Trimin1|132601|gw1.437.3.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|132601
Unique NameTrimin1|132601|gw1.437.3.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length67
Homology
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A835YML9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.690e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 67
            LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA
Sbjct:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 67          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.780e-15
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 67
            L V R   FYGYH + +LF++V + NP   G+VAS+LQAG VL  + QPFESH+ +LLQ F+D+ ++
Sbjct:  125 LEVVRGVPFYGYHGEEKLFVKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNIS 191          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A3R7GZK3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GZK3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.870e-14
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAF 61
            + + + T FYGYHP+P+LF+++ LYNPR +  V  L+++G +  +K QP+E+H+ +LLQ F
Sbjct:   66 MLIVQGTPFYGYHPEPKLFVQIFLYNPRVMASVVQLVESGCIGERKFQPYEAHVPFLLQVF 126          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: UPI00106CEAE6 (DNA polymerase zeta catalytic subunit-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CEAE6)

HSP 1 Score: 74.3 bits (181), Expect = 6.010e-14
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            + +R  FYGYH   + F++++ YNPR V +V  LLQ G +L +  QP+ESHI YLLQ F+D  L
Sbjct:  105 IVKRIPFYGYHEGEEEFIKIQFYNPRIVAKVVELLQNGAILNKIFQPYESHIPYLLQFFIDFNL 168          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: UPI0010A3E9F2 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3E9F2)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    2 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            ++ R   FYGYH   +LF+++ LY P+ V   A+LL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  117 SLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A0D3CY35_BRAOL (DNA polymerase n=22 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CY35_BRAOL)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            + R   FYGYH   + F+++ LY P+ V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYRPQDVSRAASLLLAGAVLGRSLQPYESHIPFILQFLVDYNL 181          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: V4KBU0_EUTSA (DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBU0_EUTSA)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            + R   FYGYH   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: R0I694_9BRAS (DNA polymerase n=4 Tax=Capsella rubella TaxID=81985 RepID=R0I694_9BRAS)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            + R  NFYG+H   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKNFYGFHSTEEAFVKIYLYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: H3CJK2_TETNG (DNA_pol_B_exo1 domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CJK2_TETNG)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-13
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    9 FYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            FYGYH   +LF+++ LYNP+ V  V  LLQ+G V+ +  QP+E HI +LLQ F+D+ L
Sbjct:  112 FYGYHAKEKLFMKIYLYNPQMVKRVCDLLQSGAVMNKSYQPYEGHIPFLLQLFIDYNL 169          
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A6D2L0Z3_9BRAS (DNA polymerase n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L0Z3_9BRAS)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-13
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 66
            + R   FYGYH   + F+++ LY+P  V   ASLL  G VLG+ LQP+ESHI +LLQ  VD+ L
Sbjct:  165 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLEGAVLGKSLQPYESHIPFLLQFLVDYNL 228          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML9_9STRA1.690e-41100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
D7G846_ECTSI6.780e-1550.75DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A3R7GZK3_9STRA2.870e-1444.26Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
UPI00106CEAE66.010e-1448.44DNA polymerase zeta catalytic subunit-like isoform... [more]
UPI0010A3E9F21.530e-1349.23LOW QUALITY PROTEIN: DNA polymerase zeta catalytic... [more]
A0A0D3CY35_BRAOL1.530e-1350.00DNA polymerase n=22 Tax=Brassiceae TaxID=981071 Re... [more]
V4KBU0_EUTSA1.530e-1350.00DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=7... [more]
R0I694_9BRAS1.530e-1350.00DNA polymerase n=4 Tax=Capsella rubella TaxID=8198... [more]
H3CJK2_TETNG1.570e-1350.00DNA_pol_B_exo1 domain-containing protein n=2 Tax=T... [more]
A0A6D2L0Z3_9BRAS3.900e-1350.00DNA polymerase n=5 Tax=Coluteocarpeae TaxID=139450... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.342.10DNA Polymerase, chain B, domain 1coord: 2..67
e-value: 3.1E-11
score: 45.0
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812DNA POLYMERASE ZETA CATALYTIC SUBUNITcoord: 3..66
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_437contigContig_437:13045..13245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132601mRNA_18870Tribonema minus UTEX_B_3156 mRNAContig_437 13045..13245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|132601|gw1.437.3.1 ID=Trimin1|132601|gw1.437.3.1|Name=jgi.p|Trimin1|132601|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPF
ESHISYLLQAFVDHGLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030559PolZ_Rev3
IPR012337RNaseH-like_sf