Trimin1|136613|gw1.161.17.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|136613
Unique NameTrimin1|136613|gw1.161.17.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length93
Homology
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.960e-29
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK 93
            SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK
Sbjct:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLELVMRK 93
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.260e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 48
            GL+ AV ELLANYEA+S+ER+P+YCRVCKFQG S+E L  H++  LH
Sbjct:  178 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLH 224
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.300e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 48
            GL+ AV ELLANYEA+S+ER+P+YCRVCKFQG S+E L  H++  LH
Sbjct:  180 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLH 226
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 1.530e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 48
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:    1 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 48
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.810e-11
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 48
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:   32 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 79
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BLAST of jgi.p|Trimin1|136613 vs. uniprot
Match: A0A4D9D0V7_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.290e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:    1 SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLH 48
            +GL   V ELL+NY+  S+ER P+YCR+C+FQG S+EDLA H++ +LH
Sbjct:  167 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELH 214
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136613 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z659_9STRA1.960e-29100.00C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KMP8_9PHAE8.260e-1365.96C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI8.300e-1365.96C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
I2CRP9_NANGC1.530e-1156.25C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
W7TIZ9_9STRA4.810e-1156.25C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
A0A4D9D0V7_9STRA3.290e-1056.25C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 24..48
e-value: 6.4
score: 15.0
coord: 59..83
e-value: 0.29
score: 20.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 61..83
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 56..90
e-value: 1.0E-4
score: 31.7
NoneNo IPR availablePFAMPF12874zf-metcoord: 60..83
e-value: 1.7E-7
score: 31.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 43..89
e-value: 1.4E-10
score: 42.6
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 56..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:248992..249270 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136613mRNA_13138Tribonema minus UTEX_B_3156 mRNAContig_161 248992..249270 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|136613|gw1.161.17.1 ID=Trimin1|136613|gw1.161.17.1|Name=jgi.p|Trimin1|136613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
SGLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTE
ASTRERRVSFCKLCRKQFTSPPQLREHVQGRAHKERLELVMRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR036236Znf_C2H2_sf