mRNA_10142 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128972
Unique NamemRNA_10142
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A835YML9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.740e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR
Sbjct:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 80
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BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.470e-19
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVF 237
            L V R   FYGYH + +LF++V + NP   G+VAS+LQAG VL  + QPFESH+ +LLQ F+D+ ++G  Y H+R+A+F
Sbjct:  125 LEVVRGVPFYGYHGEEKLFVKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNISGMSYVHLRNALF 203
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BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI00106CEAE6 (DNA polymerase zeta catalytic subunit-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CEAE6)

HSP 1 Score: 79.7 bits (195), Expect = 1.320e-15
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + +R  FYGYH   + F++++ YNPR V +V  LLQ G +L +  QP+ESHI YLLQ F+D  L G    H R   FR
Sbjct:  105 IVKRIPFYGYHEGEEEFIKIQFYNPRIVAKVVELLQNGAILNKIFQPYESHIPYLLQFFIDFNLYGMNLVHARKVHFR 182
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BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI000B8C79BE (DNA polymerase zeta catalytic subunit-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C79BE)

HSP 1 Score: 77.8 bits (190), Expect = 6.160e-15
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    4 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            ++ R   FYGYH   +LF+++ LY P  V   ASLL  G VL + LQP+ESHI ++LQ  +D+ L G  Y H+ H  FR
Sbjct:  117 SLVRAKRFYGYHGSEELFVKIYLYYPHDVARAASLLLGGSVLDKSLQPYESHIPFILQFLIDYNLYGMGYIHLSHIKFR 195
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BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A0D3CY35_BRAOL (DNA polymerase n=22 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CY35_BRAOL)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + R   FYGYH   + F+++ LY P+ V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYRPQDVSRAASLLLAGAVLGRSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195
[Close]
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: V4KBU0_EUTSA (DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KBU0_EUTSA)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + R   FYGYH   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195
[Close]
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: R0I694_9BRAS (DNA polymerase n=4 Tax=Capsella rubella TaxID=81985 RepID=R0I694_9BRAS)

HSP 1 Score: 77.4 bits (189), Expect = 8.530e-15
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + R  NFYG+H   + F+++ LY+P  V   ASLL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  118 IVRAKNFYGFHSTEEAFVKIYLYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHVHISKMKFR 195
[Close]
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: UPI0010A3E9F2 (LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3E9F2)

HSP 1 Score: 77.0 bits (188), Expect = 1.160e-14
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    4 TVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            ++ R   FYGYH   +LF+++ LY P+ V   A+LL AG VLG+ LQP+ESHI ++LQ  VD+ L G  + H+    FR
Sbjct:  117 SLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHLHLLKMKFR 195
[Close]
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A6D2L0Z3_9BRAS (DNA polymerase n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L0Z3_9BRAS)

HSP 1 Score: 76.3 bits (186), Expect = 2.170e-14
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + R   FYGYH   + F+++ LY+P  V   ASLL  G VLG+ LQP+ESHI +LLQ  VD+ L G  + H+    FR
Sbjct:  165 IVRAKKFYGYHSTEEAFVKIYLYHPHDVARAASLLLEGAVLGKSLQPYESHIPFLLQFLVDYNLYGMGHVHISKMKFR 242
[Close]
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Match: A0A843XKH4_COLES (DNA polymerase zeta catalytic subunit n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843XKH4_COLES)

HSP 1 Score: 76.3 bits (186), Expect = 2.180e-14
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    7 VARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPFESHISYLLQAFVDHGLAGYEYAHMRHAVFR 240
            + R   FYGYH   +LF+++ LYNP  V  VA+LL  G +L + +QP+ESHI +LLQ  VD+ L G  + H    +FR
Sbjct:  206 LVRAKKFYGYHSTEELFVKIYLYNPADVARVAALLLGGSILNRSIQPYESHIPFLLQFMVDYNLYGMAHLHTSKVMFR 283
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128972 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YML9_9STRA1.740e-51100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
D7G846_ECTSI5.470e-1950.63DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
UPI00106CEAE61.320e-1546.15DNA polymerase zeta catalytic subunit-like isoform... [more]
UPI000B8C79BE6.160e-1545.57DNA polymerase zeta catalytic subunit-like n=1 Tax... [more]
A0A0D3CY35_BRAOL8.530e-1546.15DNA polymerase n=22 Tax=Brassiceae TaxID=981071 Re... [more]
V4KBU0_EUTSA8.530e-1546.15DNA polymerase n=7 Tax=Eutrema salsugineum TaxID=7... [more]
R0I694_9BRAS8.530e-1546.15DNA polymerase n=4 Tax=Capsella rubella TaxID=8198... [more]
UPI0010A3E9F21.160e-1445.57LOW QUALITY PROTEIN: DNA polymerase zeta catalytic... [more]
A0A6D2L0Z3_9BRAS2.170e-1446.15DNA polymerase n=5 Tax=Coluteocarpeae TaxID=139450... [more]
A0A843XKH4_COLES2.180e-1444.87DNA polymerase zeta catalytic subunit n=1 Tax=Colo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:622348..622587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128972|gw1.64.2.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG ModuleM00293
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG koko:K02350
EC2.7.7.7
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Preferred nameAHDC1
DescriptionDNA polymerase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0417@1|root,KOG0968@2759|Eukaryota
Evalue8.97e-20
Seed ortholog2880.D7G846
Hectar predicted targeting categoryother localisation
TranscriptId129294
TrackFilteredModels1
ProteinId128972
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128972gene_10142Tribonema minus UTEX_B_3156 geneContig_64 622348..622587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10142_1exon_10142_1Tribonema minus UTEX_B_3156 exonContig_64 622348..622587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10142CDS_10142Tribonema minus UTEX_B_3156 CDSContig_64 622348..622587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128972Trimin1|128972|gw1.64.2.1Tribonema minus UTEX_B_3156 polypeptideContig_64 622348..622587 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Trimin1|128972|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_64:622348..622587- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
GGGCTACGAGTACGCGCACATGCGGCACGCGGTCTTCAGG
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protein sequence of jgi.p|Trimin1|128972

>Trimin1|128972|gw1.64.2.1 ID=Trimin1|128972|gw1.64.2.1|Name=jgi.p|Trimin1|128972|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
LTVARRTNFYGYHPDPQLFLRVELYNPRAVGEVASLLQAGVVLGQKLQPF
ESHISYLLQAFVDHGLAGYEYAHMRHAVFR
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mRNA from alignment at Contig_64:622348..622587-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Trimin1|128972|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_64:622348..622587- (Tribonema minus UTEX_B_3156 )
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
GGGCTACGAGTACGCGCACATGCGGCACGCGGTCTTCAGG
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Coding sequence (CDS) from alignment at Contig_64:622348..622587-

>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Trimin1|128972|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_64:622348..622587- (Tribonema minus UTEX_B_3156 )
CTGACGGTTGCGAGGCGCACCAACTTCTACGGCTATCACCCCGACCCGCA
GCTGTTCCTGCGCGTGGAGCTGTACAACCCCCGCGCCGTGGGGGAGGTGG
CGTCGCTGCTGCAGGCGGGGGTGGTGCTGGGTCAGAAGCTGCAGCCGTTC
GAGAGCCACATCAGCTACCTGCTGCAGGCGTTCGTGGACCACGGGCTGGC
GGGCTACGAGTACGCGCACATGCGGCACGCGGTCTTCAGG
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