mRNA_18870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132601
Unique NamemRNA_18870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A835YML9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.690e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 201
            LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA
Sbjct:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 67
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.780e-15
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLA 201
            L V R   FYGYH + +LF++V + NP   G+VAS+LQAG VL  + QPFESH+ +LLQ F+D+ ++
Sbjct:  125 LEVVRGVPFYGYHGEEKLFVKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNIS 191
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A3R7GZK3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GZK3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.870e-14
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAF 183
            + + + T FYGYHP+P+LF+++ LYNPR +  V  L+++G +  +K QP+E+H+ +LLQ F
Sbjct:   66 MLIVQGTPFYGYHPEPKLFVQIFLYNPRVMASVVQLVESGCIGERKFQPYEAHVPFLLQVF 126
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: UPI00106CEAE6 (DNA polymerase zeta catalytic subunit-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CEAE6)

HSP 1 Score: 74.3 bits (181), Expect = 6.010e-14
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            + +R  FYGYH   + F++++ YNPR V +V  LLQ G +L +  QP+ESHI YLLQ F+D  L
Sbjct:  105 IVKRIPFYGYHEGEEEFIKIQFYNPRIVAKVVELLQNGAILNKIFQPYESHIPYLLQFFIDFNL 168
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: UPI0010A3E9F2 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3E9F2)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    4 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            ++ R   FYGYH   +LF+++ LY P+ V   A+LL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  117 SLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A0D3CY35_BRAOL (DNA polymerase n=22 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CY35_BRAOL)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            + R   FYGYH   + F+++ LY P+ V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYRPQDVSRAASLLLAGAVLGRSLQPYESHIPFILQFLVDYNL 181
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: V4KBU0_EUTSA (DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBU0_EUTSA)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            + R   FYGYH   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181
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BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: R0I694_9BRAS (DNA polymerase n=4 Tax=Capsella rubella TaxID=81985 RepID=R0I694_9BRAS)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            + R  NFYG+H   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L
Sbjct:  118 IVRAKNFYGFHSTEEAFVKIYLYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNL 181
[Close]
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: H3CJK2_TETNG (DNA_pol_B_exo1 domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CJK2_TETNG)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-13
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   25 FYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            FYGYH   +LF+++ LYNP+ V  V  LLQ+G V+ +  QP+E HI +LLQ F+D+ L
Sbjct:  112 FYGYHAKEKLFMKIYLYNPQMVKRVCDLLQSGAVMNKSYQPYEGHIPFLLQLFIDYNL 169
[Close]
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Match: A0A6D2L0Z3_9BRAS (DNA polymerase n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L0Z3_9BRAS)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-13
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGL 198
            + R   FYGYH   + F+++ LY+P  V   ASLL  G VLG+ LQP+ESHI +LLQ  VD+ L
Sbjct:  165 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLEGAVLGKSLQPYESHIPFLLQFLVDYNL 228
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132601 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML9_9STRA1.690e-41100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
D7G846_ECTSI6.780e-1550.75DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A3R7GZK3_9STRA2.870e-1444.26Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
UPI00106CEAE66.010e-1448.44DNA polymerase zeta catalytic subunit-like isoform... [more]
UPI0010A3E9F21.530e-1349.23LOW QUALITY PROTEIN: DNA polymerase zeta catalytic... [more]
A0A0D3CY35_BRAOL1.530e-1350.00DNA polymerase n=22 Tax=Brassiceae TaxID=981071 Re... [more]
V4KBU0_EUTSA1.530e-1350.00DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=7... [more]
R0I694_9BRAS1.530e-1350.00DNA polymerase n=4 Tax=Capsella rubella TaxID=8198... [more]
H3CJK2_TETNG1.570e-1350.00DNA_pol_B_exo1 domain-containing protein n=2 Tax=T... [more]
A0A6D2L0Z3_9BRAS3.900e-1350.00DNA polymerase n=5 Tax=Coluteocarpeae TaxID=139450... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_437contigContig_437:13045..13245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132601|gw1.437.3.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG ModuleM00293
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG koko:K02350
EC2.7.7.7
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Preferred nameREV3
DescriptionDNA polymerase. Source PGD
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0417@1|root,KOG0968@2759|Eukaryota,1ME5Y@121069|Pythiales
Evalue4.8e-17
Seed ortholog42099.EPrPV00000017847
Hectar predicted targeting categoryother localisation
TranscriptId132923
TrackFilteredModels1
ProteinId132601
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132601gene_18870Tribonema minus UTEX_B_3156 geneContig_437 13045..13245 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18870_1exon_18870_1Tribonema minus UTEX_B_3156 exonContig_437 13045..13245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18870CDS_18870Tribonema minus UTEX_B_3156 CDSContig_437 13045..13245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132601Trimin1|132601|gw1.437.3.1Tribonema minus UTEX_B_3156 polypeptideContig_437 13045..13245 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18870 ID=mRNA_18870|Name=jgi.p|Trimin1|132601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_437:13045..13245+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
G
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protein sequence of jgi.p|Trimin1|132601

>Trimin1|132601|gw1.437.3.1 ID=Trimin1|132601|gw1.437.3.1|Name=jgi.p|Trimin1|132601|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPF
ESHISYLLQAFVDHGLA
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mRNA from alignment at Contig_437:13045..13245+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18870 ID=mRNA_18870|Name=jgi.p|Trimin1|132601|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_437:13045..13245+ (Tribonema minus UTEX_B_3156 )
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
G
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Coding sequence (CDS) from alignment at Contig_437:13045..13245+

>mRNA_18870 ID=mRNA_18870|Name=jgi.p|Trimin1|132601|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_437:13045..13245+ (Tribonema minus UTEX_B_3156 )
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
G
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