mRNA_4604 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135366
Unique NamemRNA_4604
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836CBI8_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.010e-36
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI
Sbjct:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 58
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836CKT5_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.630e-29
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAHF+CP  LDW VNP +TPSGITYSRGELELWV ENGTDPIARSRL LSEV+PN+AI
Sbjct:    1 PAHFLCPTFLDWLVNPAITPSGITYSRGELELWVRENGTDPIARSRLGLSEVIPNLAI 58
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A836C868_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C868_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.410e-28
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAHF+CPISLDW VNPV TPSGIT  RGELELWVSENGTDPIARSRL  SEV+PN+A+
Sbjct:   21 PAHFLCPISLDWLVNPVTTPSGITSPRGELELWVSENGTDPIARSRLATSEVIPNLAV 78
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835YZZ2_9STRA (U-box domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.040e-28
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAHF+CPI LDW VNPV+TPSG TYS+ ELELWV ENGTDPIARSRL +SEV+PN+AI
Sbjct:    1 PAHFLCPIFLDWLVNPVITPSGTTYSQAELELWVRENGTDPIARSRLAMSEVIPNLAI 58
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835YWC4_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.410e-27
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAH +CPISLDW VNPV+TPSGITYSR EL+LWV ENGTDP+ARSRL +SEV+ N+AI
Sbjct:    1 PAHLLCPISLDWLVNPVITPSGITYSREELDLWVRENGTDPVARSRLAMSEVISNLAI 58
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835Z5B2_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.460e-26
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            PAHF+ PISL W VNPVVTPSGITYSR ELELWV ENGTDPIAR RL +SEV PN+AI
Sbjct:    1 PAHFLRPISLAWLVNPVVTPSGITYSREELELWVRENGTDPIARGRLAMSEVFPNLAI 58
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A835Z2F1_9STRA (U-box domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.000e-23
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRL 141
            PAHF+CPISLDW VNPV+TPSGITYSR ELELWV ENGTDPIARS L
Sbjct:    1 PAHFLCPISLDWLVNPVITPSGITYSRAELELWVRENGTDPIARSCL 47
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A2N1MYB8_9GLOM (RING-type E3 ubiquitin transferase n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MYB8_9GLOM)

HSP 1 Score: 62.4 bits (150), Expect = 1.320e-10
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPN 165
            P+ ++CPISL+W  +PVVTPSG++Y R  LE W+  +  DP+ R  LT+ +V  N
Sbjct:   95 PSQYMCPISLNWMEDPVVTPSGVSYDRALLEEWLRNDPHDPLTREVLTIDQVYAN 149
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A7S3J6A7_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J6A7_9SPIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.640e-10
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   10 FVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLSEVVPNIAI 174
            + CPI  D  V+PV+TPSG+TY R  +E  +  N  DP+++ RLT++++ PN+AI
Sbjct:   43 YTCPIKYDKIVDPVITPSGVTYERVMIERSIKVNRVDPVSKDRLTIAKIKPNLAI 97
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BLAST of jgi.p|Trimin1|135366 vs. uniprot
Match: A0A024GKL0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKL0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.800e-9
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENG-TDPIARSRLTLSEVVPN 165
            P H  CPISL+   +PV+TPSGI+Y R ++EL +++NG  +PI R +LT   + PN
Sbjct:  196 PDHLTCPISLEIMQDPVITPSGISYERSQIELHINKNGPVEPITRQKLTTDMLRPN 251
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135366 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBI8_9STRA8.010e-36100.00U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CKT5_9STRA9.630e-2982.76U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C868_9STRA2.410e-2882.76U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YZZ2_9STRA6.040e-2879.31U-box domain-containing protein (Fragment) n=2 Tax... [more]
A0A835YWC4_9STRA3.410e-2777.59U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5B2_9STRA7.460e-2681.03U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z2F1_9STRA8.000e-2387.23U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A2N1MYB8_9GLOM1.320e-1047.27RING-type E3 ubiquitin transferase n=2 Tax=Rhizoph... [more]
A0A7S3J6A7_9SPIT1.640e-1045.45Hypothetical protein n=2 Tax=Euplotes harpa TaxID=... [more]
A0A024GKL0_9STRA5.800e-948.21RING-type E3 ubiquitin transferase n=1 Tax=Albugo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:372340..372513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135366|gw1.46.35.1
GOsGO:0008150,GO:0010033,GO:0010200,GO:0010243,GO:0042221,GO:0042493,GO:0050896,GO:1901698,GO:1901700
DescriptionRING-type E3 ubiquitin transferase
COG categoryH
Max annot lvl35493|Streptophyta
EggNOG OGs28JP5@1|root,2QS2D@2759|Eukaryota,37P0A@33090|Viridiplantae,3G7GF@35493|Streptophyta,4JM8T@91835|fabids
Evalue1.75e-09
Seed ortholog3827.XP_004503116.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId135688
TrackFilteredModels1
ProteinId135366
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135366gene_4604Tribonema minus UTEX_B_3156 geneContig_46 372340..372513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4604_1exon_4604_1Tribonema minus UTEX_B_3156 exonContig_46 372340..372513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4604CDS_4604Tribonema minus UTEX_B_3156 CDSContig_46 372340..372513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135366Trimin1|135366|gw1.46.35.1Tribonema minus UTEX_B_3156 polypeptideContig_46 372340..372513 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Trimin1|135366|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_46:372340..372513+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCGCATTTTGTATGTCCAATTTCCCTCGATTGGCATGTGAACCCTGT
AGTCACCCCAAGTGGCATCACGTACTCAAGGGGGGAACTTGAGCTGTGGG
TGAGCGAGAATGGCACGGATCCTATCGCTCGCAGCCGTCTTACTTTGAGC
GAGGTGGTGCCCAACATCGCCATT
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protein sequence of jgi.p|Trimin1|135366

>Trimin1|135366|gw1.46.35.1 ID=Trimin1|135366|gw1.46.35.1|Name=jgi.p|Trimin1|135366|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=58bp
PAHFVCPISLDWHVNPVVTPSGITYSRGELELWVSENGTDPIARSRLTLS
EVVPNIAI
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mRNA from alignment at Contig_46:372340..372513+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Trimin1|135366|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=174bp|location=Sequence derived from alignment at Contig_46:372340..372513+ (Tribonema minus UTEX_B_3156 )
CCGGCGCATTTTGTATGTCCAATTTCCCTCGATTGGCATGTGAACCCTGT
AGTCACCCCAAGTGGCATCACGTACTCAAGGGGGGAACTTGAGCTGTGGG
TGAGCGAGAATGGCACGGATCCTATCGCTCGCAGCCGTCTTACTTTGAGC
GAGGTGGTGCCCAACATCGCCATT
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Coding sequence (CDS) from alignment at Contig_46:372340..372513+

>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Trimin1|135366|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=174bp|location=Sequence derived from alignment at Contig_46:372340..372513+ (Tribonema minus UTEX_B_3156 )
CCGGCGCATTTTGTATGTCCAATTTCCCTCGATTGGCATGTGAACCCTGT
AGTCACCCCAAGTGGCATCACGTACTCAAGGGGGGAACTTGAGCTGTGGG
TGAGCGAGAATGGCACGGATCCTATCGCTCGCAGCCGTCTTACTTTGAGC
GAGGTGGTGCCCAACATCGCCATT
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