mRNA_16945 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146909
Unique NamemRNA_16945
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.810e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF
Sbjct:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.060e-24
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            G +P ++TM TLL  AGA G+V I  D+WRE+H  +LVP+V+SYNT INCYA  KDPGKAEEVLAEMI+SAA+  +AI F
Sbjct:   81 GPRPTVITMTTLLDHAGA-GEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISF 159          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.120e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            G QPNLV M TLL +AG AG+V I + IW E+ D +L P+V++YN LI CYA AK P K E VLAE I+SAAVKP+AI+F
Sbjct:  156 GVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMF 235          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.350e-23
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   10 SGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPN 240
            +G+QP + TM TLL +AG AG V I + IWRE+ + +L P V  Y+  I CYAMAK P KAEEVLAEM++SA +KPN
Sbjct:   34 TGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 110          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.160e-22
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAI 246
            +++ G QP+ V M TLL +AG AG++GI + IWRE+ D +L P+V++YN LI CYA A+ P KAE+V+AEM +SAAVKP+AI
Sbjct:  259 LKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAI 340          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.030e-22
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            G  P+LV M TLL +AG AG+V I + IW E  D +L PN R+YN LINCYA A+ P KAE VLAEM++SAAVKP+AI F
Sbjct:  340 GVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISF 419          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z0L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.960e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   85 VQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            V+DI RELHD +LVP+V SYNTLINC+A AKDPGKAEEVLAEM++S AVKPN I F
Sbjct:  142 VEDIRRELHDRQLVPDVSSYNTLINCFATAKDPGKAEEVLAEMVQSTAVKPNVISF 197          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.480e-19
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            MRASG +P+++ +N +L  AG+AG   + + +WREL DL+L P   SYN L+ CYA+AKDP K E VL EM +SA  KP+A  F
Sbjct:  824 MRASGHEPDVIAINDMLAHAGSAGNRDVAEALWRELRDLQLQPTRSSYNALVRCYAVAKDPEKEEAVLKEMSESACHKPDASAF 907          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.600e-18
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   13 GQQPNLVTMNTLLTSAG-----AAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            G +P++ + N LL + G     AAG++GI + IW E+ + +L P+V++YN LI CY  AK P KAEEVLAEMI+SAAVKP+AI+F
Sbjct:  196 GIKPDVRSWNVLLNAIGRTGQVAAGELGIAEGIWSEMLEHQLAPDVKTYNALIMCYTTAKQPDKAEEVLAEMIQSAAVKPDAIMF 280          
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.430e-17
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   73 KVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252
            ++G+ + IWRE+ D +L P+V SY  LI CYAMAK P KAE+VLAEM++SA +KPNAI F
Sbjct:   58 ELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITF 117          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A836CJV6_9STRA2.810e-52100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA1.060e-2463.75PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA5.120e-2361.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z497_9STRA6.350e-2357.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA1.160e-2256.10PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z1B2_9STRA8.030e-2261.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z0L4_9STRA5.960e-2076.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHU7_9STRA2.480e-1951.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWM4_9STRA2.600e-1852.94Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z6J3_9STRA7.430e-1760.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:123607..123858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146909|gw1.167.81.1
DescriptionPPR repeat
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37Z15@33090|Viridiplantae,3GPAG@35493|Streptophyta,3M299@4447|Liliopsida
Evalue1.91e-06
Seed ortholog42345.XP_008803169.1
Hectar predicted targeting categoryother localisation
TranscriptId147231
TrackFilteredModels1
ProteinId146909
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146909gene_16945Tribonema minus UTEX_B_3156 geneContig_167 123607..123858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16945_1exon_16945_1Tribonema minus UTEX_B_3156 exonContig_167 123607..123858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16945CDS_16945Tribonema minus UTEX_B_3156 CDSContig_167 123607..123858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146909Trimin1|146909|gw1.167.81.1Tribonema minus UTEX_B_3156 polypeptideContig_167 123607..123858 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCCAGTGGACAGCAGCCTAATCTGGTCACCATGAACACCCTGCT
TACCAGTGCTGGTGCAGCGGGAAAGGTCGGCATTGTTCAGGACATATGGA
GGGAGCTGCATGATCTCAAGCTAGTGCCCAATGTGAGGAGCTACAACACG
CTGATCAACTGCTATGCAATGGCAAAAGACCCGGGCAAGGCTGAGGAAGT
GCTTGCGGAAATGATCAAGTCTGCTGCCGTCAAGCCAAATGCCATCATCT
TC
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protein sequence of jgi.p|Trimin1|146909

>Trimin1|146909|gw1.167.81.1 ID=Trimin1|146909|gw1.167.81.1|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp
MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNT
LINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF
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mRNA from alignment at Contig_167:123607..123858-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )
ATGCGTGCCAGTGGACAGCAGCCTAATCTGGTCACCATGAACACCCTGCT TACCAGTGCTGGTGCAGCGGGAAAGGTCGGCATTGTTCAGGACATATGGA GGGAGCTGCATGATCTCAAGCTAGTGCCCAATGTGAGGAGCTACAACACG CTGATCAACTGCTATGCAATGGCAAAAGACCCGGGCAAGGCTGAGGAAGT GCTTGCGGAAATGATCAAGTCTGCTGCCGTCAAGCCAAATGCCATCATCT TC
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Coding sequence (CDS) from alignment at Contig_167:123607..123858-

>mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )
ATGCGTGCCAGTGGACAGCAGCCTAATCTGGTCACCATGAACACCCTGCT
TACCAGTGCTGGTGCAGCGGGAAAGGTCGGCATTGTTCAGGACATATGGA
GGGAGCTGCATGATCTCAAGCTAGTGCCCAATGTGAGGAGCTACAACACG
CTGATCAACTGCTATGCAATGGCAAAAGACCCGGGCAAGGCTGAGGAAGT
GCTTGCGGAAATGATCAAGTCTGCTGCCGTCAAGCCAAATGCCATCATCT
TC
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