Trimin1|147899|gw1.19.140.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|147899
Unique NameTrimin1|147899|gw1.19.140.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length105
Homology
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A836CHJ6_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ6_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.200e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
Query:    1 MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 105
            MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL
Sbjct:    1 MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 105          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A8J5XAX4_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAX4_DIALT)

HSP 1 Score: 103 bits (256), Expect = 2.360e-24
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 0
Query:    9 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTL-PLP----SVTYDISCPADFDHAL 105
            GK + TA+ VLR G LAL G P +G  A+LLLL P +GRRHQLRVHC+L+GHPIVGD +YA D  +YR+FLHA RL L P+P     +    +C ADFD AL
Sbjct:  197 GKPAQTALRVLRHGRLALHG-PHEGRDASLLLLEPRTGRRHQLRVHCQLIGHPIVGDLSYAGDGESYRLFLHAHRLRLEPMPVDGGMLDATAAC-ADFDDAL 296          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A7S0MYQ1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MYQ1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-19
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0
Query:    5 EDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCP 98
            E  +GK S T V VL RGTLAL+G P KG+ A+ +L+RP SGRRHQ+R+H +L GH IVGDA Y++D  ++RMFL A  L +PL     D+  P
Sbjct:  286 EGEEGKQSQTQVEVLARGTLALEG-PHKGKPASKVLVRPLSGRRHQIRLHLQLSGHSIVGDAAYSEDRDSHRMFLLAHALHVPLKERPLDLHVP 378          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: B7P2L1_IXOSC (Ribosomal pseudouridine synthase, putative n=4 Tax=Ixodes TaxID=6944 RepID=B7P2L1_IXOSC)

HSP 1 Score: 88.6 bits (218), Expect = 3.580e-19
Identity = 51/93 (54.84%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   14 TAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCP----ADFD 102
            T + VL RG L       KG  A  +LLRP +GRRHQLRVHC  LGH IVGD TY +DA + RMFLHA RL LP    T D+  P    ADFD
Sbjct:  150 TRLLVLWRGLL-------KGRPATKVLLRPVTGRRHQLRVHCASLGHTIVGDFTYGEDASSRRMFLHACRLVLPTEVETLDVETPDPFAADFD 235          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A293LSY8_ORNER (Ribosomal pseudouridine synthase (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LSY8_ORNER)

HSP 1 Score: 87.4 bits (215), Expect = 9.220e-19
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 0
Query:   12 SATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 105
            S T + VL+RG L        GE A  ++L+P +GRRHQLR+HC +LGHPIVGD TY +D  ++RMFLHA RL +P      DI+    F  A+
Sbjct:  137 SLTRLLVLQRGLL-------NGEAATKVMLKPVTGRRHQLRIHCDVLGHPIVGDFTYGEDETSHRMFLHACRLVVPTEVENVDITTEDPFTAAV 223          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A0M0JGI3_9EUKA (RNA pseudouridylate synthase domain-containing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGI3_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-17
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0
Query:    7 GQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPL 88
            G GKA+ T V V  RG L +  H   G  A+LL L P +GRRHQLR+HC    H IVGDATYA+D + YRMFLHAA L LPL
Sbjct:  196 GGGKAAQTDVVVGARGVLRVGQHA--GREASLLWLFPHTGRRHQLRLHCSHHQHAIVGDATYAEDKLMYRMFLHAAALELPL 275          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A2R5LAY8_9ACAR (Putative ribosomal pseudouridine synthase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LAY8_9ACAR)

HSP 1 Score: 83.2 bits (204), Expect = 3.110e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0
Query:   14 TAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDI 95
            T + VL+RG L+       G+ A  +LL+P +GRRHQLR+HC +LGHPIVGD TY +D  ++RMFLHA RL +P      D+
Sbjct:  137 TRLLVLQRGLLS-------GKPATKVLLKPITGRRHQLRIHCDVLGHPIVGDFTYGEDKTSHRMFLHACRLVVPTEVEDVDV 211          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A7S0E595_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E595_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.770e-17
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 0
Query:    9 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARL---TLPLPSVTYDISCP 98
            GK++ T   V  RG L+L   P  G  A L+ L P +GRRHQLR+H + LGHPIVGD TYA D ++YRMFLHAA L   TL LP   +    P
Sbjct:  140 GKSARTYAEVACRGRLSLP--PYTGRLATLMWLTPHTGRRHQLRLHMEHLGHPIVGDYTYAADRLSYRMFLHAASLLTLTLILPRTMFRTRAP 230          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A0G4FEV8_VITBC (PseudoU_synth_2 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEV8_VITBC)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    9 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYA-----DDAIAYRMFLHAARLTLP 87
            GK S TAV VL+R  LAL+G P KG   A LLL P++GRRHQLR+HC+ +GHPIVGD  Y+      +  +YRM LHA RL LP
Sbjct:  247 GKPSQTAVKVLQRSHLALEG-PLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELP 329          
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: UPI00067E5D23 (RNA pseudouridylate synthase domain-containing protein 1-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067E5D23)

HSP 1 Score: 81.6 bits (200), Expect = 1.740e-16
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 0
Query:    8 QGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYAD--DAIAYRMFLHAARLTLPLPSVTYDISCPADF 101
            Q +A+ T V VL  G           + A ++LL+P +GRRHQLRVHC+ +GH I+GD TY+D  D+  +RMFLHA RL LPLP+   DI     F
Sbjct:  135 QSRAAQTRVLVLETGYYG-------SDPATVVLLKPITGRRHQLRVHCQSIGHTILGDYTYSDKRDSAPHRMFLHAVRLVLPLPAEPLDIQTSEPF 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHJ6_9STRA5.200e-69100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A8J5XAX4_DIALT2.360e-2457.84PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S0MYQ1_9CHLO1.180e-1953.19Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
B7P2L1_IXOSC3.580e-1954.84Ribosomal pseudouridine synthase, putative n=4 Tax... [more]
A0A293LSY8_ORNER9.220e-1947.87Ribosomal pseudouridine synthase (Fragment) n=1 Ta... [more]
A0A0M0JGI3_9EUKA1.410e-1758.54RNA pseudouridylate synthase domain-containing pro... [more]
A0A2R5LAY8_9ACAR3.110e-1750.00Putative ribosomal pseudouridine synthase (Fragmen... [more]
A0A7S0E595_9EUKA7.770e-1751.61Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A0G4FEV8_VITBC1.120e-1657.14PseudoU_synth_2 domain-containing protein n=3 Tax=... [more]
UPI00067E5D231.740e-1646.88RNA pseudouridylate synthase domain-containing pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 7..56
e-value: 2.0E-6
score: 28.0
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 9..86
e-value: 2.755E-20
score: 78.5333
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 1..101
e-value: 2.9E-21
score: 78.1
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 9..101
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 9..101
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 8..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:65464..67074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147899mRNA_5453Tribonema minus UTEX_B_3156 mRNAContig_19 65464..67074 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|147899|gw1.19.140.1 ID=Trimin1|147899|gw1.19.140.1|Name=jgi.p|Trimin1|147899|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQ
LRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPAD
FDHAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf