mRNA_5453 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147899
Unique NamemRNA_5453
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A836CHJ6_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ6_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.200e-69
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 315
            MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL
Sbjct:    1 MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 105
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A8J5XAX4_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAX4_DIALT)

HSP 1 Score: 103 bits (256), Expect = 2.360e-24
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:   25 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTL-PLP----SVTYDISCPADFDHAL 315
            GK + TA+ VLR G LAL G P +G  A+LLLL P +GRRHQLRVHC+L+GHPIVGD +YA D  +YR+FLHA RL L P+P     +    +C ADFD AL
Sbjct:  197 GKPAQTALRVLRHGRLALHG-PHEGRDASLLLLEPRTGRRHQLRVHCQLIGHPIVGDLSYAGDGESYRLFLHAHRLRLEPMPVDGGMLDATAAC-ADFDDAL 296
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A7S0MYQ1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MYQ1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-19
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   13 EDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCP 294
            E  +GK S T V VL RGTLAL+G P KG+ A+ +L+RP SGRRHQ+R+H +L GH IVGDA Y++D  ++RMFL A  L +PL     D+  P
Sbjct:  286 EGEEGKQSQTQVEVLARGTLALEG-PHKGKPASKVLVRPLSGRRHQIRLHLQLSGHSIVGDAAYSEDRDSHRMFLLAHALHVPLKERPLDLHVP 378
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: B7P2L1_IXOSC (Ribosomal pseudouridine synthase, putative n=4 Tax=Ixodes TaxID=6944 RepID=B7P2L1_IXOSC)

HSP 1 Score: 88.6 bits (218), Expect = 3.580e-19
Identity = 51/93 (54.84%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   40 TAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCP----ADFD 306
            T + VL RG L       KG  A  +LLRP +GRRHQLRVHC  LGH IVGD TY +DA + RMFLHA RL LP    T D+  P    ADFD
Sbjct:  150 TRLLVLWRGLL-------KGRPATKVLLRPVTGRRHQLRVHCASLGHTIVGDFTYGEDASSRRMFLHACRLVLPTEVETLDVETPDPFAADFD 235
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A293LSY8_ORNER (Ribosomal pseudouridine synthase (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LSY8_ORNER)

HSP 1 Score: 87.4 bits (215), Expect = 9.220e-19
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   34 SATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPADFDHAL 315
            S T + VL+RG L        GE A  ++L+P +GRRHQLR+HC +LGHPIVGD TY +D  ++RMFLHA RL +P      DI+    F  A+
Sbjct:  137 SLTRLLVLQRGLL-------NGEAATKVMLKPVTGRRHQLRIHCDVLGHPIVGDFTYGEDETSHRMFLHACRLVVPTEVENVDITTEDPFTAAV 223
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A0M0JGI3_9EUKA (RNA pseudouridylate synthase domain-containing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGI3_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-17
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   19 GQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPL 264
            G GKA+ T V V  RG L +  H   G  A+LL L P +GRRHQLR+HC    H IVGDATYA+D + YRMFLHAA L LPL
Sbjct:  196 GGGKAAQTDVVVGARGVLRVGQHA--GREASLLWLFPHTGRRHQLRLHCSHHQHAIVGDATYAEDKLMYRMFLHAAALELPL 275
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A2R5LAY8_9ACAR (Putative ribosomal pseudouridine synthase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LAY8_9ACAR)

HSP 1 Score: 83.2 bits (204), Expect = 3.110e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   40 TAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDI 285
            T + VL+RG L+       G+ A  +LL+P +GRRHQLR+HC +LGHPIVGD TY +D  ++RMFLHA RL +P      D+
Sbjct:  137 TRLLVLQRGLLS-------GKPATKVLLKPITGRRHQLRIHCDVLGHPIVGDFTYGEDKTSHRMFLHACRLVVPTEVEDVDV 211
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A7S0E595_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E595_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.770e-17
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   25 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYADDAIAYRMFLHAARL---TLPLPSVTYDISCP 294
            GK++ T   V  RG L+L   P  G  A L+ L P +GRRHQLR+H + LGHPIVGD TYA D ++YRMFLHAA L   TL LP   +    P
Sbjct:  140 GKSARTYAEVACRGRLSLP--PYTGRLATLMWLTPHTGRRHQLRLHMEHLGHPIVGDYTYAADRLSYRMFLHAASLLTLTLILPRTMFRTRAP 230
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BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: A0A0G4FEV8_VITBC (PseudoU_synth_2 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEV8_VITBC)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   25 GKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYA-----DDAIAYRMFLHAARLTLP 261
            GK S TAV VL+R  LAL+G P KG   A LLL P++GRRHQLR+HC+ +GHPIVGD  Y+      +  +YRM LHA RL LP
Sbjct:  247 GKPSQTAVKVLQRSHLALEG-PLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELP 329
[Close]
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Match: UPI00067E5D23 (RNA pseudouridylate synthase domain-containing protein 1-like n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067E5D23)

HSP 1 Score: 81.6 bits (200), Expect = 1.740e-16
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   22 QGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQLRVHCKLLGHPIVGDATYAD--DAIAYRMFLHAARLTLPLPSVTYDISCPADF 303
            Q +A+ T V VL  G           + A ++LL+P +GRRHQLRVHC+ +GH I+GD TY+D  D+  +RMFLHA RL LPLP+   DI     F
Sbjct:  135 QSRAAQTRVLVLETGYYG-------SDPATVVLLKPITGRRHQLRVHCQSIGHTILGDYTYSDKRDSAPHRMFLHAVRLVLPLPAEPLDIQTSEPF 223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147899 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHJ6_9STRA5.200e-69100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A8J5XAX4_DIALT2.360e-2457.84PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S0MYQ1_9CHLO1.180e-1953.19Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
B7P2L1_IXOSC3.580e-1954.84Ribosomal pseudouridine synthase, putative n=4 Tax... [more]
A0A293LSY8_ORNER9.220e-1947.87Ribosomal pseudouridine synthase (Fragment) n=1 Ta... [more]
A0A0M0JGI3_9EUKA1.410e-1758.54RNA pseudouridylate synthase domain-containing pro... [more]
A0A2R5LAY8_9ACAR3.110e-1750.00Putative ribosomal pseudouridine synthase (Fragmen... [more]
A0A7S0E595_9EUKA7.770e-1751.61Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A0G4FEV8_VITBC1.120e-1657.14PseudoU_synth_2 domain-containing protein n=3 Tax=... [more]
UPI00067E5D231.740e-1646.88RNA pseudouridylate synthase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:65464..67074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147899|gw1.19.140.1
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Preferred nameRPUSD1
Descriptionpseudouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Evalue4.65e-17
Seed ortholog242159.ABO98070
Hectar predicted targeting categoryother localisation
TranscriptId148221
TrackFilteredModels1
ProteinId147899
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147899gene_5453Tribonema minus UTEX_B_3156 geneContig_19 65464..67074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147899Trimin1|147899|gw1.19.140.1Tribonema minus UTEX_B_3156 polypeptideContig_19 65464..67074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5453_2exon_5453_2Tribonema minus UTEX_B_3156 exonContig_19 65464..65592 -
exon_5453_1exon_5453_1Tribonema minus UTEX_B_3156 exonContig_19 66889..67074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5453CDS_5453Tribonema minus UTEX_B_3156 CDSContig_19 66889..67074 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5453 ID=mRNA_5453|Name=jgi.p|Trimin1|147899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_19:65464..67074- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTGGGGGAGGATGGCCAGGGGAAAGCGTCAGCGACCGCCGTCAC
CGTGCTGCGCAGGGGGACGCTCGCTCTCCAGGGGCACCCGCGGAAGGGGG
AGCGCGCGGCGCTGCTGCTGCTGCGGCCGTCCAGCGGGCGGCGCCACCAG
CTGCGCGTCCACTGCAAGCTGCTGGGGCACCCCATCGTCGGCGACGCGAC
ATACGCCGACGACGCCATCGCGTACCGCATGTTCCTGCACGCCGCGCGCC
TGACGCTGCCGCTGCCGTCCGTCACGTATGACATCTCGTGCCCCGCTGAC
TTTGACCACGCGCTC
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protein sequence of jgi.p|Trimin1|147899

>Trimin1|147899|gw1.19.140.1 ID=Trimin1|147899|gw1.19.140.1|Name=jgi.p|Trimin1|147899|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MAVGEDGQGKASATAVTVLRRGTLALQGHPRKGERAALLLLRPSSGRRHQ
LRVHCKLLGHPIVGDATYADDAIAYRMFLHAARLTLPLPSVTYDISCPAD
FDHAL
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mRNA from alignment at Contig_19:65464..67074-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5453 ID=mRNA_5453|Name=jgi.p|Trimin1|147899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1611bp|location=Sequence derived from alignment at Contig_19:65464..67074- (Tribonema minus UTEX_B_3156 )
ATGGCGGTGGGGGAGGATGGCCAGGGGAAAGCGTCAGCGACCGCCGTCAC
CGTGCTGCGCAGGGGGACGCTCGCTCTCCAGGGGCACCCGCGGAAGGGGG
AGCGCGCGGCGCTGCTGCTGCTGCGGCCGTCCAGCGGGCGGCGCCACCAG
CTGCGCGTCCACTGCAAGCTGCTGGGGCACCCCATCGTGAGCTCAAGTGT
TGCTGATGGTTGAAGTTTGTGAGTTGAAGTTAAAGGCTTCTCGTTGCTGC
TCTGTCGCCTTCGCTGCTGCTGCAGCCGTCCAGCGGGCGGCAGCACCAGC
TGCGCGTCCACTGCAAGCTGCTGGGGCACCCCATCGTGAGTTGCAAGTTT
TCTTTGGTGAAAGGTTGTGAGTTGAAGTTAAAGGCTTCTCGTTGCTGCTC
TGTCGCCTTCGCTGCTACTGCGGCCGTCCAGCGGCCGGCGGCACCAGCTG
CGCGTCCACTGCAAGCTGCTGGGCCACCCTATCGTGAGTTGAAGTGTTGC
TGATGGTTGAAGTTTGTGAGTTGAAGTTGTTGCTGGGCACATATTGAGAG
GCTTACCATGCTGATTTGTTGCTGCTGCTGCGGCTACTGAATGGGCGGCG
GCGCCAGCTGCGCGTCCACTGCAAGCTGGGACATCCTAGCTGTTATGGCC
GGTGAGCGGCCAGCGGCTCCAGTGCGCTTCCGAAGCAAGCCGCTACAGTA
CTCTATTGTGAGTTGCAGCGTCTGGGCGCACCGCACCGAACTTGGAGGTC
TGTCTGCGCGTCCGTGCATGAGAGCTTCACTGTATTGCAATTCTTTTTTG
AACTTCACCAAAGAGGGCGTCTGGCCGCTGTCATTGACGATGATGCACGG
CAGCAGGCACCAGCTGCGTGTCTACTGCAGAGAGCTGTCGCTACTGCCTC
TGTACTCCAAACACATTGAACAAAGTTGACACTCTGCGCGCCTGTTCCCC
ATCGTGAGTCTCACCGTTTCTGCGCATTAAACAAAGCGGGTCAGATCTGT
GTTTGCGTGAATGGCGGTTTCATTAGCTTGATGAGCACAGGAGTGTTGCC
ACGGTGACCTTGAAGTGAGAGGATCGCATGATGGTGCTGTTAACATCAGT
GGCTGGTAGCGAGTGTGCTGCTGCGTCCGTGCTGCGGACTGCTGAGATGA
CCACACAAAGTGTGGTACCCTAATGTGAGGATGCACAAGATATGAAGTGA
GCTACAGTAGCTGGTGTGCTTCAACAGTTGTGTTGCACTTTAGAGCCAGC
AAATCTGACATGCATTGGAGGCACGGCATCAGCATAGTATCCTATCCGCA
GCCTGGATGGCACTGAGATTCAGCGTTAAAGTTCAGCATTTCCCATCGCC
GAGCGCACCGATCCCCTGCGCGTGTGCTGCGCCCCCGTTATCTGTGCTGC
CCGTTTTCACTTTTTATATCTGCCCACCCAGTTTTCACTTTTTTTTCTTT
CCTTTTGCTTGTTTTTCACTTTTTTTTTTCAGGTCGGCGACGCGACATAC
GCCGACGACGCCATCGCGTACCGCATGTTCCTGCACGCCGCGCGCCTGAC
GCTGCCGCTGCCGTCCGTCACGTATGACATCTCGTGCCCCGCTGACTTTG
ACCACGCGCTC
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Coding sequence (CDS) from alignment at Contig_19:65464..67074-

>mRNA_5453 ID=mRNA_5453|Name=jgi.p|Trimin1|147899|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_19:65464..67074- (Tribonema minus UTEX_B_3156 )
ATGGCGGTGGGGGAGGATGGCCAGGGGAAAGCGTCAGCGACCGCCGTCAC
CGTGCTGCGCAGGGGGACGCTCGCTCTCCAGGGGCACCCGCGGAAGGGGG
AGCGCGCGGCGCTGCTGCTGCTGCGGCCGTCCAGCGGGCGGCGCCACCAG
CTGCGCGTCCACTGCAAGCTGCTGGGGCACCCCATCGTCGGCGACGCGAC
ATACGCCGACGACGCCATCGCGTACCGCATGTTCCTGCACGCCGCGCGCC
TGACGCTGCCGCTGCCGTCCGTCACGTATGACATCTCGTGCCCCGCTGAC
TTTGACCACGCGCTC
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