mRNA_16945 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CJV6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV6_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.810e-52 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 Query: 1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF Sbjct: 1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 84
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.060e-24 Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 G +P ++TM TLL AGA G+V I D+WRE+H +LVP+V+SYNT INCYA KDPGKAEEVLAEMI+SAA+ +AI F Sbjct: 81 GPRPTVITMTTLLDHAGA-GEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISF 159
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.120e-23 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 G QPNLV M TLL +AG AG+V I + IW E+ D +L P+V++YN LI CYA AK P K E VLAE I+SAAVKP+AI+F Sbjct: 156 GVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMF 235
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 6.350e-23 Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 Query: 10 SGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPN 240 +G+QP + TM TLL +AG AG V I + IWRE+ + +L P V Y+ I CYAMAK P KAEEVLAEM++SA +KPN Sbjct: 34 TGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 110
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.160e-22 Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 1 Query: 1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAI 246 +++ G QP+ V M TLL +AG AG++GI + IWRE+ D +L P+V++YN LI CYA A+ P KAE+V+AEM +SAAVKP+AI Sbjct: 259 LKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAI 340
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 8.030e-22 Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1 Query: 13 GQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 G P+LV M TLL +AG AG+V I + IW E D +L PN R+YN LINCYA A+ P KAE VLAEM++SAAVKP+AI F Sbjct: 340 GVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISF 419
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z0L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 5.960e-20 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 Query: 85 VQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 V+DI RELHD +LVP+V SYNTLINC+A AKDPGKAEEVLAEM++S AVKPN I F Sbjct: 142 VEDIRRELHDRQLVPDVSSYNTLINCFATAKDPGKAEEVLAEMVQSTAVKPNVISF 197
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A836CHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU7_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.480e-19 Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 1 MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 MRASG +P+++ +N +L AG+AG + + +WREL DL+L P SYN L+ CYA+AKDP K E VL EM +SA KP+A F Sbjct: 824 MRASGHEPDVIAINDMLAHAGSAGNRDVAEALWRELRDLQLQPTRSSYNALVRCYAVAKDPEKEEAVLKEMSESACHKPDASAF 907
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.600e-18 Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 13 GQQPNLVTMNTLLTSAG-----AAGKVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 G +P++ + N LL + G AAG++GI + IW E+ + +L P+V++YN LI CY AK P KAEEVLAEMI+SAAVKP+AI+F Sbjct: 196 GIKPDVRSWNVLLNAIGRTGQVAAGELGIAEGIWSEMLEHQLAPDVKTYNALIMCYTTAKQPDKAEEVLAEMIQSAAVKPDAIMF 280
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 7.430e-17 Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 73 KVGIVQDIWRELHDLKLVPNVRSYNTLINCYAMAKDPGKAEEVLAEMIKSAAVKPNAIIF 252 ++G+ + IWRE+ D +L P+V SY LI CYAMAK P KAE+VLAEM++SA +KPNAI F Sbjct: 58 ELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITF 117 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146909 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGTGCCAGTGGACAGCAGCCTAATCTGGTCACCATGAACACCCTGCTback to top protein sequence of jgi.p|Trimin1|146909 >Trimin1|146909|gw1.167.81.1 ID=Trimin1|146909|gw1.167.81.1|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=84bp MRASGQQPNLVTMNTLLTSAGAAGKVGIVQDIWRELHDLKLVPNVRSYNTback to top mRNA from alignment at Contig_167:123607..123858- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_167:123607..123858- >mRNA_16945 ID=mRNA_16945|Name=jgi.p|Trimin1|146909|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=252bp|location=Sequence derived from alignment at Contig_167:123607..123858- (Tribonema minus UTEX_B_3156 )back to top |