Trimin1|135764|gw1.167.28.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|135764
Unique NameTrimin1|135764|gw1.167.28.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length161
Homology
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.510e-73
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD
Sbjct:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.080e-39
Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTG-EQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHA 155
            IKP ++SW  LLDAIG+AGQ A+MMAWYG+M  +G      XXXXXXXXXXXXX                            I CYA AK P KAE+VLAEMVQSATIKPNAITF S+MKAY+  +RLD+AE VI RMRAAGV+P L  W  IIHA
Sbjct:    3 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.230e-37
Identity = 78/161 (48.45%), Postives = 80/161 (49.69%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IKP  QSWNVLL+AIGRAGQ  EMMAWYG+MCQTGEQP V                                         I CYA AK P KAEEVLAEMVQSATIKPN                        SRMRAAGV P    WKSIIHAAD L D
Sbjct:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRD 161          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.270e-35
Identity = 90/162 (55.56%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IKP   SW  LLDAIG+AGQ AEMMAWYG+M  +G     XXXXXXXXXXXXXXX                           I+CYATA  P +AE VLAEM QSA +KPNA  F S+M+AYI  +RLD+AE +I RMRAAGV+P    W+ IIHAAD LGD
Sbjct:  121 IKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGD 282          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CLV8_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.080e-33
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 0
Query:   84 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            CYATAK P KAEEVLAEMVQSATIKP AITFTS+MKAYI+++RLDDAE VISRMRAAGVQP++  WKSIIHAAD LGD
Sbjct:  203 CYATAKQPDKAEEVLAEMVQSATIKPEAITFTSLMKAYIEMERLDDAERVISRMRAAGVQPTIETWKSIIHAADTLGD 280          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.890e-33
Identity = 74/161 (45.96%), Postives = 88/161 (54.66%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IKP+  +W  LL+ IG AG   +M+A Y +MC  G +P V                                         INCYAT KDP KAEEVLAEM+QSA I  +AI+F S+MKAY    RL++AE VI RMRAAGVQP+   WK IIHAADAL D
Sbjct:   47 IKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAGAGEVDIFNDLWREMHYRQLVPDVKSYNTR-INCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDD 206          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.350e-31
Identity = 79/188 (42.02%), Postives = 94/188 (50.00%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFT--------------------------SVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            I+P +QSW  LL AIGRAGQ AEMMA Y +MC TG  QP++                                         I CYATAK P K E VLAE ++SA +KP+AI FT                          S+M+AYI  +RLD+AE VI RMRAAGV+P L  W+SIIHA D LGD
Sbjct:  121 IRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHAGDELGD 308          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.550e-31
Identity = 77/175 (44.00%), Postives = 93/175 (53.14%), Query Frame = 0
Query:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGE-QPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTS-------------VMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IK  V+SWNVLL+AIGRAGQ  EMMAWY +M ++G  QPD                                          I CYATA+ P KAE+V+AEM QSA +KP+AI  TS             +M+AYI  +RLDDA+ VI RMRAAG  P    W +II AADA+GD
Sbjct:  228 IKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGD 402          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CIT2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.250e-29
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 0
Query:   84 CYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            CYA AKDP KAE+VLA+M++SA ++PNAITF SVMKAYI+VQRLDDAE VISRMRA GVQP L  W SIIHAA ALGD
Sbjct:  204 CYAMAKDPGKAEKVLADMIKSAAVEPNAITFNSVMKAYIEVQRLDDAEDVISRMRATGVQPDLEIWTSIIHAAGALGD 281          
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.530e-29
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 0
Query:   82 INCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
            IN YAT K+P KAE V AEM Q+A +KPNA TFTS+MKAYI+VQRLD AE VISRMR+AGVQPSLP WKSIIHAAD  GD
Sbjct:  589 INFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGD 668          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135764 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ97_9STRA2.510e-73100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6J3_9STRA7.080e-3957.69Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z497_9STRA6.230e-3748.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA3.270e-3555.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLV8_9STRA2.080e-3383.33PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA6.890e-3345.96PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA2.350e-3142.02PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA3.550e-3144.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CIT2_9STRA1.250e-2976.92PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK07_9STRA1.530e-2976.25PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..70
e-value: 6.7E-14
score: 53.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 71..161
e-value: 6.0E-18
score: 67.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 62..121
e-value: 9.9E-13
score: 48.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 3..48
e-value: 1.3E-8
score: 34.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 7..40
e-value: 5.9E-5
score: 21.0
coord: 112..145
e-value: 5.7E-7
score: 27.3
coord: 76..110
e-value: 5.3E-8
score: 30.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 8.79102
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..144
score: 11.564229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 9.481582
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..108
score: 10.095415
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 2..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:292561..294240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135764mRNA_16964Tribonema minus UTEX_B_3156 mRNAContig_167 292561..294240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|135764|gw1.167.28.1 ID=Trimin1|135764|gw1.167.28.1|Name=jgi.p|Trimin1|135764|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVYTMTILLDHV
GAAGELSVAEGIWRAMRNRQLEPDVYCYNALINCYATAKDPRKAEEVLAE
MVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWK
SIIHAADALGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat