mRNA_12492 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133968
Unique NamemRNA_12492
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835YJT3_9STRA (PAS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.910e-64
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV
Sbjct:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 100
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835Z1S8_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.770e-39
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            LTD  RP  P+ Y SAGFLA TGH +  +LG  L  L GP+TD  +L IL+ NLAAGRETSLCLLCYRAD TPFWGQLYVSAL DRAG VTAHVACLSEV
Sbjct:  113 LTDPTRPNNPIVYASAGFLAHTGHASGAVLGKSLDLLTGPATDGNSLDILNTNLAAGRETSLCLLCYRADATPFWGQLYVSALCDRAGNVTAHVACLSEV 212
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A7S2AXW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXW4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.590e-27
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            ++D + P  P+ YVS GFL LTG+  D +LG   R L GP TD  A+ ++   +AAGR+TS+CLL Y+ADGTPFW Q +V+ALRD +GA+  HV    E+
Sbjct:   70 VSDPSLPDNPIVYVSQGFLKLTGYELDYVLGRNCRFLQGPGTDPRAVEVIRQGVAAGRDTSICLLNYKADGTPFWNQFFVAALRDESGAIVNHVGVQCEI 169
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126WZ47_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126WZ47_SARFS)

HSP 1 Score: 105 bits (261), Expect = 2.480e-25
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            LT+   P  P+ + S GFL LTG+ A K++G   R L GP TD + +SIL NNLA+GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:   91 LTNPNLPDCPIIFASQGFLDLTGYEASKVIGKNCRFLQGPGTDPMTVSILRNNLASGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 190
[Close]
BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126X4A8_9PHAE (Putative LOV domain-containing protein n=5 Tax=Sargassum TaxID=3015 RepID=A0A126X4A8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.120e-24
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            LT+   P  P+ + S GFL LTG+ A K++G   R L GP TD + +SIL NNLA+GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:  417 LTNPNLPDCPIIFASQGFLDLTGYEASKVIGKNCRFLQGPGTDPMTVSILRNNLASGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 516
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: B7FYN4_PHATC (Uncharacterized protein PAS n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN4_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 1.210e-22
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            ++D   P  P+ YVS GFL LTG+  D++LG   R L GP TD  A+ ++   +  G +TS+CLL Y+ADGTPFW Q +V++LRD    V  HV    EV
Sbjct:   13 ISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVIRKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNHVGVQCEV 112
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A836CJE1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-22
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            ++D + P  P+ Y S GFL LTG+  DK++G   R L GP TD  A+ I+   ++ GR+TS+CLL Y+ADG+PFW   ++SALRD+ G V   V   +EV
Sbjct:  128 VSDPSLPDNPIVYASQGFLNLTGYTIDKVIGRNCRFLQGPGTDPRAVDIIRRGVSEGRDTSVCLLNYKADGSPFWNNFFISALRDQNGVVVNFVGVQAEV 227
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A835Z0M1_9STRA (Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.070e-22
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   19 PGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            P  P+ Y S GFL LTG+  ++++G   R L GP TD  A+ I+   +A GR+TS+CLL YRADGTPFW   +V ALRD+ G +  HV   +EV
Sbjct:  181 PDNPIVYASQGFLKLTGYSIEQVIGRNCRFLQGPGTDPRAVDIIRRGVAEGRDTSVCLLNYRADGTPFWNNFFVGALRDQQGRIVNHVGVQAEV 274
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BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: B8CBB7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBB7_THAPS)

HSP 1 Score: 92.0 bits (227), Expect = 4.460e-22
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            ++D + P  P+ YVS GFL LTG+  D++LG   R L GP TD  A+ ++   +  G +TS+CLL Y+ADGTPFW Q +V+ALRD    V   V    EV
Sbjct:   13 ISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVIRKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 112
[Close]
BLAST of jgi.p|Trimin1|133968 vs. uniprot
Match: A0A126X144_SACJA (Putative LOV domain-containing protein n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A126X144_SACJA)

HSP 1 Score: 98.2 bits (243), Expect = 6.740e-22
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSILDNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV 300
            LT+   P  P+ + S GFL LTG+   +++G   R L GP TD   +SI+ NNLA GR+TS+C+L Y+ADGTPFW QL +  L D  G V  HV  L EV
Sbjct:  294 LTNPNLPDCPIIFASQGFLELTGYEGRQVIGKNCRFLQGPGTDPGTVSIIRNNLAGGRDTSVCILNYKADGTPFWNQLSIGVLLDAHGQVANHVGVLCEV 393
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133968 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJT3_9STRA3.910e-64100.00PAS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z1S8_9STRA1.770e-3972.00PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2AXW4_9STRA8.590e-2750.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A126WZ47_SARFS2.480e-2552.00Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X4A8_9PHAE3.120e-2452.00Putative LOV domain-containing protein n=5 Tax=Sar... [more]
B7FYN4_PHATC1.210e-2246.00Uncharacterized protein PAS n=2 Tax=Phaeodactylum ... [more]
A0A836CJE1_9STRA2.840e-2246.00Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835Z0M1_9STRA3.070e-2248.94Aureochrome 4 n=1 Tax=Tribonema minus TaxID=303371... [more]
B8CBB7_THAPS4.460e-2246.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A126X144_SACJA6.740e-2249.00Putative LOV domain-containing protein n=3 Tax=Sac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:575619..575918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133968|gw1.77.28.1
BRITEko00000,ko01000,ko01001
KEGG koko:K20715
EC2.7.11.1
GOsGO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009637,GO:0009638,GO:0009657,GO:0009658,GO:0009785,GO:0009881,GO:0009882,GO:0009898,GO:0009902,GO:0009903,GO:0009904,GO:0009986,GO:0009987,GO:0010119,GO:0010155,GO:0010181,GO:0010359,GO:0010360,GO:0010361,GO:0010362,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019750,GO:0022898,GO:0023052,GO:0030522,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032553,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035556,GO:0036094,GO:0036211,GO:0038023,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043271,GO:0043412,GO:0044070,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046777,GO:0048037,GO:0048511,GO:0048519,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051644,GO:0051649,GO:0051656,GO:0051667,GO:0051716,GO:0060089,GO:0065007,GO:0065009,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0104004,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903792,GO:1903959,GO:1903960,GO:1904062
Descriptionnegative regulation of anion channel activity by blue light
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0610@1|root,2QPPH@2759|Eukaryota
Evalue1.6e-22
Seed ortholog2880.D7FRW8
Hectar predicted targeting categoryother localisation
TranscriptId134290
TrackFilteredModels1
ProteinId133968
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133968gene_12492Tribonema minus UTEX_B_3156 geneContig_77 575619..575918 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12492_1exon_12492_1Tribonema minus UTEX_B_3156 exonContig_77 575619..575918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12492CDS_12492Tribonema minus UTEX_B_3156 CDSContig_77 575619..575918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133968Trimin1|133968|gw1.77.28.1Tribonema minus UTEX_B_3156 polypeptideContig_77 575619..575918 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12492 ID=mRNA_12492|Name=jgi.p|Trimin1|133968|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_77:575619..575918+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGACGCCGCGCGGCCCGGCGCGCCGCTCGCGTACGTCTCCGCCGG
CTTCCTCGCGCTCACCGGTCACCCCGCGGACAAGCTGCTCGGCAGCGGCC
TGCGCGCGCTCGCGGGGCCGAGCACCGACGCGCTCGCGCTGAGCATCCTC
GACAACAACCTCGCCGCGGGGCGAGAGACGTCCCTGTGCCTGCTGTGCTA
CCGCGCCGACGGGACCCCCTTCTGGGGGCAGCTGTACGTGAGCGCGCTGC
GCGACCGCGCCGGCGCCGTCACGGCGCACGTCGCGTGCCTCTCGGAGGTC
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protein sequence of jgi.p|Trimin1|133968

>Trimin1|133968|gw1.77.28.1 ID=Trimin1|133968|gw1.77.28.1|Name=jgi.p|Trimin1|133968|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
LTDAARPGAPLAYVSAGFLALTGHPADKLLGSGLRALAGPSTDALALSIL
DNNLAAGRETSLCLLCYRADGTPFWGQLYVSALRDRAGAVTAHVACLSEV
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mRNA from alignment at Contig_77:575619..575918+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12492 ID=mRNA_12492|Name=jgi.p|Trimin1|133968|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_77:575619..575918+ (Tribonema minus UTEX_B_3156 )
CTGACGGACGCCGCGCGGCCCGGCGCGCCGCTCGCGTACGTCTCCGCCGG
CTTCCTCGCGCTCACCGGTCACCCCGCGGACAAGCTGCTCGGCAGCGGCC
TGCGCGCGCTCGCGGGGCCGAGCACCGACGCGCTCGCGCTGAGCATCCTC
GACAACAACCTCGCCGCGGGGCGAGAGACGTCCCTGTGCCTGCTGTGCTA
CCGCGCCGACGGGACCCCCTTCTGGGGGCAGCTGTACGTGAGCGCGCTGC
GCGACCGCGCCGGCGCCGTCACGGCGCACGTCGCGTGCCTCTCGGAGGTC
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Coding sequence (CDS) from alignment at Contig_77:575619..575918+

>mRNA_12492 ID=mRNA_12492|Name=jgi.p|Trimin1|133968|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_77:575619..575918+ (Tribonema minus UTEX_B_3156 )
CTGACGGACGCCGCGCGGCCCGGCGCGCCGCTCGCGTACGTCTCCGCCGG
CTTCCTCGCGCTCACCGGTCACCCCGCGGACAAGCTGCTCGGCAGCGGCC
TGCGCGCGCTCGCGGGGCCGAGCACCGACGCGCTCGCGCTGAGCATCCTC
GACAACAACCTCGCCGCGGGGCGAGAGACGTCCCTGTGCCTGCTGTGCTA
CCGCGCCGACGGGACCCCCTTCTGGGGGCAGCTGTACGTGAGCGCGCTGC
GCGACCGCGCCGGCGCCGTCACGGCGCACGTCGCGTGCCTCTCGGAGGTC
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