Trimin1|147979|gw1.15.249.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|147979
Unique Name	Trimin1\|147979\|gw1.15.249.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	128

Homology

[Close]

BLAST of jgi.p|Trimin1|147979 vs. uniprot
Match: A0A835ZEU3_9STRA (RGS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEU3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 5.740e-86
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0

Query:    1 RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV 128
            RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV
Sbjct:    1 RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV 128

[Close]

BLAST of jgi.p|Trimin1|147979 vs. uniprot
Match: A0A835Z5Z7_9STRA (RGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.540e-9
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 0

Query:   14 VLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSME---LRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEF 117
            +L  L  Y  RT   E++EF++      ++P          +   ++   YI  G DKEVNL A  + +   +V   +P  F +AA EI  + ++D+WP+FL SPE+
Sbjct:  141 LLQALLAYTDRTLCTESVEFVMDCVDFLQMPEDEWADGPKAKRRTEICNTYIKIGSDKEVNLGAKQRLECLRMVAAQEPACFTEAAAEIRHILISDVWPKFLHSPEY 247

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|147979 vs. uniprot

BLAST of jgi.p|Trimin1|147979 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZEU3_9STRA	5.740e-86	100.00	RGS domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A835Z5Z7_9STRA	2.540e-9	31.78	RGS domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016137	RGS domain	PRINTS	PR01301	RGSPROTEIN	coord: 23..41 score: 26.09 coord: 95..114 score: 41.96 coord: 53..76 score: 19.93
IPR016137	RGS domain	SMART	SM00315	RGS_3	coord: 4..121 e-value: 1.8E-9 score: 47.5
IPR016137	RGS domain	PFAM	PF00615	RGS	coord: 6..119 e-value: 3.0E-13 score: 50.1
IPR016137	RGS domain	PROSITE	PS50132	RGS	coord: 4..121 score: 11.069004
IPR044926	RGS, subdomain 2	GENE3D	1.10.167.10		coord: 1..127 e-value: 4.3E-21 score: 77.0
None	No IPR available	PANTHER	PTHR10845	REGULATOR OF G PROTEIN SIGNALING	coord: 21..120
None	No IPR available	CDD	cd07440	RGS	coord: 21..118 e-value: 1.2848E-12 score: 57.7862
IPR036305	RGS domain superfamily	SUPERFAMILY	48097	Regulator of G-protein signaling, RGS	coord: 5..118

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_15	contig	Contig_15:881430..882018 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|147979	mRNA_3949	Tribonema minus UTEX_B_3156	mRNA	Contig_15 881430..882018 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|147979|gw1.15.249.1 ID=Trimin1|147979|gw1.15.249.1|Name=jgi.p|Trimin1|147979|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMEL
RQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIY
KLTLTDIWPRFLLSPEFLAIAHRKELRV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016137	RGS
IPR044926	RGS_subdomain_2
IPR036305	RGS_sf