CIT2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.660e-9
Identity = 40/98 (40.82%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:   40 CYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            CYA AKDPGKAE  LA+M +SA V+PN                                           +AA A GD+KRAD+LY+DALLSGAV PY
Sbjct:  204 CYAMAKDPGKAEKVLADMIKSAAVEPNAITFNSVMKAYIEVQRLDDAEDVISRMRATGVQPDLEIWTSIIHAAGALGDIKRADRLYNDALLSGAVNPY 301
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BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.820e-9
Identity = 40/111 (36.04%), Postives = 52/111 (46.85%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAV-KPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAVKPY 330
            L PD  +Y + INCYA A +P KAE+ LAEM +S++ KPN                                           +AADA GDV+RAD+LY+ AL S A+ PY
Sbjct:  414 LTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKAYYQKGRLDEAVLIIDRMVVEGVQPNLDTWRSIIHAADALGDVRRADELYAGALSSQAINPY 524
[Close]
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 40/108 (37.04%), Postives = 50/108 (46.30%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAADAAGDVKRADQLYSDALLSGAV 321
            L+PDV +Y + INCYAT KDPGKAE  LAEM +SA +  +                                           +AADA  DVK+ADQLY+DAL  G +
Sbjct:  116 LVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDDVKKADQLYADALSLGTI 223
[Close]
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-7
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSA-VKPN 117
            L+P+V +Y +LINCYA AKDPGKAE  LAEM +SA VKPN
Sbjct:   41 LVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPN 80
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148461 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A836CLV4_9STRA3.000e-32100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CK07_9STRA1.680e-1545.05PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YRT0_9STRA2.980e-1043.30PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YW77_9STRA7.010e-1055.86PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA7.550e-1052.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA1.930e-935.48PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CIT2_9STRA4.660e-940.82PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA6.820e-936.04PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA1.090e-837.04PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJV6_9STRA1.410e-770.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:160250..162366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148461|gw1.167.88.1
Hectar predicted targeting categoryother localisation
TranscriptId148783
TrackFilteredModels1
ProteinId148461
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148461gene_16947Tribonema minus UTEX_B_3156 geneContig_167 160250..162366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148461Trimin1|148461|gw1.167.88.1Tribonema minus UTEX_B_3156 polypeptideContig_167 160250..162366 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16947_2exon_16947_2Tribonema minus UTEX_B_3156 exonContig_167 160250..160448 -
exon_16947_1exon_16947_1Tribonema minus UTEX_B_3156 exonContig_167 162233..162366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16947CDS_16947Tribonema minus UTEX_B_3156 CDSContig_167 162233..162366 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16947 ID=mRNA_16947|Name=jgi.p|Trimin1|148461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_167:160250..162366- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGTTGCCTGACGTCATGGCCTACACTTCTCTGATCAACTGCTATGCAAC
AGCAAAAGACCCTGGAAAGGCGGAGGCAGCTCTTGCGGAGATGTGCCGGT
CTGCCGTCAAACCAAATACCATCGCTTTCAGCAGCGTCATGAAAGCATAC
ATTGAGATGCAGCGCCTGGACGAAGCAGAGCATGTCATCAGCAGGATGCG
AGCTGCAGAGGTACAGCCAGACCTGCAAACATGGAATAGCATCATGAATG
CTGCAGATGCAGCAGGTGATGTCAAGAGGGCAGACCAGCTGTACAGCGAT
GCTCTGTTGTCGGGTGCTGTCAAGCCATACGCG
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protein sequence of jgi.p|Trimin1|148461

>Trimin1|148461|gw1.167.88.1 ID=Trimin1|148461|gw1.167.88.1|Name=jgi.p|Trimin1|148461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
LLPDVMAYTSLINCYATAKDPGKAEAALAEMCRSAVKPNTIAFSSVMKAY
IEMQRLDEAEHVISRMRAAEVQPDLQTWNSIMNAADAAGDVKRADQLYSD
ALLSGAVKPYA
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mRNA from alignment at Contig_167:160250..162366-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16947 ID=mRNA_16947|Name=jgi.p|Trimin1|148461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2117bp|location=Sequence derived from alignment at Contig_167:160250..162366- (Tribonema minus UTEX_B_3156 )
CTGTTGCCTGACGTCATGGCCTACACTTCTCTGATCAACTGCTATGCAAC
AGCAAAAGACCCTGGAAAGGCGGAGGCAGCTCTTGCGGAGATGTGCCGGT
CTGCCGTCAAACCAAATACCATCGCTTTCAGCAGGTGAGTGCATTGCGCG
TCCGTGCATTGCGCGTTGCAATGTATACTGCCAGCCTATGCACCGCAGAA
AATGGATTGCGACTCAACAGACCCTGGGGGCCCTTGTGTTGCAAAGTATG
CATTACGACTCAGGCTGTCGGAATTTGGACGGGGCCCCCCGCCCCGGGGG
TAGTATCATATGATTGGAAGCCCCTTTCATGCAATTTGAGAGTGCTTGTT
GTTTTCGCATTCTGGCACCGCTCACACATCAGTCAGCCCCACTCACTGCC
TTGTGCTGGCAGCCACTACAAGTCTGAGGGTGCCAATGCTTCTGGCTTCA
CTAGTTGATATTCAGGCACCAAGCTAGGCTAAGCCACATGATCTATGCAG
CAATCAGAATGCGTACACGCTTTTGACCTTTGAATAGCTCAGGGTGTTGG
CTCAGAATTCTCACGTCTTCGAGTTTTTGTGTTCGCATCTGACAAACTGC
GACAGTCACTGTTGCTTTCATTCCTAGCATTCCAGTGCTTGTGCTCCAAT
GTAAGTGGTCGGCACCCAAATACGGCAAAATGAGATGCCACAGTGTTGAC
TATACGACACACGATGGTCTAGCTCTCACACAAGGGAAGCAATGTCATCC
AGTTACCAGCTTGTATATTGCACTTACTGTATGGCGACTGATCGTCTTGA
AGCACAGCCAGCTGCTGGCATGCTCTTGTCGAGGATGTGACGTGACTGAG
GATTTGACAACTGTTACAGACTCAGTCTCACAGGAAGAAAGCTGCCGGAG
GTCACTGCATGTGTGCCACACAGGCTAGTAGCTGCAGACTTGTCGACACT
TGACACGGGCAACTGTTACAGACAACACGCAAACCTCATGGTCACTTGTA
GCATCAATGCAACATTTAATGCACAAACTTTGAATATACCGCACAGTGAC
TCTTAAGCGGTACTTAACGTTTGCATGTCAACTGCAAAACCAAGCCTTTT
GTGATATTCGAGTGGGACCACGCACAGTGGAATTTTGCTTTTCTTTTCCG
CCTGCCCTCATCGACTCGCGCTTAACTTCATCAGGTTAGGCTGTGCTCGA
TCATCATGCCAGTGGACCATTGCGTTGATTGCATTGCATGACATCACAGT
GTTTTGCTACCTGGCTTCTGGTCAAACTTAAGGTGTTGCTGAATAGCCCA
GCTGAGTATGCAGGCTGGCTTCTGGTCAAACTTAAGGTGTTGCTGAATAG
CCCAGCTGAGTATGCAGTGCATGAGACACGCAAGAGTTGAGGTTGACGCT
GGCTGCAGCACCAGCATGAGTCATGTTCAAGTTGTCCAGCAGTACAGGTG
TGCATTCTGTTGTTAACCTGCATGTGTGCAAACCTGCTAATTGAAAAGTG
GCGTTGTAGTTGAGGCGAGCGCAAAAACGCTGTCGATTCGCAACTTCAAG
TTGTCGCTTACAGAATTCAATGACTCACTGACAGACCCAATGGCATGTGT
TGCCCTGCCATTGCACGCACAACCGCCATGAGTCATGTTCTGTTCAATGT
GTGCAATAATGGCCATTACGGAACGTAAGTGCACCTCAAGGATCATAATG
CACATGTACACTTCTGCCATCTGCAGATGTCCCACTTGGTGCCAACTTGT
CATGATGTAGGCCATGCACCACGGGTGCATGCGGGCAGCTTGTTGTCATT
GTTGCAGTTGGGCATAACATACAATCTGCTTTACTGGCACCAAGGTGCTC
ATGAATCATTGACAAAACGTCATAATATGCTGATCACAATGCCTACTCCC
TTGCTTGTGCCTGGTCAGCGTCATGAAAGCATACATTGAGATGCAGCGCC
TGGACGAAGCAGAGCATGTCATCAGCAGGATGCGAGCTGCAGAGGTACAG
CCAGACCTGCAAACATGGAATAGCATCATGAATGCTGCAGATGCAGCAGG
TGATGTCAAGAGGGCAGACCAGCTGTACAGCGATGCTCTGTTGTCGGGTG
CTGTCAAGCCATACGCG
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Coding sequence (CDS) from alignment at Contig_167:160250..162366-

>mRNA_16947 ID=mRNA_16947|Name=jgi.p|Trimin1|148461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_167:160250..162366- (Tribonema minus UTEX_B_3156 )
CTGTTGCCTGACGTCATGGCCTACACTTCTCTGATCAACTGCTATGCAAC
AGCAAAAGACCCTGGAAAGGCGGAGGCAGCTCTTGCGGAGATGTGCCGGT
CTGCCGTCAAACCAAATACCATCGCTTTCAGCAGCGTCATGAAAGCATAC
ATTGAGATGCAGCGCCTGGACGAAGCAGAGCATGTCATCAGCAGGATGCG
AGCTGCAGAGGTACAGCCAGACCTGCAAACATGGAATAGCATCATGAATG
CTGCAGATGCAGCAGGTGATGTCAAGAGGGCAGACCAGCTGTACAGCGAT
GCTCTGTTGTCGGGTGCTGTCAAGCCATACGCG
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