Trimin1|136990|gw1.198.18.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|136990
Unique NameTrimin1|136990|gw1.198.18.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length265
Homology
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BLAST of jgi.p|Trimin1|136990 vs. uniprot
Match: A0A835Z2X7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.790e-5
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 
Query:    1 CRELESVPKSIGQLTGLTYLVFSRC 25
            CRELESVPKSIGQLTGLTYLVFSRC
Sbjct:    1 CRELESVPKSIGQLTGLTYLVFSRC 25
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136990 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z2X7_9STRA3.790e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..167
e-value: 6.7E-39
score: 135.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 172..265
e-value: 1.6E-22
score: 81.4
IPR026906BspA type Leucine rich repeat regionPFAMPF13306LRR_5coord: 115..199
e-value: 0.15
score: 12.0
coord: 17..101
e-value: 0.073
score: 13.0
NoneNo IPR availablePANTHERPTHR16083:SF25SUBFAMILY NOT NAMEDcoord: 104..213
NoneNo IPR availablePANTHERPTHR16083:SF25SUBFAMILY NOT NAMEDcoord: 151..265
coord: 1..146
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1..146
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 151..265
coord: 104..213
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 4..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_198contigContig_198:164178..164972 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136990mRNA_16040Tribonema minus UTEX_B_3156 mRNAContig_198 164178..164972 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|136990|gw1.198.18.1 ID=Trimin1|136990|gw1.198.18.1|Name=jgi.p|Trimin1|136990|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
CRELESVPKSIGQLTGLTYLVFSRCKALQSVPESIGQLTGLTSLSFYKCK
ALQSVPESIGLLTGLTALDFTECEALQSVPESIGQLTGLRSLDFTRCYEL
QGVPESIGQLTGLTSLDFTGCFELQGVPESIGQLTSLTNLNFDGCSALRS
VPESIGQLAGLTRLSFERCNTLKRVPESIGLLTGLTRLSFERCNTLKRVP
ESIGLLTGLTRLDFYGCSALTRVPESIGQLAGLTSLNFFRCEALQSVPES
IGQLTGVTFLDLRGC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR026906LRR_5