mRNA_6 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA) HSP 1 Score: 480 bits (1236), Expect = 3.300e-167 Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 1
Query: 1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA
Sbjct: 1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA) HSP 1 Score: 311 bits (797), Expect = 5.910e-99 Identity = 153/193 (79.27%), Postives = 167/193 (86.53%), Query Frame = 1
Query: 7 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSS--KKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWIN 579
KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALAR G +AWAAVHRLRGMGALT FDYEYALQAHEK RHWSGAL+LL HMD NIKWT+RAC+HALLT GFAGR+N A QL+ +M ERG++P YLQLIGEC RSS +KVRDAGDSRGGSKQA+ +LQ MKQTG KPD+RHFTAVVDACGKAGDWI+
Sbjct: 75 KGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARNGNTADAWAAVHRLRGMGALTAFDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDIRHFTAVVDACGKAGDWID 267
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA) HSP 1 Score: 299 bits (765), Expect = 9.650e-93 Identity = 174/372 (46.77%), Postives = 197/372 (52.96%), Query Frame = 1
Query: 1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKK--VRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
G+KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALARGGGK E WAAV RL +GALT FDYE+ALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLT GFAGRLN A QL+++M +RG++P +YLQLI EC R SKK VRDAGDSRGGSKQA +A ++ CGKAGDW + SY A INCYA+A +PDKAE VLA+M QS+ RM GVQP+L TW IIHAADA D++RA
Sbjct: 152 GHKGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWA---------------AAVHIFQQMQQKVKRAKKIDLMLTAYRSMLTSGQRPNVVTLTCILDQAGAAGECSITEDIWREMQRLKLTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKAYYQKGRLDEAVLIIDRMVVEGVQPNLDTWRSIIHAADALGDVRRA 508
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA) HSP 1 Score: 258 bits (658), Expect = 8.950e-83 Identity = 126/154 (81.82%), Postives = 136/154 (88.31%), Query Frame = 1
Query: 64 KPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDV 525
KPTVSE+RALL ALARGG EA AAV RLRGMGALT FDYEYALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLTCGFAGRLNDAFQLI+QM G+ P + +YLQLIGEC R+S KVRDAGDSRGGSKQAME+LQ MKQTGAKPD+
Sbjct: 1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 154
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.770e-68 Identity = 114/188 (60.64%), Postives = 137/188 (72.87%), Query Frame = 1
Query: 7 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGD 570
KGKW AA+KAF+DAEAKHHKPTVSE RALL ALAR GG EAWAAVHRLR +GALT DYE+AL+AHEKP HWSGALKLL MD N I WTVRAC+HALL CG AGRLNDA QL+ +MR+RG+ P D+L LIGEC RS +K+R A D + + M++ P+ ++A+++ AGD
Sbjct: 6 KGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGD 183
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA) HSP 1 Score: 211 bits (536), Expect = 3.000e-64 Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 1
Query: 178 FDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDW 573
F+YEYALQA+EK HWSGAL+LL HMD NN KWTVRAC+HALL CGFAGRLNDAFQLI+QM +RGI+P SGDYLQLI EC +S KKVR AGDSR GSKQAMELLQ M+Q G P+ +H+ A ++ CGKAGDW
Sbjct: 1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDW 132
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA) HSP 1 Score: 168 bits (426), Expect = 9.740e-43 Identity = 178/368 (48.37%), Postives = 218/368 (59.24%), Query Frame = 1
Query: 13 KWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRS--SKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
+W+ A+ F +PT E+RALL+A+A A A+ RL+ GA + DYE A+QA+E + A++LL+ M WT RAC+ LL G AGRLN A QLI+ M+E GI+P D+L L CVR S+ V AGDSRGGSK A++LLQLM+ T PDV++F A + C + + +N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + SY++ IN YA K+P+KAE V A+M Q+A + RMR+AGVQP L TW IIHAAD A DLKRA
Sbjct: 311 RWQDALHIFNAIS----EPTALEVRALLKAMACSHQPQHAMIALRRLQVSGANS-HDYELAIQAYENQLPFK-AMELLREMKREGFGWTHRACSAVLLAFGKAGRLNAAVQLIKAMQEVGISPDKVDFLMLTTNCVRDERSEVVTPAGDSRGGSKMAIKLLQLMRDTRVAPDVKNFNAALKVCARERNPVNASIIFQQMATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQDIWKEMHRLQLEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGDLKRA 672
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA) HSP 1 Score: 137 bits (346), Expect = 6.450e-34 Identity = 114/287 (39.72%), Postives = 135/287 (47.04%), Query Frame = 1
Query: 253 MDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
M+ + WT RAC+ L G AGRLN A QLI +M +RGI+P DYL LIG C R K AGD RGGS+QA+ELLQ M+ G PD+RH+TA + C GD XXXXXXXXXXXXXXXXXXXX + SY+ I+CYA A QPD+AEGVLA+M QSA + RMR AGV+PD TW IIHAAD D+K+A
Sbjct: 1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGD-RGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGDIKKA 286
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z801_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z801_9STRA) HSP 1 Score: 140 bits (354), Expect = 7.130e-34 Identity = 200/370 (54.05%), Postives = 229/370 (61.89%), Query Frame = 1
Query: 1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
G + KW A++ F+ E +PT E+RALL +A A A+ +LR +GA+T +DYE A+ H K AL+LL M+ WT RAC+ L G GRLN A QL +M++R INP S DYL LI C SK VR TA + C D N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N +Y+ALINCYAMAKQ DKAE V+A+M+QSA + XXXXXXXXXXXXXXXXXXXXXXXXXXXRM AG+QP L+TWNGIIHAAD D+KRA
Sbjct: 20 GRRKKWNDALQVFESIE----EPTALEVRALLATVAYNDQPRHAMTALRQLRNIGAVTFYDYELAIHVHAKEFPIQ-ALELLHEMEREGFGWTQRACSTVLQAFGKDGRLNAALQLTDEMQQRNINPNSTDYLILIMGCA-CSKDVRRTXXXXXXXXXXXXXXXXXXXX-XXXXXXXXTAAMKVCVTERDMANAVSIFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIAEGIWREMHDRQLAPNETTYNALINCYAMAKQADKAENVVAEMIQSAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCAAGIQPSLRTWNGIIHAADTLGDIKRA 382
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA) HSP 1 Score: 137 bits (346), Expect = 4.620e-33 Identity = 125/313 (39.94%), Postives = 155/313 (49.52%), Query Frame = 1
Query: 1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDAC-GKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATI 936
G + KW A++ F+ E +PT E+RALL +A A A+ +L+G GA+T DYE A+ AH K AL+LL M+ WT+RA L G GRLN A LI +M +R +P DYL LI C R +R AGD RGGS+QA+E LQ M+ G PD+RH+ A + C K XXXXXXXXXXXXXXXXXXXXXX N +Y+ALINCYA A+QPDKAEGVLA+MVQSA +
Sbjct: 107 GRRKKWNDALQIFRSIE----EPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLV-ALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMR-AGD-RGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAV 412 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCAATAAGGGCAAGTGGGAAGCAGCTGTCAAGGCCTTTCAAGATGCCGAback to top protein sequence of jgi.p|Trimin1|131418 >Trimin1|131418|gw1.3.58.1 ID=Trimin1|131418|gw1.3.58.1|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRback to top mRNA from alignment at Contig_3:42941..46162- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3222bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:42941..46162- >mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1110bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )back to top |