Trimin1|136713|gw1.20.92.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|136713
Unique NameTrimin1|136713|gw1.20.92.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length135
Homology
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A836CI30_9STRA (XPG N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI30_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.360e-76
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 135
            MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK
Sbjct:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKRIXXXXXXXXXXXXAAATSK 135          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.110e-45
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMR-QDAEVNVTKQAQRILTAQLKR 116
            MG+ NLW+LLSP GR +SIETL  KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R +  + +V K AQRIL +QLK+
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRLEGTDCSVRKTAQRILASQLKK 117          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.130e-45
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDA-EVNVTKQAQRILTAQLKR 116
            MG+ NLW+LLSP GR +SIETL  KTLAVDVSIWL +FIK MR DDG V+KNAHIIGTLRRV+KLL+HRIRPVFVFDGGAP+LK +TL ARR++R +  + +V K AQRIL +QLK+
Sbjct:    1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLRRVVKLLFHRIRPVFVFDGGAPALKARTLAARRKLRSEGTDSSVRKTAQRILASQLKK 117          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.320e-44
Identity = 75/116 (64.66%), Postives = 99/116 (85.34%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 116
            MGV+NLW+LL P GRR+++E+LERKTLA+DVSIWL +FIK MR D+G V+KNAHIIGT RR++KLL++RIRP+FVFDGG P +K +T+ +R+R R+D E +V K AQR+L AQLK+
Sbjct:    1 MGVHNLWQLLLPVGRRVNVESLERKTLAIDVSIWLTQFIKAMRDDEGKVVKNAHIIGTFRRIVKLLFYRIRPIFVFDGGTPEIKRRTVMSRKRRREDQETSVRKTAQRLLLAQLKK 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.030e-43
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 116
            MGV+ LW+LL P GRR SIE+L  KTLA+D+SIWL +F+K MR DDG ++KNAH++GTLRR+ KLL+HRIRPV VFDG AP+LK +TL  RR MR+  E +VTK AQR+L AQL++
Sbjct:    1 MGVHGLWRLLLPVGRRASIESLGGKTLAIDMSIWLTQFVKAMRDDDGRLLKNAHLLGTLRRLCKLLFHRIRPVMVFDGSAPTLKRRTLEKRRAMRERQEASVTKTAQRLLLAQLRK 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: UPI0010366706 (DNA repair protein UVH3-like isoform X2 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010366706)

HSP 1 Score: 137 bits (345), Expect = 1.100e-38
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 115
            MGV+ LW+LL+P GRR+S+ETL  K LA+D SIW+++F+K MR D G ++KNAHI+G  RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+  + K A+++L   L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: D8QQY4_SELML (XPGN domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QQY4_SELML)

HSP 1 Score: 134 bits (337), Expect = 3.580e-38
Identity = 60/110 (54.55%), Postives = 85/110 (77.27%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRIL 110
            MGV+ LW+LL+P GRR+S+E L  K LA+D SIW+++F+K MR D G VM+NAH++G  RR+ KLL+ R++PVFVFDGG P LK +T+ ARRR R+ A+  + K A+++L
Sbjct:    1 MGVHGLWELLAPVGRRVSVELLGNKKLAIDASIWIIQFLKAMRDDRGEVMRNAHLLGFFRRICKLLFLRVKPVFVFDGGTPFLKRRTVIARRRQREQAQSKIRKTAEKLL 110          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A482SEU7_9ARCH (XPGN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEU7_9ARCH)

HSP 1 Score: 133 bits (335), Expect = 4.720e-38
Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARR 92
            MGV +LW+LL+P GRR+SIETLE K LA+D+SIWL +FIK MR ++G ++KNAHIIGTLRR++KLL+H I+PVFVFDG  P LKE+ + +RR
Sbjct:    1 MGVKDLWQLLAPMGRRVSIETLEGKALAIDMSIWLTQFIKAMRDEEGNMIKNAHIIGTLRRILKLLFHGIKPVFVFDGRTPQLKERVIESRR 92          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A5A8EMW8_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EMW8_CAFRO)

HSP 1 Score: 146 bits (368), Expect = 5.160e-38
Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLKR 116
            MGV NLWKLL P GRR++IETL  + LAVDVSIWL +F+K MR D+G ++KNAH++GT RR+ KL++HRIRPVFVFDGG P+LK +T+  RR+ RQD+     + AQR+L   +++
Sbjct:    1 MGVLNLWKLLQPCGRRVAIETLRGEVLAVDVSIWLTQFVKAMRDDEGMMLKNAHVVGTFRRICKLMFHRIRPVFVFDGGTPALKRKTVLLRRQRRQDSAQATERAAQRLLLNHIRQ 116          
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Match: A0A4S4CV51_CAMSI (XPGN domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CV51_CAMSI)

HSP 1 Score: 137 bits (345), Expect = 5.690e-38
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 0
Query:    1 MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVMKNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEVNVTKQAQRILTAQLK 115
            MGV+ LW+LL+P GRR+S+ETL  K LA+D SIW+++F+K MR D G ++KNAHI+G  RR+ KLL+ R +PVFVFDGG P+LK +T+ ARRR R++A+  + K A+++L   L+
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLR 115          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136713 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI30_9STRA1.360e-76100.00XPG N-terminal domain-containing protein (Fragment... [more]
A0A6H5KXJ8_9PHAE7.110e-4570.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY4_ECTSI7.130e-4570.94DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
W7TX36_9STRA1.320e-4464.66Dna repair enzyme n=2 Tax=Nannochloropsis gaditana... [more]
A0A7R9YE64_9STRA3.030e-4363.79Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI00103667061.100e-3853.91DNA repair protein UVH3-like isoform X2 n=1 Tax=Ca... [more]
D8QQY4_SELML3.580e-3854.55XPGN domain-containing protein n=1 Tax=Selaginella... [more]
A0A482SEU7_9ARCH4.720e-3865.22XPGN domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A5A8EMW8_CAFRO5.160e-3857.76Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A4S4CV51_CAMSI5.690e-3853.91XPGN domain-containing protein n=2 Tax=Camellia si... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001044XPG/Rad2 endonuclease, eukaryotesPRINTSPR00066XRODRMPGMNTGcoord: 96..118
score: 30.43
coord: 2..19
score: 55.56
coord: 54..77
score: 54.17
IPR006084XPG/Rad2 endonucleasePRINTSPR00853XPGRADSUPERcoord: 24..38
score: 42.71
coord: 72..91
score: 51.56
IPR006085XPG, N-terminalSMARTSM00485xpgn3coord: 1..98
e-value: 2.1E-38
score: 143.6
IPR006085XPG, N-terminalPFAMPF00752XPG_Ncoord: 1..97
e-value: 1.1E-28
score: 99.6
NoneNo IPR availableGENE3D3.40.50.1010coord: 1..134
e-value: 9.7E-34
score: 118.6
NoneNo IPR availablePANTHERPTHR16171DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATEDcoord: 1..129
NoneNo IPR availablePANTHERPTHR16171:SF7DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLScoord: 1..129
NoneNo IPR availableCDDcd09868PIN_XPG_RAD2coord: 2..112
e-value: 6.85453E-52
score: 161.531
IPR019974XPG conserved sitePROSITEPS00841XPG_1coord: 70..84
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 2..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:105960..106364 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136713mRNA_4048Tribonema minus UTEX_B_3156 mRNAContig_20 105960..106364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|136713|gw1.20.92.1 ID=Trimin1|136713|gw1.20.92.1|Name=jgi.p|Trimin1|136713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MGVNNLWKLLSPAGRRISIETLERKTLAVDVSIWLVKFIKTMRQDDGAVM
KNAHIIGTLRRVIKLLYHRIRPVFVFDGGAPSLKEQTLRARRRMRQDAEV
NVTKQAQRILTAQLKRIATANAKANAAAAAAATSK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001044XPG/Rad2_eukaryotes
IPR006084XPG/Rad2
IPR006085XPG_DNA_repair_N
IPR019974XPG_CS
IPR029060PIN-like_dom_sf