mRNA_6 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131418
Unique NamemRNA_6
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YZD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD3_9STRA)

HSP 1 Score: 480 bits (1236), Expect = 3.300e-167
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 1
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
            GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA
Sbjct:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 370          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z0J2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 5.910e-99
Identity = 153/193 (79.27%), Postives = 167/193 (86.53%), Query Frame = 1
Query:    7 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSS--KKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWIN 579
            KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALAR G   +AWAAVHRLRGMGALT FDYEYALQAHEK RHWSGAL+LL HMD  NIKWT+RAC+HALLT GFAGR+N A QL+ +M ERG++P    YLQLIGEC RSS  +KVRDAGDSRGGSKQA+ +LQ MKQTG KPD+RHFTAVVDACGKAGDWI+
Sbjct:   75 KGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARNGNTADAWAAVHRLRGMGALTAFDYEYALQAHEKSRHWSGALRLLSHMDKKNIKWTIRACSHALLTLGFAGRMNAALQLLDKMCERGLSPHPDSYLQLIGECRRSSSRQKVRDAGDSRGGSKQAVAMLQHMKQTGTKPDIRHFTAVVDACGKAGDWID 267          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 299 bits (765), Expect = 9.650e-93
Identity = 174/372 (46.77%), Postives = 197/372 (52.96%), Query Frame = 1
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKK--VRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
            G+KGKWEAAVKAFQDAEAKHHKPTVSE RALL ALARGGGK E WAAV RL  +GALT FDYE+ALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLT GFAGRLN A QL+++M +RG++P   +YLQLI EC R SKK  VRDAGDSRGGSKQA                   +A ++ CGKAGDW                                                                                       +  SY A INCYA+A +PDKAE VLA+M QS+                              RM   GVQP+L TW  IIHAADA  D++RA
Sbjct:  152 GHKGKWEAAVKAFQDAEAKHHKPTVSENRALLFALARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWA---------------AAVHIFQQMQQKVKRAKKIDLMLTAYRSMLTSGQRPNVVTLTCILDQAGAAGECSITEDIWREMQRLKLTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYNSVMKAYYQKGRLDEAVLIIDRMVVEGVQPNLDTWRSIIHAADALGDVRRA 508          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CJC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC7_9STRA)

HSP 1 Score: 258 bits (658), Expect = 8.950e-83
Identity = 126/154 (81.82%), Postives = 136/154 (88.31%), Query Frame = 1
Query:   64 KPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDV 525
            KPTVSE+RALL ALARGG   EA AAV RLRGMGALT FDYEYALQAHEKPRHWSGAL+LL HMD NNIKWTVRAC+HALLTCGFAGRLNDAFQLI+QM   G+ P + +YLQLIGEC R+S KVRDAGDSRGGSKQAME+LQ MKQTGAKPD+
Sbjct:    1 KPTVSEVRALLFALARGGDTDEACAAVQRLRGMGALTAFDYEYALQAHEKPRHWSGALRLLSHMDKNNIKWTVRACSHALLTCGFAGRLNDAFQLIQQMHNHGMRPCAVNYLQLIGECRRNSNKVRDAGDSRGGSKQAMEMLQHMKQTGAKPDI 154          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z794_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z794_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.770e-68
Identity = 114/188 (60.64%), Postives = 137/188 (72.87%), Query Frame = 1
Query:    7 KGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGD 570
            KGKW AA+KAF+DAEAKHHKPTVSE RALL ALAR GG  EAWAAVHRLR +GALT  DYE+AL+AHEKP HWSGALKLL  MD N I WTVRAC+HALL CG AGRLNDA QL+ +MR+RG+ P   D+L LIGEC RS +K+R A D          + + M++    P+   ++A+++    AGD
Sbjct:    6 KGKWAAALKAFEDAEAKHHKPTVSENRALLYALARDGGPAEAWAAVHRLRVLGALTAVDYEHALRAHEKPHHWSGALKLLSDMDKNEITWTVRACSHALLICGVAGRLNDALQLVEEMRKRGMRPGPVDFLHLIGECRRSRRKLRAAED----------IWREMQRLKITPNTWSYSALINCYTVAGD 183          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.000e-64
Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  178 FDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDW 573
            F+YEYALQA+EK  HWSGAL+LL HMD NN KWTVRAC+HALL CGFAGRLNDAFQLI+QM +RGI+P SGDYLQLI EC +S KKVR AGDSR GSKQAMELLQ M+Q G  P+ +H+ A ++ CGKAGDW
Sbjct:    1 FNYEYALQAYEKSSHWSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDW 132          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.740e-43
Identity = 178/368 (48.37%), Postives = 218/368 (59.24%), Query Frame = 1
Query:   13 KWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRS--SKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
            +W+ A+  F        +PT  E+RALL+A+A       A  A+ RL+  GA +  DYE A+QA+E    +  A++LL+ M      WT RAC+  LL  G AGRLN A QLI+ M+E GI+P   D+L L   CVR   S+ V  AGDSRGGSK A++LLQLM+ T   PDV++F A +  C +  + +N            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +  SY++ IN YA  K+P+KAE V A+M Q+A +                            RMR+AGVQP L TW  IIHAAD A DLKRA
Sbjct:  311 RWQDALHIFNAIS----EPTALEVRALLKAMACSHQPQHAMIALRRLQVSGANS-HDYELAIQAYENQLPFK-AMELLREMKREGFGWTHRACSAVLLAFGKAGRLNAAVQLIKAMQEVGISPDKVDFLMLTTNCVRDERSEVVTPAGDSRGGSKMAIKLLQLMRDTRVAPDVKNFNAALKVCARERNPVNASIIFQQMATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQDIWKEMHRLQLEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTFTSLMKAYIEVQRLDAAEQVISRMRSAGVQPSLPTWKSIIHAADTAGDLKRA 672          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.450e-34
Identity = 114/287 (39.72%), Postives = 135/287 (47.04%), Query Frame = 1
Query:  253 MDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
            M+   + WT RAC+  L   G AGRLN A QLI +M +RGI+P   DYL LIG C R  K    AGD RGGS+QA+ELLQ M+  G  PD+RH+TA +  C   GD                                                  XXXXXXXXXXXXXXXXXXXX                   +  SY+  I+CYA A QPD+AEGVLA+M QSA +                            RMR AGV+PD  TW  IIHAAD   D+K+A
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGD-RGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGDIKKA 286          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z801_9STRA (Smr domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z801_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.130e-34
Identity = 200/370 (54.05%), Postives = 229/370 (61.89%), Query Frame = 1
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMRTAGVQPDLQTWNGIIHAADAADDLKRA 1110
            G + KW  A++ F+  E    +PT  E+RALL  +A       A  A+ +LR +GA+T +DYE A+  H K      AL+LL  M+     WT RAC+  L   G  GRLN A QL  +M++R INP S DYL LI  C   SK VR                               TA +  C    D  N      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 N  +Y+ALINCYAMAKQ DKAE V+A+M+QSA + XXXXXXXXXXXXXXXXXXXXXXXXXXXRM  AG+QP L+TWNGIIHAAD   D+KRA
Sbjct:   20 GRRKKWNDALQVFESIE----EPTALEVRALLATVAYNDQPRHAMTALRQLRNIGAVTFYDYELAIHVHAKEFPIQ-ALELLHEMEREGFGWTQRACSTVLQAFGKDGRLNAALQLTDEMQQRNINPNSTDYLILIMGCA-CSKDVRRTXXXXXXXXXXXXXXXXXXXX-XXXXXXXXTAAMKVCVTERDMANAVSIFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIAEGIWREMHDRQLAPNETTYNALINCYAMAKQADKAENVVAEMIQSAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXRMCAAGIQPSLRTWNGIIHAADTLGDIKRA 382          
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.620e-33
Identity = 125/313 (39.94%), Postives = 155/313 (49.52%), Query Frame = 1
Query:    1 GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHRLRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHALLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAGDSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDAC-GKAGDWINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAYSYSALINCYAMAKQPDKAEGVLAKMVQSATI 936
            G + KW  A++ F+  E    +PT  E+RALL  +A       A  A+ +L+G GA+T  DYE A+ AH K      AL+LL  M+     WT+RA    L   G  GRLN A  LI +M +R  +P   DYL LI  C R    +R AGD RGGS+QA+E LQ M+  G  PD+RH+ A +  C  K      XXXXXXXXXXXXXXXXXXXXXX                                                               N  +Y+ALINCYA A+QPDKAEGVLA+MVQSA +
Sbjct:  107 GRRKKWNDALQIFRSIE----EPTALEVRALLGTMAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELPLV-ALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMR-AGD-RGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAV 412          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131418 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZD3_9STRA3.300e-167100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0J2_9STRA5.910e-9979.27PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA9.650e-9346.77PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CJC7_9STRA8.950e-8381.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z794_9STRA1.770e-6860.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWR0_9STRA3.000e-6473.48PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836CK07_9STRA9.740e-4348.37PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA6.450e-3439.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z801_9STRA7.130e-3454.05Smr domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835Z1B2_9STRA4.620e-3339.94PPR_long domain-containing protein n=1 Tax=Tribone... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:42941..46162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131418|gw1.3.58.1
Descriptionendonuclease activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Evalue1.16e-05
Seed ortholog227086.JGI_V11_89959
Hectar predicted targeting categoryother localisation
TranscriptId131740
TrackFilteredModels1
ProteinId131418
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131418gene_6Tribonema minus UTEX_B_3156 geneContig_3 42941..46162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131418Trimin1|131418|gw1.3.58.1Tribonema minus UTEX_B_3156 polypeptideContig_3 42941..46162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6_3exon_6_3Tribonema minus UTEX_B_3156 exonContig_3 42941..43088 -
exon_6_2exon_6_2Tribonema minus UTEX_B_3156 exonContig_3 44641..44990 -
exon_6_1exon_6_1Tribonema minus UTEX_B_3156 exonContig_3 45551..46162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6CDS_6Tribonema minus UTEX_B_3156 CDSContig_3 45551..46162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAATAAGGGCAAGTGGGAAGCAGCTGTCAAGGCCTTTCAAGATGCCGA
GGCCAAGCATCACAAGCCGACGGTCTCCGAGATCAGAGCTCTACTACGTG
CGCTGGCCCGGGGCGGTGGTAAGGGCGAGGCCTGGGCTGCTGTGCACCGA
TTGCGTGGCATGGGTGCTCTCACTGTCTTCGATTACGAGTACGCCCTCCA
GGCGCACGAGAAGCCCCGCCACTGGTCTGGAGCCTTGAAGCTGCTGAAAC
ACATGGACGCGAACAACATCAAATGGACGGTCCGTGCCTGCAACCACGCG
TTACTCACATGTGGATTTGCAGGGCGCTTAAATGATGCGTTCCAGCTGAT
ACGGCAAATGCGTGAACGCGGAATTAACCCCGCGTCTGGTGATTACCTCC
AGCTCATTGGCGAATGTGTTCGCAGCAGCAAAAAGGTGCGCGATGCTGGG
GACAGTAGAGGTGGCAGCAAGCAGGCAATGGAACTGCTGCAGCTCATGAA
GCAGACAGGCGCAAAGCCCGATGTTCGACACTTCACAGCCGTTGTGGATG
CTTGCGGAAAAGCAGGGGACTGGATCAACGCCTCCAACGTCTTTCAGCAG
ATGAGGCTTGAGGGCATTGAGCCGAATGTACGGACTTGGAATGCGCTTTT
GGATGCCATTGGCAACGCGGGCCAGGTGGAAAAAATGCTGGCAGCATATA
AGGAGATGTGTGCAGCAGGAGAACAGCCAGGTGTAGTTGCCATGAACACA
ATGCTAGATCATGCTGGCGCAGCGGGGGAGATGGACACTGTCAAGGACAT
CTGGAGGGAGATGCATGATCGCCAGCTGGAGCCTAATGCCTACAGCTATT
CTGCTTTGATCAACTGCTATGCAATGGCAAAGCAGCCGGACAAGGCGGAG
GGAGTGCTTGCAAAAATGGTGCAGTCTGCCACCATCAAGCCGAATGCCAT
CACATTCAATAGCATTATGAAGGCATACATCAAGGTGGAGCGCCTGGACG
ATGCAGAGCATGTCATCAGCAGGATGCGTACTGCAGGGGTACAGCCAGAC
CTTCAGACGTGGAATGGCATCATACATGCTGCAGATGCAGCGGATGATCT
CAAGAGGGCA
back to top

protein sequence of jgi.p|Trimin1|131418

>Trimin1|131418|gw1.3.58.1 ID=Trimin1|131418|gw1.3.58.1|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp
GNKGKWEAAVKAFQDAEAKHHKPTVSEIRALLRALARGGGKGEAWAAVHR
LRGMGALTVFDYEYALQAHEKPRHWSGALKLLKHMDANNIKWTVRACNHA
LLTCGFAGRLNDAFQLIRQMRERGINPASGDYLQLIGECVRSSKKVRDAG
DSRGGSKQAMELLQLMKQTGAKPDVRHFTAVVDACGKAGDWINASNVFQQ
MRLEGIEPNVRTWNALLDAIGNAGQVEKMLAAYKEMCAAGEQPGVVAMNT
MLDHAGAAGEMDTVKDIWREMHDRQLEPNAYSYSALINCYAMAKQPDKAE
GVLAKMVQSATIKPNAITFNSIMKAYIKVERLDDAEHVISRMRTAGVQPD
LQTWNGIIHAADAADDLKRA
back to top

mRNA from alignment at Contig_3:42941..46162-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3222bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )
GGCAATAAGGGCAAGTGGGAAGCAGCTGTCAAGGCCTTTCAAGATGCCGA GGCCAAGCATCACAAGCCGACGGTCTCCGAGATCAGAGCTCTACTACGTG CGCTGGCCCGGGGCGGTGGTAAGGGCGAGGCCTGGGCTGCTGTGCACCGA TTGCGTGGCATGGGTGCTCTCACTGTCTTCGATTACGAGTACGCCCTCCA GGCGCACGAGAAGCCCCGCCACTGGTCTGGAGCCTTGAAGCTGCTGAAAC ACATGGACGCGAACAACATCAAATGGACGGTCCGTGCCTGCAACCACGCG TTACTCACATGTGGATTTGCAGGGCGCTTAAATGATGCGTTCCAGCTGAT ACGGCAAATGCGTGAACGCGGAATTAACCCCGCGTCTGGTGATTACCTCC AGCTCATTGGCGAATGTGTTCGCAGCAGCAAAAAGGTGCGCGATGCTGGG GACAGTAGAGGTGGCAGCAAGCAGGCAATGGAACTGCTGCAGCTCATGAA GCAGACAGGCGCAAAGCCCGATGTTCGACACTTCACAGCCGTTGTGGATG CTTGCGGAAAAGCAGGGGACTGGATCAACGCCTCCAACGTCTTTCAGCAG ATGAGGCTTGAGGTAAACACGAGTTTACACTTACCTACCTTGCTTATCCT GCTTGAATGGATCTGTAAACCTCAGCAACTGAGTTACCTGACTTGCATCA GAGGTTGTTACAAGCAGGCTGCTGTAGCACGCACAGTACTGCTAAGTAGG CCCAACTGTTAACCTATTGCTTTTCTACGATTCAAAGGCATTTCGTTTTA CAGGCTCAAGTAAGTTGGTCACACGCGCGGTTGCCAATTGAGTGCAAATT ATTGGACATGTTTGCGTTTACCGCTTTTTTGCGCTATCGACCATTCAATA CCAAATATGCAGCCAGTTATTATATGTACCACCACTATGTAGCTCCACTA ATACAGAAGTACAATGCACTCAAGGCGTGCAAGCACATTATGCACAAGTA AGAGCAGCAAAATGGAGGCGCAATGTCAATGACGCCTCAGAATCTTGATG CCAGTAAGCAGCCGTATGGTAGTTTGGTGACCCCGGGGCCTGCCGTCAAC ATATGTATGATGCACCACTGTCTGCAGCATGATTGATAATTCTTGCCGCC GCCGGTCTGCTTTTTGCTGCAGGGCATTGAGCCGAATGTACGGACTTGGA ATGCGCTTTTGGATGCCATTGGCAACGCGGGCCAGGTGGAAAAAATGCTG GCAGCATATAAGGAGATGTGTGCAGCAGGAGAACAGCCAGGTGTAGTTGC CATGAACACAATGCTAGATCATGCTGGCGCAGCGGGGGAGATGGACACTG TCAAGGACATCTGGAGGGAGATGCATGATCGCCAGCTGGAGCCTAATGCC TACAGCTATTCTGCTTTGATCAACTGCTATGCAATGGCAAAGCAGCCGGA CAAGGCGGAGGGAGTGCTTGCAAAAATGGTGCAGTCTGCCACCATCAAGC CGAATGCCATCACATTCAATAGGTACGCACTGCAATGTACACACATCTGC TGCAAAGTACGTGTTACAATGCAGATTCATAGGCCAGCTATTGTGTCAAA TTCGCAGAGTAGCAAAGTCCGTGGTAGCATAGTATTGTGGTGAACGTAAC ATAGCAGCATAAAGGTTGTTTCATAGCGCAATGTAACAAAGAAGCATCAA GCATATCTGCCCTTGAGATGACATGTGATAATGTGTTTGCTCAAACAACA CAACCGTTACGGTGCTTGTGAGCAGCTGCAACAGCTGCGCTACAAGCTAG TTGTGCTCAAACTCATAATCCTCTTGTGTCGGTAATGGTTTGTGCCGGTG CTTGGCATTGCAAACGTTAAGCATCAATGCCCTAGCTACTTGTATACTAT TAGGTGGCTGCGCATCATGTACTGCCACTGCTGTCATTTGCTCTATTGCG TTGTTAAGCATGCAACGCATTGCAGATTGCTGAAGCGTCAAGTTTCTGCA GCTGCCATCATGCTGTGATGTTGCACCATTCAGTTGCCTCAGGGTGATAG GCATACTATATGATTGTGCACAAGTGCAGCGCCCACCTTGGCTGCATTGA CGTTCATGGTTCAAGTTGACGTGCACCTGCATCTGATAAAGCTGCCCAAC GAAGTCTTGTACAGCGACGGCTACGATATAAGAGCGCTCAATCTGAGAGC GGTCACAGTATAACAGAGTTCTGACGGCTGAACACGGATCTGGTCGATAT AAGAGCGGTTTTGTGCTGCTCAAAGCTGACCACTCTTATATCGTGTCCAC ATACCATCCGCCACTTCACGACTGGTGCATGACGCGGAGATGTGTGCCAA AATCATGGGAAGGGGTCTCTTTATAACAAGATCATGCGCTTGGCACCGCC ACCGCAGCTGCTGTGCGGTTGCTGCGGCTTAATTTGGAAGCCAGCTTCAA CTCCTGGTGCTCTAACCTACTTGTTTACTTCAAACCCTAGTACCAGGACT AGGGTCAGCCCAGGATTTTCCCTAACCCTAGTTAAGCCGAAGGACGATAT AAGAGCGGTCACAGTATAACCGTGGTGAGGCTGGCATGACAAACCCGCTT GTATACCGTAGCCGTCGTGTCGCGAGGGCATGCACAGAAGCTCATGCATT GCTATGTGTTGACATGTAGTGCATGCAGCGCCATGGGATGATCGAACGTG AACACCTTCAAAGGTCAAGGATTGTCTGACTCCAATTATGCTGTAGCAGT TGCCAAATAGAATGCTGCACGATATGTGTTACCGGAGCGTTTCATGTTCT GTCATTTGCATCGCATGTAGTCCTGTAAGCATGTGCAAGGCTACTAGCAC AGAGGGGCACATGGTGTAATGCATTTAAAGCATCATAAGCTGACTTGTTC CGACTCCAGGCTTAAAGCATGCAAGAACTGGCACATTTGCAGCCACTACA GTTGCCTTCAGCCCAGCTCCTGGACCAGTAGACCAAGTGAGGAAACTTGA TGAAGCTGTTGCATGCCAGATGCAGTGCTCAACCAGTTTCCTACTTCTCT TTCTTGTTTCTCTGGAACAATCAGCATTATGAAGGCATACATCAAGGTGG AGCGCCTGGACGATGCAGAGCATGTCATCAGCAGGATGCGTACTGCAGGG GTACAGCCAGACCTTCAGACGTGGAATGGCATCATACATGCTGCAGATGC AGCGGATGATCTCAAGAGGGCA
back to top

Coding sequence (CDS) from alignment at Contig_3:42941..46162-

>mRNA_6 ID=mRNA_6|Name=jgi.p|Trimin1|131418|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1110bp|location=Sequence derived from alignment at Contig_3:42941..46162- (Tribonema minus UTEX_B_3156 )
GGCAATAAGGGCAAGTGGGAAGCAGCTGTCAAGGCCTTTCAAGATGCCGA
GGCCAAGCATCACAAGCCGACGGTCTCCGAGATCAGAGCTCTACTACGTG
CGCTGGCCCGGGGCGGTGGTAAGGGCGAGGCCTGGGCTGCTGTGCACCGA
TTGCGTGGCATGGGTGCTCTCACTGTCTTCGATTACGAGTACGCCCTCCA
GGCGCACGAGAAGCCCCGCCACTGGTCTGGAGCCTTGAAGCTGCTGAAAC
ACATGGACGCGAACAACATCAAATGGACGGTCCGTGCCTGCAACCACGCG
TTACTCACATGTGGATTTGCAGGGCGCTTAAATGATGCGTTCCAGCTGAT
ACGGCAAATGCGTGAACGCGGAATTAACCCCGCGTCTGGTGATTACCTCC
AGCTCATTGGCGAATGTGTTCGCAGCAGCAAAAAGGTGCGCGATGCTGGG
GACAGTAGAGGTGGCAGCAAGCAGGCAATGGAACTGCTGCAGCTCATGAA
GCAGACAGGCGCAAAGCCCGATGTTCGACACTTCACAGCCGTTGTGGATG
CTTGCGGAAAAGCAGGGGACTGGATCAACGCCTCCAACGTCTTTCAGCAG
ATGAGGCTTGAGGGCATTGAGCCGAATGTACGGACTTGGAATGCGCTTTT
GGATGCCATTGGCAACGCGGGCCAGGTGGAAAAAATGCTGGCAGCATATA
AGGAGATGTGTGCAGCAGGAGAACAGCCAGGTGTAGTTGCCATGAACACA
ATGCTAGATCATGCTGGCGCAGCGGGGGAGATGGACACTGTCAAGGACAT
CTGGAGGGAGATGCATGATCGCCAGCTGGAGCCTAATGCCTACAGCTATT
CTGCTTTGATCAACTGCTATGCAATGGCAAAGCAGCCGGACAAGGCGGAG
GGAGTGCTTGCAAAAATGGTGCAGTCTGCCACCATCAAGCCGAATGCCAT
CACATTCAATAGCATTATGAAGGCATACATCAAGGTGGAGCGCCTGGACG
ATGCAGAGCATGTCATCAGCAGGATGCGTACTGCAGGGGTACAGCCAGAC
CTTCAGACGTGGAATGGCATCATACATGCTGCAGATGCAGCGGATGATCT
CAAGAGGGCA
back to top