Trimin1|131418|gw1.3.58.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|131418
Unique NameTrimin1|131418|gw1.3.58.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length370
Homology
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA)

HSP 1 Score: 480 bits (1236), Expect = 3.300e-167
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
            GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA
Sbjct:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 5.910e-99
Identity = 153/193 (79.27%), Postives = 167/193 (86.53%), Query Frame = 0
Query:    3 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSS--KKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWIN 193
            KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALAR G   +AWAAVHRLRGMGALT FDYEYALQAHEK RHWSGAL+LL HMD  NIKWT+RAC+HALLT GFAGR+N A QL+ +M ERG++P    YLQLIGEC RSS  +KVRDAGDSRGGSKQA+ +LQ MKQTG KPD+RHFTAVVDACGKAGDWI+
Sbjct:   75 KGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARNGNTADAWAAVHRLRGMGALTAFDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDIRHFTAVVDACGKAGDWID 267          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 299 bits (765), Expect = 9.650e-93
Identity = 174/372 (46.77%), Postives = 197/372 (52.96%), Query Frame = 0
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKK--VRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
            G+KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALARGGGK E WAAV RL  +GALT FDYE+ALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLT GFAGRLN A QL+++M +RG++P   +YLQLI EC R SKK  VRDAGDSRGGSKQA                   +A ++ CGKAGDW                                                                                       +  SY A INCYA+A +PDKAE VLA+M QS+                              RM   GVQP+L TW  IIHAADA  D++RA
Sbjct:  152 GHKGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWA---------------AAVHIFQQMQQKVKRAKKIDLMLTAYRSMLTSGQRPNVVTLTCILDQAGAAGECSITEDIWREMQRLKLTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKAYYQKGRLDEAVLIIDRMVVEGVQPNLDTWRSIIHAADALGDVRRA 508          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA)

HSP 1 Score: 258 bits (658), Expect = 8.950e-83
Identity = 126/154 (81.82%), Postives = 136/154 (88.31%), Query Frame = 0
Query:   22 KPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDV 175
            KPTVSE+RALL ALARGG   EA AAV RLRGMGALT FDYEYALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLTCGFAGRLNDAFQLI+QM   G+ P + +YLQLIGEC R+S KVRDAGDSRGGSKQAME+LQ MKQTGAKPD+
Sbjct:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 154          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.770e-68
Identity = 114/188 (60.64%), Postives = 137/188 (72.87%), Query Frame = 0
Query:    3 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGD 190
            KGKW AA+KAF+DAEAKHHKPTVSE RALL ALAR GG  EAWAAVHRLR +GALT  DYE+AL+AHEKP HWSGALKLL  MD N I WTVRAC+HALL CG AGRLNDA QL+ +MR+RG+ P   D+L LIGEC RS +K+R A D          + + M++    P+   ++A+++    AGD
Sbjct:    6 KGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGD 183          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.000e-64
Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 0
Query:   60 FDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDW 191
            F+YEYALQA+EK  HWSGAL+LL HMD NN KWTVRAC+HALL CGFAGRLNDAFQLI+QM +RGI+P SGDYLQLI EC +S KKVR AGDSR GSKQAMELLQ M+Q G  P+ +H+ A ++ CGKAGDW
Sbjct:    1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDW 132          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.740e-43
Identity = 178/368 (48.37%), Postives = 218/368 (59.24%), Query Frame = 0
Query:    5 KWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRS--SKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
            +W+ A+  F        +PT  E+RALL+A+A       A  A+ RL+  GA +  DYE A+QA+E    +  A++LL+ M      WT RAC+  LL  G AGRLN A QLI+ M+E GI+P   D+L L   CVR   S+ V  AGDSRGGSK A++LLQLM+ T   PDV++F A +  C +  + +N            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +  SY++ IN YA  K+P+KAE V A+M Q+A +                            RMR+AGVQP L TW  IIHAAD A DLKRA
Sbjct:  311 RWQDALHIFNAIS----EPTALEVRALLKAMACSHQPQHAMIALRRLQVSGANS-HDYELAIQAYENQLPFK-AMELLREMKREGFGWTHRACSAVLLAFGKAGRLNAAVQLIKAMQEVGISPDKVDFLMLTTNCVRDERSEVVTPAGDSRGGSKMAIKLLQLMRDTRVAPDVKNFNAALKVCARERNPVNASIIFQQMATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQDIWKEMHRLQLEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGDLKRA 672          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.450e-34
Identity = 114/287 (39.72%), Postives = 135/287 (47.04%), Query Frame = 0
Query:   85 MDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
            M+   + WT RAC+  L   G AGRLN A QLI +M +RGI+P   DYL LIG C R  K    AGD RGGS+QA+ELLQ M+  G  PD+RH+TA +  C   GD                                                  XXXXXXXXXXXXXXXXXXXX                   +  SY+  I+CYA A QPD+AEGVLA+M QSA +                            RMR AGV+PD  TW  IIHAAD   D+K+A
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGD-RGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGDIKKA 286          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z801_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z801_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.130e-34
Identity = 200/370 (54.05%), Postives = 229/370 (61.89%), Query Frame = 0
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
            G + KW  A++ F+  E    +PT  E+RALL  +A       A  A+ +LR +GA+T +DYE A+  H K      AL+LL  M+     WT RAC+  L   G  GRLN A QL  +M++R INP S DYL LI  C   SK VR                               TA +  C    D  N      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 N  +Y+ALINCYAMAKQ DKAE V+A+M+QSA + XXXXXXXXXXXXXXXXXXXXXXXXXXXRM  AG+QP L+TWNGIIHAAD   D+KRA
Sbjct:   20 GRRKKWNDALQVFESIE----EPTALEVRALLATVAYNDQPRHAMTALRQLRNIGAVTFYDYELAIHVHAKEFPIQ-ALELLHEMEREGFGWTQRACSTVLQAFGKDGRLNAALQLTDEMQQRNINPNSTDYLILIMGCA-CSKDVRRTXXXXXXXXXXXXXXXXXXXX-XXXXXXXXTAAMKVCVTERDMANAVSIFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIAEGIWREMHDRQLAPNETTYNALINCYAMAKQADKAENVVAEMIQSAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCAAGIQPSLRTWNGIIHAADTLGDIKRA 382          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.620e-33
Identity = 125/313 (39.94%), Postives = 155/313 (49.52%), Query Frame = 0
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDAC-GKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATI 312
            G + KW  A++ F+  E    +PT  E+RALL  +A       A  A+ +L+G GA+T  DYE A+ AH K      AL+LL  M+     WT+RA    L   G  GRLN A  LI +M +R  +P   DYL LI  C R    +R AGD RGGS+QA+E LQ M+  G  PD+RH+ A +  C  K      XXXXXXXXXXXXXXXXXXXXXX                                                               N  +Y+ALINCYA A+QPDKAEGVLA+MVQSA +
Sbjct:  107 GRRKKWNDALQIFRSIE----EPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLV-ALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMR-AGD-RGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAV 412          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZD3_9STRA3.300e-167100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA5.910e-9979.27PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA9.650e-9346.77PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJC7_9STRA8.950e-8381.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z794_9STRA1.770e-6860.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWR0_9STRA3.000e-6473.48PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CK07_9STRA9.740e-4348.37PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA6.450e-3439.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z801_9STRA7.130e-3454.05Smr domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z1B2_9STRA4.620e-3339.94PPR_long domain-containing protein n=1 Tax=Tribone... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 149..256
e-value: 3.1E-27
score: 97.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 257..370
e-value: 5.7E-28
score: 100.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..148
e-value: 9.0E-18
score: 66.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 162..222
e-value: 2.3E-12
score: 46.8
coord: 80..140
e-value: 1.2E-5
score: 25.2
coord: 267..326
e-value: 4.2E-12
score: 46.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 317..350
e-value: 3.7E-7
score: 27.9
coord: 281..315
e-value: 2.4E-6
score: 25.4
coord: 248..280
e-value: 5.7E-5
score: 21.0
coord: 178..210
e-value: 1.5E-6
score: 26.0
coord: 212..244
e-value: 1.1E-6
score: 26.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 315..349
score: 12.002681
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 10.742131
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 11.114816
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 8.758137
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 9.514466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..314
score: 9.350046
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 3..289
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 222..361
NoneNo IPR availablePANTHERPTHR47941:SF5PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 3..289
coord: 222..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:42941..46162 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131418mRNA_6Tribonema minus UTEX_B_3156 mRNAContig_3 42941..46162 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|131418|gw1.3.58.1 ID=Trimin1|131418|gw1.3.58.1|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp
GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHR
LRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHA
LLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAG
DSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINASNVFQQ
MRLEGIEPNVRTWNALLDAIGNAGQVEKMLAAYKEMCAAGEQPGVVAMNT
MLDHAGAAGEMDTVKDIWREMHDRQLEPNAYSYSALINCYAMAKQPDKAE
GVLAKMVQSATIKPNAITFNSIMKAYIKVERLDDAEHVISRMRTAGVQPD
LQTWNGIIHAADAADDLKRA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat