Trimin1|135366|gw1.46.35.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|135366
Unique NameTrimin1|135366|gw1.46.35.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length58
Homology
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.010e-36
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.630e-29
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAHF+CP  LDW VNP +TPSGITYSRGELELWV ENGTDPIARSRL LSEV+PN+AI
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAI 58          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.410e-28
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAHF+CPISLDW VNPV TPSGIT  RGELELWVSENGTDPIARSRL  SEV+PN+A+
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAV 78          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.040e-28
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAHF+CPI LDW VNPV+TPSG TYS+ ELELWV ENGTDPIARSRL +SEV+PN+AI
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI 58          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.410e-27
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAH +CPISLDW VNPV+TPSGITYSR EL+LWV ENGTDP+ARSRL +SEV+ N+AI
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAI 58          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.460e-26
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            PAHF+ PISL W VNPVVTPSGITYSR ELELWV ENGTDPIAR RL +SEV PN+AI
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI 58          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.000e-23
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRL 47
            PAHF+CPISLDW VNPV+TPSGITYSR ELELWV ENGTDPIARS L
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-10
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPN 55
            P+ ++CPISL+W  +PVVTPSG++Y R  LE W+  +  DP+ R  LT+ +V  N
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYAN 149          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A7S3J6A7_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J6A7_9SPIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.640e-10
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    4 FVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
            + CPI  D  V+PV+TPSG+TY R  +E  +  N  DP+++ RLT++++ PN+AI
Sbjct:   43 YTCPIKYDKIVDPVITPSGVTYERVMIERSIKVNRVDPVSKDRLTIAKIKPNLAI 97          
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A024GKL0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKL0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.800e-9
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENG-TDPIARSRLTLSEVVPN 55
            P H  CPISL+   +PV+TPSGI+Y R ++EL +++NG  +PI R +LT   + PN
Sbjct:  196 PDHLTCPISLEIMQDPVITPSGISYERSQIELHINKNGPVEPITRQKLTTDMLRPN 251          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBI8_9STRA8.010e-36100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CKT5_9STRA9.630e-2982.76U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C868_9STRA2.410e-2882.76U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YZZ2_9STRA6.040e-2879.31U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A835YWC4_9STRA3.410e-2777.59U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA7.460e-2681.03U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA8.000e-2387.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A2N1MYB8_9GLOM1.320e-1047.27RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S3J6A7_9SPIT1.640e-1045.45Hypothetical protein n=2 Tax=Euplotes harpa TaxID=... [more]
A0A024GKL0_9STRA5.800e-948.21RING-type E3 ubiquitin transferase n=1 Tax=Albugo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U-box domainSMARTSM00504Ubox_2coord: 3..58
e-value: 8.5E-7
score: 38.6
IPR003613U-box domainPFAMPF04564U-boxcoord: 1..58
e-value: 2.9E-12
score: 46.6
IPR003613U-box domainPROSITEPS51698U_BOXcoord: 1..58
score: 18.374285
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..58
e-value: 1.1E-15
score: 59.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:372340..372513 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135366mRNA_4604Tribonema minus UTEX_B_3156 mRNAContig_46 372340..372513 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|135366|gw1.46.35.1 ID=Trimin1|135366|gw1.46.35.1|Name=jgi.p|Trimin1|135366|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=58bp
PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLS
EVVPNIAI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD