Trimin1|146909|gw1.167.81.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|146909
Unique NameTrimin1|146909|gw1.167.81.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length84
Homology
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.810e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF
Sbjct:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.060e-24
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0
Query:    5 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            G +P ++TM TLL  AGA G+V I  D+WRE+H  +LVP+V+SYNT INCYA  KDPGKAEEVLAEMI+SAA+  +AI F
Sbjct:   81 GPRPTVITMTTLLDHAGA-GEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISF 159          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.120e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0
Query:    5 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            G QPNLV M TLL +AG AG+V I + IW E+ D +L P+V++YN LI CYA AK P K E VLAE I+SAAVKP+AI+F
Sbjct:  156 GVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMF 235          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.350e-23
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    4 SGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPN 80
            +G+QP + TM TLL +AG AG V I + IWRE+ + +L P V  Y+  I CYAMAK P KAEEVLAEM++SA +KPN
Sbjct:   34 TGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 110          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.160e-22
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAI 82
            +++ G QP+ V M TLL +AG AG++GI + IWRE+ D +L P+V++YN LI CYA A+ P KAE+V+AEM +SAAVKP+AI
Sbjct:  259 LKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAI 340          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.030e-22
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 0
Query:    5 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            G  P+LV M TLL +AG AG+V I + IW E  D +L PN R+YN LINCYA A+ P KAE VLAEM++SAAVKP+AI F
Sbjct:  340 GVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISF 419          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z0L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.960e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0
Query:   29 VQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            V+DI RELHD +LVP+V SYNTLINC+A AKDPGKAEEVLAEM++S AVKPN I F
Sbjct:  142 VEDIRRELHDRQLVPDVSSYNTLINCFATAKDPGKAEEVLAEMVQSTAVKPNVISF 197          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.480e-19
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            MRASG +P+++ +N +L  AG+AG   + + +WREL DL+L P   SYN L+ CYA+AKDP K E VL EM +SA  KP+A  F
Sbjct:  824 MRASGHEPDVIAINDMLAHAGSAGNRDVAEALWRELRDLQLQPTRSSYNALVRCYAVAKDPEKEEAVLKEMSESACHKPDASAF 907          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.600e-18
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 0
Query:    5 GQQPNLVTMNTLLTSAG-----AAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            G +P++ + N LL + G     AAG++GI + IW E+ + +L P+V++YN LI CY  AK P KAEEVLAEMI+SAAVKP+AI+F
Sbjct:  196 GIKPDVRSWNVLLNAIGRTGQVAAGELGIAEGIWSEMLEHQLAPDVKTYNALIMCYTTAKQPDKAEEVLAEMIQSAAVKPDAIMF 280          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.430e-17
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:   25 KVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
            ++G+ + IWRE+ D +L P+V SY  LI CYAMAK P KAE+VLAEM++SA +KPNAI F
Sbjct:   58 ELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITF 117          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836CJV6_9STRA2.810e-52100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA1.060e-2463.75PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA5.120e-2361.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z497_9STRA6.350e-2357.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA1.160e-2256.10PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z1B2_9STRA8.030e-2261.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z0L4_9STRA5.960e-2076.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHU7_9STRA2.480e-1951.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWM4_9STRA2.600e-1852.94Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z6J3_9STRA7.430e-1760.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 41..71
e-value: 2.9E-7
score: 30.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 47..80
e-value: 8.0E-9
score: 33.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..79
score: 10.117337
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..84
e-value: 7.6E-19
score: 70.2
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 1..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:123607..123858 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146909mRNA_16945Tribonema minus UTEX_B_3156 mRNAContig_167 123607..123858 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|146909|gw1.167.81.1 ID=Trimin1|146909|gw1.167.81.1|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNT
LINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf