Trimin1|128972|gw1.64.2.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|128972
Unique NameTrimin1|128972|gw1.64.2.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length80
Homology
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A835YML9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.740e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR
Sbjct:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVF 79
            L V R   FYGYH + +LF++V + NP   G+VAS+LQAG VL  + QPFESH+ +LLQ F+D+ ++G  Y H+R+A+F
Sbjct:  125 LEVVRGVPFYGYHGEEKLFVKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNISGMSYVHLRNALF 203          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI00106CEAE6 (DNA polymerase zeta catalytic subunit-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CEAE6)

HSP 1 Score: 79.7 bits (195), Expect = 1.320e-15
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + +R  FYGYH   + F++++ YNPR V +V  LLQ G +L +  QP+ESHI YLLQ F+D  L G    H R   FR
Sbjct:  105 IVKRIPFYGYHEGEEEFIKIQFYNPRIVAKVVELLQNGAILNKIFQPYESHIPYLLQFFIDFNLYGMNLVHARKVHFR 182          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI000B8C79BE (DNA polymerase zeta catalytic subunit-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C79BE)

HSP 1 Score: 77.8 bits (190), Expect = 6.160e-15
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    2 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            ++ R   FYGYH   +LF+++ LY P  V   ASLL  G VL + LQP+ESHI ++LQ  +D+ L G  Y H+ H  FR
Sbjct:  117 SLVRAKRFYGYHGSEELFVKIYLYYPHDVARAASLLLGGSVLDKSLQPYESHIPFILQFLIDYNLYGMGYIHLSHIKFR 195          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A0D3CY35_BRAOL (DNA polymerase n=22 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CY35_BRAOL)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + R   FYGYH   + F+++ LY P+ V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYRPQDVSRAASLLLAGAVLGRSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: V4KBU0_EUTSA (DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBU0_EUTSA)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + R   FYGYH   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: R0I694_9BRAS (DNA polymerase n=4 Tax=Capsella rubella TaxID=81985 RepID=R0I694_9BRAS)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + R  NFYG+H   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKNFYGFHSTEEAFVKIYLYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI0010A3E9F2 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3E9F2)

HSP 1 Score: 77.0 bits (188), Expect = 1.160e-14
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0
Query:    2 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            ++ R   FYGYH   +LF+++ LY P+ V   A+LL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  117 SLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHLHLLKMKFR 195          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A6D2L0Z3_9BRAS (DNA polymerase n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L0Z3_9BRAS)

HSP 1 Score: 76.3 bits (186), Expect = 2.170e-14
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + R   FYGYH   + F+++ LY+P  V   ASLL  G VLG+ LQP+ESHI +LLQ  VD+ L G  + H+    FR
Sbjct:  165 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLEGAVLGKSLQPYESHIPFLLQFLVDYNLYGMGHVHISKMKFR 242          
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A843XKH4_COLES (DNA polymerase zeta catalytic subunit n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843XKH4_COLES)

HSP 1 Score: 76.3 bits (186), Expect = 2.180e-14
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0
Query:    3 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
            + R   FYGYH   +LF+++ LYNP  V  VA+LL  G +L + +QP+ESHI +LLQ  VD+ L G  + H    +FR
Sbjct:  206 LVRAKKFYGYHSTEELFVKIYLYNPADVARVAALLLGGSILNRSIQPYESHIPFLLQFMVDYNLYGMAHLHTSKVMFR 283          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML9_9STRA1.740e-51100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
D7G846_ECTSI5.470e-1950.63DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
UPI00106CEAE61.320e-1546.15DNA polymerase zeta catalytic subunit-like isoform... [more]
UPI000B8C79BE6.160e-1545.57DNA polymerase zeta catalytic subunit-like n=1 Tax... [more]
A0A0D3CY35_BRAOL8.530e-1546.15DNA polymerase n=22 Tax=Brassiceae TaxID=981071 Re... [more]
V4KBU0_EUTSA8.530e-1546.15DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=7... [more]
R0I694_9BRAS8.530e-1546.15DNA polymerase n=4 Tax=Capsella rubella TaxID=8198... [more]
UPI0010A3E9F21.160e-1445.57LOW QUALITY PROTEIN: DNA polymerase zeta catalytic... [more]
A0A6D2L0Z3_9BRAS2.170e-1446.15DNA polymerase n=5 Tax=Coluteocarpeae TaxID=139450... [more]
A0A843XKH4_COLES2.180e-1444.87DNA polymerase zeta catalytic subunit n=1 Tax=Colo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.342.10DNA Polymerase, chain B, domain 1coord: 2..80
e-value: 1.3E-12
score: 49.5
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812DNA POLYMERASE ZETA CATALYTIC SUBUNITcoord: 3..80
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:622348..622587 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128972mRNA_10142Tribonema minus UTEX_B_3156 mRNAContig_64 622348..622587 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|128972|gw1.64.2.1 ID=Trimin1|128972|gw1.64.2.1|Name=jgi.p|Trimin1|128972|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPF
ESHISYLLQAFVDHGLAGYEYAHMRHAVFR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030559PolZ_Rev3
IPR012337RNaseH-like_sf