Trimin1|14202|CE14201_83 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|14202
Unique Name	Trimin1\|14202\|CE14201_83
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	282

Homology

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A835ZCM9_9STRA (Ribosomal protein S5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM9_9STRA)

HSP 1 Score: 524 bits (1350), Expect = 1.830e-187
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0

Query:    1 MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY 281
            MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY
Sbjct:    1 MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY 281

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2SS45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS45_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.010e-45
Identity = 89/193 (46.11%), Postives = 118/193 (61.14%), Query Frame = 0

Query:   76 DESDHGSDFDANAADVDAEMV--GEDGEDLVDYGT-GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSV 265
            D+  HG + D  A D DA +   G   ED V+    G W E +V  DR QK+ K G IMSYRTLV VGN +G GGFG+GK  +  +SV R  R A+++L+ V+RYK + L++ + G HNN KV +    PG G + G   + IL+  GIAD TAKAYG+R P SVV+A F AL  H+ L  ++  RG RIL +
Sbjct:  181 DDGGHGHEIDLEATDADAFLRRRGMQAEDEVEPELPGRWAETIVRADRVQKVIKGGMIMSYRTLVVVGNGHGVGGFGVGKAQDAAESVARGIRQAKKNLVVVDRYKNTALVHTVEGRHNNCKVVLRAVPPGYGFKGGRTAQAILQQMGIADCTAKAYGRRTPASVVQAIFKALARHKSLDQISRSRGRRILEM 373

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S1YM29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM29_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.100e-38
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 0

Query:   96 VGEDGE--DLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHK 267
            +G+DG   D      GDW +  V  DR QK+ + G  + YR L   GNANG GGFG GK   PQ++V +A R+A+R++ + E +  +GL   L G HN+ KV +     G GL+   +IE IL+ FGI+DAT K++G R+ ++VVRATF ALL H+ L ++A++RG R++++ K
Sbjct:  191 IGDDGNPIDPNQKAFGDWGDMTVRVDRVQKVRRGGTTVRYRALAVGGNANGCGGFGTGKAHSPQEAVTKACREAKRNIHFFEPHLGTGLTTDLVGTHNSCKVILLSVPKGYGLKGHPLIEDILKYFGISDATGKSFGNRNQFNVVRATFKALLTHQTLEEIALKRGKRLINIQK 364

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 149 bits (375), Expect = 1.440e-38
Identity = 72/161 (44.72%), Postives = 107/161 (66.46%), Query Frame = 0

Query:  109 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTL 269
            G+W E LV  DRT K+ + G++ SYR LV  GN NG GGFG+GK  +P  +V  A R  +R++ +V+RY+ +GL   L G+ N+ KVY+  T    GLR   +I  IL+ FGI +  AK++G R+PY+V RATF AL+ HE + D+A++RG R++S+ + +
Sbjct:  238 GEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRST--DDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2M397_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M397_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.260e-38
Identity = 79/204 (38.73%), Postives = 125/204 (61.27%), Query Frame = 0

Query:   65 RAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 268
            R   Y +L  E +++H  D +    ++  EM+ ++GED      G W E  +  DR QK+ + G  + YR LV  GN NG  GFG+GK   P +++V+A +  +R++ YV+RY  +GL Y L G+HN+ KV +   RP  GL    +I  IL+  GI DAT+K++G R+PY+VV ATF AL+ HE L ++A++RG +++++ + 
Sbjct:  381 RTKYYNIL--ERDNEHEKDREEKEDEI-LEMI-KNGEDPNQEAFGPWAECTIKVDRVQKVERGGTTVRYRALVIGGNGNGAAGFGIGKALSPNEAIVKACKHCKRNVFYVDRYLNTGLSYDLAGKHNSCKVVLRAVRPDYGLHGHPLICEILKHAGITDATSKSHGNRNPYNVVYATFKALMTHESLEEIALKRGKKLMNLQRA 580

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S1U8N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.190e-37
Identity = 71/159 (44.65%), Postives = 101/159 (63.52%), Query Frame = 0

Query:  109 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHK 267
            G W+E+L+M D+ QK+   G +  +R L  VGN NG  GFG+GK  + Q +  ++FR+A++++I V+RY    L + LYG+HN  +V+IY     + LRAG I   I+E  GI DAT +  G  +PYSVVRATFNAL  H  +   A  RG RILS+++
Sbjct:   52 GPWMENLIMVDQVQKVVPGGTVPRFRALTVVGNINGAVGFGVGKAEDIQDATEKSFRNAKKNIIIVDRYFGRALYHDLYGKHNGCRVWIYARPVNTELRAGRITAAIMEAAGIMDATVRIDGPMNPYSVVRATFNALSKHRSIVHHARVRGRRILSLYR 210

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S4IDP2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IDP2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.880e-36
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 0

Query:  109 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 268
            G W E ++  DR QK+ + G ++ YR LV  GNANG  GFG+GK   P ++   A +  R ++ +V+RY  SGL Y L G++N+ KV +   RP  GL   D++  IL+ FGI D + K +G R+ ++VVRATF ALL HE + ++A++RG R+L++ + 
Sbjct:  283 GPWSETIIRVDRVQKVQRGGTMVRYRALVVGGNANGCAGFGVGKAKSPNEATAAAVKMCRTNIFFVDRYMGSGLSYSLVGKNNSCKVLLRTVRPNFGLCGHDLVCLILKYFGITDCSNKTHGNRNQFNVVRATFKALLTHESMEEIALKRGKRLLNIERA 442

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S3PAC5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAC5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.000e-35
Identity = 74/192 (38.54%), Postives = 119/192 (61.98%), Query Frame = 0

Query:   94 EMVGEDGEDLV----------------DYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTL 269
            +++GEDGED                      G+W E L+  DR+ K+ + G++ SYR L+  GN NG GGFG+GK ++P ++V  A R A+R++ +V+RY+ +GL   L G+ N+ KV I  T   +GLR  ++   IL  FGI +A  KA+G RHP++VVRATF AL+ H+ + +++++RG R++S+ + +
Sbjct:  200 QLLGEDGEDXXXXXXXXXXRENRIDPNQLAHGEWSELLIGVDRSIKLWRGGRLESYRALMIGGNCNGCGGFGIGKSSDPIKAVDLAGRKAKRNIFFVDRYQNNGLTSHLSGKMNSTKVIIRAT--DNGLRGNELCMEILMRFGITNAVCKAHGNRHPWNVVRATFKALMTHQSIEEISLKRGKRLVSLDRAM 389

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2UAP2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAP2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.010e-35
Identity = 64/160 (40.00%), Postives = 103/160 (64.38%), Query Frame = 0

Query:  109 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 268
            GDW E +V  DR QK+ + G ++ YR LV  GN +G  GFG+ K   PQ +   A R  +R++ +++RY+ SGL   L G HN+ +V +   +P  GL+   ++E IL+ FGI+D +AK +G R+ Y+VVRATF A++ HE + ++A++RG R++ + + 
Sbjct:  233 GDWSETVVRVDRVQKVQRGGTMVRYRALVVGGNCHGCAGFGIAKRDNPQDATEAAARLCKRNIFFIDRYRNSGLTSDLAGRHNSCRVILRHVQPHMGLKGHPLVEDILKYFGISDCSAKTHGNRNIYNVVRATFKAIMTHESMEEIALKRGKRLMPMDRA 392

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BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7R9WRG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRG6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.170e-34
Identity = 71/160 (44.38%), Postives = 103/160 (64.38%), Query Frame = 0

Query:  109 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 268
            GDW E +V  DR +K+ + G+I S+R LV  GN  G GGFG+GK  EP+ +V  A R ARR++ +V+RY+  G+   L G  NN +V +  T   +GLR   +   IL+  GI +  AKA+G R+ Y+VVRATF AL+ HE L D++M+RG R++++ K 
Sbjct:  218 GDWGEMVVRTDRVRKMWRGGRIESFRALVIGGNLTGCGGFGVGKSFEPEDAVELACRMARRNIFFVDRYRNRGITRDLVGRQNNCRVQLRST--DNGLRGNPLCCEILKLMGITNVVAKAHGPRNHYNVVRATFKALMTHESLEDISMKRGVRLVNLQKA 375

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|14202 vs. uniprot

BLAST of jgi.p|Trimin1|14202 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZCM9_9STRA	1.830e-187	100.00	Ribosomal protein S5, C-terminal domain-containing...	[more]
A0A7S2SS45_9STRA	9.010e-45	46.11	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S1YM29_9STRA	1.100e-38	43.10	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A1Z5K7E2_FISSO	1.440e-38	44.72	Small subunit ribosomal protein S5 n=2 Tax=Fistuli...	[more]
A0A7S2M397_9STRA	4.260e-38	38.73	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S1U8N8_9STRA	1.190e-37	44.65	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S4IDP2_9STRA	6.880e-36	41.88	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S3PAC5_9STRA	2.000e-35	38.54	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S2UAP2_9STRA	3.010e-35	40.00	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7R9WRG6_9STRA	1.170e-34	44.38	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 178..267 e-value: 2.8E-17 score: 64.1
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 188..258 e-value: 9.7E-17 score: 60.2
None	No IPR available	GENE3D	3.30.160.20		coord: 104..172 e-value: 5.6E-16 score: 60.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..89
None	No IPR available	PANTHER	PTHR13718:SF61	28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL	coord: 76..263
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 111..177
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 113..175 e-value: 2.6E-18 score: 65.8
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 111..174 score: 16.168129
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 76..263
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 183..259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_126	contig	Contig_126:127649..131132 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|14202	mRNA_13550	Tribonema minus UTEX_B_3156	mRNA	Contig_126 127551..131366 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|14202|CE14201_83 ID=Trimin1|14202|CE14201_83|Name=jgi.p|Trimin1|14202|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPPPP
NQVAKEQRRAAAAARAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDG
EDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGM
GKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPT
RPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEG
LHDVAMRRGARILSVHKTLLGRHHRDDPRYY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR005324	Ribosomal_S5_C
IPR013810	Ribosomal_S5_N
IPR000851	Ribosomal_S5
IPR020568	Ribosomal_S5_D2-typ_fold