mRNA_3949 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147979
Unique NamemRNA_3949
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|147979 vs. uniprot
Match: A0A835ZEU3_9STRA (RGS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEU3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 5.740e-86
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV 384
            RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV
Sbjct:    1 RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMELRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEFLAIAHRKELRV 128
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BLAST of jgi.p|Trimin1|147979 vs. uniprot
Match: A0A835Z5Z7_9STRA (RGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.540e-9
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:   40 VLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSME---LRQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIYKLTLTDIWPRFLLSPEF 351
            +L  L  Y  RT   E++EF++      ++P          +   ++   YI  G DKEVNL A  + +   +V   +P  F +AA EI  + ++D+WP+FL SPE+
Sbjct:  141 LLQALLAYTDRTLCTESVEFVMDCVDFLQMPEDEWADGPKAKRRTEICNTYIKIGSDKEVNLGAKQRLECLRMVAAQEPACFTEAAAEIRHILISDVWPKFLHSPEY 247
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147979 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZEU3_9STRA5.740e-86100.00RGS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z5Z7_9STRA2.540e-931.78RGS domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:881430..882018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147979|gw1.15.249.1
BRITEko00000,ko00001
KEGG Pathwayko04360,map04360
KEGG koko:K07524,ko:K16449
GOsGO:0000188,GO:0001505,GO:0001558,GO:0001932,GO:0001933,GO:0001965,GO:0001975,GO:0002027,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006469,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008016,GO:0008047,GO:0008150,GO:0008277,GO:0009410,GO:0009636,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010460,GO:0010563,GO:0010605,GO:0010611,GO:0010614,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010958,GO:0010959,GO:0014070,GO:0014072,GO:0014075,GO:0014741,GO:0014743,GO:0016020,GO:0016202,GO:0019220,GO:0019222,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030234,GO:0030308,GO:0030695,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031644,GO:0031646,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032890,GO:0032891,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042220,GO:0042221,GO:0042325,GO:0042326,GO:0042391,GO:0042493,GO:0043085,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043266,GO:0043267,GO:0043269,GO:0043271,GO:0043278,GO:0043279,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043502,GO:0043547,GO:0043549,GO:0044057,GO:0044070,GO:0044092,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0045595,GO:0045596,GO:0045744,GO:0045823,GO:0045843,GO:0045859,GO:0045926,GO:0045936,GO:0046620,GO:0046621,GO:0046677,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050804,GO:0050806,GO:0050896,GO:0051049,GO:0051051,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051493,GO:0051580,GO:0051581,GO:0051588,GO:0051589,GO:0051716,GO:0051924,GO:0051952,GO:0051953,GO:0051955,GO:0051956,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0060159,GO:0060160,GO:0060255,GO:0060284,GO:0060322,GO:0060359,GO:0060420,GO:0060589,GO:0061050,GO:0061052,GO:0061117,GO:0061548,GO:0065007,GO:0065008,GO:0065009,GO:0071900,GO:0071901,GO:0071944,GO:0072347,GO:0080090,GO:0090257,GO:0097305,GO:0097366,GO:0098772,GO:0098815,GO:0099177,GO:0110053,GO:1900923,GO:1900924,GO:1901379,GO:1901380,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1902531,GO:1902532,GO:1902903,GO:1903522,GO:1903524,GO:1903789,GO:1903792,GO:1903959,GO:1903960,GO:1904062,GO:1904063,GO:1905207,GO:1905208,GO:1990791,GO:2000026,GO:2000463,GO:2000725,GO:2000726,GO:2001023,GO:2001024
Preferred nameRGS4
Descriptionregulator of G-protein
COG categoryT
Max annot lvl33208|Metazoa
EggNOG OGsKOG3589@1|root,KOG3589@2759|Eukaryota,39TBD@33154|Opisthokonta,3B9X8@33208|Metazoa,3CXHD@33213|Bilateria,48BVC@7711|Chordata,48UUE@7742|Vertebrata,4A3F0@7898|Actinopterygii
Evalue8.43e-10
Seed ortholog8083.ENSXMAP00000005786
Hectar predicted targeting categoryother localisation
TranscriptId148301
TrackFilteredModels1
ProteinId147979
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147979gene_3949Tribonema minus UTEX_B_3156 geneContig_15 881430..882018 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3949_1exon_3949_1Tribonema minus UTEX_B_3156 exonContig_15 881430..881503 +
exon_3949_2exon_3949_2Tribonema minus UTEX_B_3156 exonContig_15 881606..881825 +
exon_3949_3exon_3949_3Tribonema minus UTEX_B_3156 exonContig_15 881929..882018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3949CDS_3949Tribonema minus UTEX_B_3156 CDSContig_15 881430..881503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147979Trimin1|147979|gw1.15.249.1Tribonema minus UTEX_B_3156 polypeptideContig_15 881430..882018 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3949 ID=mRNA_3949|Name=jgi.p|Trimin1|147979|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_15:881430..882018+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGACAACTGGACCTACAGAGTGCACTATGCACTCCTCTTGTATTGACGCA
GCTGGAGGGCTACTGTGCAAGAACGCACACCGCAGAGAATCTGGAGTTTC
TGCTCAAAGCTGATGGCGTCAAGAGGCTGCCTCCGCAGTCCATGGAGCTG
AGGCAGGCGCTGCAGGACGTGGCGCGGGTGTACATCGCAGCAGGCGGCGA
CAAGGAGGTGAACCTGAGCGCGGCGACCAAGGCAAAGACAAGGTTGCTGG
TGGAGCAACACGACCCCTGCAGCTTCGATCAGGCCGCCAAAGAGATCTAC
AAGCTCACGCTCACGGACATCTGGCCGCGCTTCCTGCTGAGCCCCGAGTT
CCTGGCGATCGCGCACCGCAAGGAGCTGCGCGTC
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protein sequence of jgi.p|Trimin1|147979

>Trimin1|147979|gw1.15.249.1 ID=Trimin1|147979|gw1.15.249.1|Name=jgi.p|Trimin1|147979|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
RQLDLQSALCTPLVLTQLEGYCARTHTAENLEFLLKADGVKRLPPQSMEL
RQALQDVARVYIAAGGDKEVNLSAATKAKTRLLVEQHDPCSFDQAAKEIY
KLTLTDIWPRFLLSPEFLAIAHRKELRV
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mRNA from alignment at Contig_15:881430..882018+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3949 ID=mRNA_3949|Name=jgi.p|Trimin1|147979|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=589bp|location=Sequence derived from alignment at Contig_15:881430..882018+ (Tribonema minus UTEX_B_3156 )
CGACAACTGGACCTACAGAGTGCACTATGCACTCCTCTTGTATTGACGCA
GCTGGAGGGCTACTGTGCAAGAACGTGAGTTGACGACGCTTAACCGCCTG
CGTAGGCGAGGCTCTCTCGCTGTCAGCATGACACTGACGGCAGCAGCACT
TCGTGATCTCCATGTGTACCCCACAGGCACACCGCAGAGAATCTGGAGTT
TCTGCTCAAAGCTGATGGCGTCAAGAGGCTGCCTCCGCAGTCCATGGAGC
TGAGGCAGGCGCTGCAGGACGTGGCGCGGGTGTACATCGCAGCAGGCGGC
GACAAGGAGGTGAACCTGAGCGCGGCGACCAAGGCAAAGACAAGGTTGCT
GGTGGAGCAACACGACCCCTGCAGCTTCGATCAGGCCGCCAAAGAGGTGA
GACCCGGCTAGCAGGCCACATGAAATCTCAGCAAAATGCCTACACATGCC
CCTAGGGCCACTCAGAGCATCTCCGCTGCCCCGCTCGCCGCGCCGCCAGA
TCTACAAGCTCACGCTCACGGACATCTGGCCGCGCTTCCTGCTGAGCCCC
GAGTTCCTGGCGATCGCGCACCGCAAGGAGCTGCGCGTC
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Coding sequence (CDS) from alignment at Contig_15:881430..882018+

>mRNA_3949 ID=mRNA_3949|Name=jgi.p|Trimin1|147979|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_15:881430..882018+ (Tribonema minus UTEX_B_3156 )
CGACAACTGGACCTACAGAGTGCACTATGCACTCCTCTTGTATTGACGCA
GCTGGAGGGCTACTGTGCAAGAACGCACACCGCAGAGAATCTGGAGTTTC
TGCTCAAAGCTGATGGCGTCAAGAGGCTGCCTCCGCAGTCCATGGAGCTG
AGGCAGGCGCTGCAGGACGTGGCGCGGGTGTACATCGCAGCAGGCGGCGA
CAAGGAGGTGAACCTGAGCGCGGCGACCAAGGCAAAGACAAGGTTGCTGG
TGGAGCAACACGACCCCTGCAGCTTCGATCAGGCCGCCAAAGAGATCTAC
AAGCTCACGCTCACGGACATCTGGCCGCGCTTCCTGCTGAGCCCCGAGTT
CCTGGCGATCGCGCACCGCAAGGAGCTGCGCGTC
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