Trimin1|133968|gw1.77.28.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|133968
Unique Name	Trimin1\|133968\|gw1.77.28.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	100

Homology

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835YJT3_9STRA (PAS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.910e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV
Sbjct:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835Z1S8_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.770e-39
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            LTD  RP  P+ Y SAGFLA TGH +  +LG  L  L GP+TD  +L IL+ NLAAGRETSLCLLCYRAD TPFWGQLYVSAL DRAG VTAHVACLSEV
Sbjct:  113 LTDPTRPNNPIVYASAGFLAHTGHASGAVLGKSLDLLTGPATDGNSLDILNTNLAAGRETSLCLLCYRADATPFWGQLYVSALCDRAGNVTAHVACLSEV 212

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A7S2AXW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXW4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.590e-27
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            ++D + P  P+ YVS GFL LTG+  D +LG   R L GP TD  A+ ++   +AAGR+TS+CLL Y+ADGTPFW Q +V+ALRD +GA+  HV    E+
Sbjct:   70 VSDPSLPDNPIVYVSQGFLKLTGYELDYVLGRNCRFLQGPGTDPRAVEVIRQGVAAGRDTSICLLNYKADGTPFWNQFFVAALRDESGAIVNHVGVQCEI 169

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126WZ47_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126WZ47_SARFS)

HSP 1 Score: 105 bits (261), Expect = 2.480e-25
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            LT+   P  P+ + S GFL LTG+ A K++G   R L GP TD + +SIL NNLA+GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:   91 LTNPNLPDCPIIFASQGFLDLTGYEASKVIGKNCRFLQGPGTDPMTVSILRNNLASGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 190

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126X4A8_9PHAE (Putative LOV domain-containing protein n=5 Tax=Sargassum TaxID=3015 RepID=A0A126X4A8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.120e-24
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            LT+   P  P+ + S GFL LTG+ A K++G   R L GP TD + +SIL NNLA+GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:  417 LTNPNLPDCPIIFASQGFLDLTGYEASKVIGKNCRFLQGPGTDPMTVSILRNNLASGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 516

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: B7FYN4_PHATC (Uncharacterized protein PAS n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN4_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 1.210e-22
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            ++D   P  P+ YVS GFL LTG+  D++LG   R L GP TD  A+ ++   +  G +TS+CLL Y+ADGTPFW Q +V++LRD    V  HV    EV
Sbjct:   13 ISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVIRKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNHVGVQCEV 112

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-22
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            ++D + P  P+ Y S GFL LTG+  DK++G   R L GP TD  A+ I+   ++ GR+TS+CLL Y+ADG+PFW   ++SALRD+ G V   V   +EV
Sbjct:  128 VSDPSLPDNPIVYASQGFLNLTGYTIDKVIGRNCRFLQGPGTDPRAVDIIRRGVSEGRDTSVCLLNYKADGSPFWNNFFISALRDQNGVVVNFVGVQAEV 227

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835Z0M1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.070e-22
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 0

Query:    7 PGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            P  P+ Y S GFL LTG+  ++++G   R L GP TD  A+ I+   +A GR+TS+CLL YRADGTPFW   +V ALRD+ G +  HV   +EV
Sbjct:  181 PDNPIVYASQGFLKLTGYSIEQVIGRNCRFLQGPGTDPRAVDIIRRGVAEGRDTSVCLLNYRADGTPFWNNFFVGALRDQQGRIVNHVGVQAEV 274

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: B8CBB7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBB7_THAPS)

HSP 1 Score: 92.0 bits (227), Expect = 4.460e-22
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            ++D + P  P+ YVS GFL LTG+  D++LG   R L GP TD  A+ ++   +  G +TS+CLL Y+ADGTPFW Q +V+ALRD    V   V    EV
Sbjct:   13 ISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVIRKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 112

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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126X144_SACJA (Putative LOV domain-containing protein n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A126X144_SACJA)

HSP 1 Score: 98.2 bits (243), Expect = 6.740e-22
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 0

Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
            LT+   P  P+ + S GFL LTG+   +++G   R L GP TD   +SI+ NNLA GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:  294 LTNPNLPDCPIIFASQGFLELTGYEGRQVIGKNCRFLQGPGTDPGTVSIIRNNLAGGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 393

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|133968 vs. uniprot

BLAST of jgi.p|Trimin1|133968 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YJT3_9STRA	3.910e-64	100.00	PAS domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A835Z1S8_9STRA	1.770e-39	72.00	PAS domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2AXW4_9STRA	8.590e-27	50.00	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A126WZ47_SARFS	2.480e-25	52.00	Putative LOV domain-containing protein n=1 Tax=Sar...	[more]
A0A126X4A8_9PHAE	3.120e-24	52.00	Putative LOV domain-containing protein n=5 Tax=Sar...	[more]
B7FYN4_PHATC	1.210e-22	46.00	Uncharacterized protein PAS n=2 Tax=Phaeodactylum ...	[more]
A0A836CJE1_9STRA	2.840e-22	46.00	Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371...	[more]
A0A835Z0M1_9STRA	3.070e-22	48.94	Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371...	[more]
B8CBB7_THAPS	4.460e-22	46.00	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
A0A126X144_SACJA	6.740e-22	49.00	Putative LOV domain-containing protein n=3 Tax=Sac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000014	PAS domain	PFAM	PF13426	PAS_9	coord: 11..97 e-value: 8.0E-9 score: 35.7
IPR000014	PAS domain	CDD	cd00130	PAS	coord: 13..100 e-value: 5.80618E-5 score: 36.8424
None	No IPR available	GENE3D	3.30.450.20	PAS domain	coord: 1..100 e-value: 4.4E-22 score: 80.4
None	No IPR available	PANTHER	PTHR47429	PROTEIN TWIN LOV 1	coord: 1..94
IPR035965	PAS domain superfamily	SUPERFAMILY	55785	PYP-like sensor domain (PAS domain)	coord: 10..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_77	contig	Contig_77:575619..575918 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|133968	mRNA_12492	Tribonema minus UTEX_B_3156	mRNA	Contig_77 575619..575918 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|133968|gw1.77.28.1 ID=Trimin1|133968|gw1.77.28.1|Name=jgi.p|Trimin1|133968|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSIL
DNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000014	PAS
IPR035965	PAS-like_dom_sf