mRNA_9955 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167669
Unique NamemRNA_9955
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A835YRP7_9STRA (Vasohibin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP7_9STRA)

HSP 1 Score: 414 bits (1063), Expect = 2.040e-146
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 
Query:    1 MQVAATTLQRPAYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVRSKLERAPQV 600
            MQVAATTLQRPAYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVRSKLERAPQV
Sbjct:    1 MQVAATTLQRPAYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVRSKLERAPQV 200
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: D8LKH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH4_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.760e-62
Identity = 90/160 (56.25%), Postives = 121/160 (75.62%), Query Frame = 1 
Query:   91 LRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 570
            +R KLK +Q YI + EYN+TG+ ++  KK RGF HV + A+ I+REALPIQCVEA F+GAYLT D+ +V+R+P+ F+S+L+G  +RHIVLAV SGGKWG+LG+SRRD L YKELKY     LV +F  +Y S WH+L+ +++G PLP + S N  I+WKV
Sbjct:    1 MRGKLKHIQSYITSLEYNYTGEAFFVKKKDRGFRHVTSTAKLIIREALPIQCVEAVFVGAYLTADMAEVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDKLMYKELKYDLFSKLVGDFRESYASSWHRLEQVWVGFPLPHDISSNVAIKWKV 160
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A6H5JJ50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ50_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.720e-49
Identity = 81/174 (46.55%), Postives = 110/174 (63.22%), Query Frame = 1 
Query:  139 YNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRD------------------------------VERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 570
            YN+TG+ ++  KK RGF HV + A+ I+REALPIQCVEA F+GAYLT D+ +                              V+R+P+ F+S+L+G  +RHIVLAV SGGKWG+LG+SRRD L YKELKY     LV +F  +Y S WH+L+ +++G PLP + S N  ++WKV
Sbjct:    5 YNYTGEAFFVKKKDRGFRHVTSTAKQIIREALPIQCVEAVFVGAYLTADMAEAGPLFFQTLADSSTLSPYLRRFLLPGYMVGVDRFPVCFRSSLDGRVYRHIVLAVRSGGKWGSLGLSRRDTLMYKELKYELFSKLVGDFRESYASNWHRLEQVWVGFPLPHDISSNVAVKWKV 178
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A7S4A8E0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8E0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.910e-47
Identity = 91/179 (50.84%), Postives = 116/179 (64.80%), Query Frame = 1 
Query:   43 PPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVE-RYPLSFKSALEGHEHRHIVLAV--TSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 570
            PP+P+ P +L +G    + KL+ L +YI AFEYNHTGK Y+   + RG  HV   A++I+REALPIQCVEA FL  +LT +L  ++ R PLSFKS      +RHIVLAV   S GKWG+LGISRR  LA+KE  + SL  LV +F  +Y  C H L  +YLGLP P       PI+W+V
Sbjct:   32 PPMPKRP-NLKSGTT--KSKLQALSRYIHAFEYNHTGKSYFKMSRDRGLKHVHFTAREIIREALPIQCVEAVFLAVHLTAELECLDLRVPLSFKSKCGEAHYRHIVLAVRDASTGKWGSLGISRRKVLAFKEPTFESLSTLVLDFQLSYKQCDHDLVKVYLGLPFPSGLHSVDPIKWRV 207
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: UPI001EB00973 (tubulinyl-Tyr carboxypeptidase 1-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB00973)

HSP 1 Score: 163 bits (412), Expect = 2.300e-45
Identity = 77/185 (41.62%), Postives = 121/185 (65.41%), Query Frame = 1 
Query:   46 PVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVR----SKLER 588
            P P+ P S +   +P+ D+++++Q Y+   +YNHTG  ++  +K R  + +   A++++RE+LPI+C+EA  LG YLT  +  VERYP+SFKS  +G  HRH+VL ++ GG++GA+G+SRR+ L YK L + SL  LV +F  AYT  WH+++ + +GLP P +P     ++WK      SKL R
Sbjct:  109 PAPQAPLSFSPT-VPIGDRVEKIQNYMTELQYNHTGTQFFEIRKNRPISGLMECAKEMIRESLPIKCLEAVILGIYLTNGMMGVERYPISFKSTFQGSVHRHVVLGISHGGRYGAIGMSRREDLMYKPLVFKSLSDLVFDFEKAYTKYWHEVRKVKVGLPSPHDPHSYETVQWKTLTLNVSKLSR 292
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A7S2GDE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GDE6_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.810e-44
Identity = 76/151 (50.33%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:   16 TTLQRPAYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEF 468
            T+L  PA+    P PP     G  P+  +L+ +Q+YI++ EYNHTG  YY  ++ RG  HV   A++I+REALPIQCVEA F+  +LT  + D+ R P+SFKS  +G+ +RHIVLAV  G KWGALGISRRD L +K+L++SSL  L+  F
Sbjct:   32 TSLPTPAF----PHPPAIGRDGNAPMASRLRAIQQYIKSLEYNHTGTSYYKLRRDRGLQHVILTAKEIVREALPIQCVEAVFVATHLTTGMADLLRIPISFKSTADGNTYRHIVLAVRYGDKWGALGISRRDSLMWKDLQFSSLAELIKNF 178
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: UPI001E1DEAA7 (tubulinyl-Tyr carboxypeptidase 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEAA7)

HSP 1 Score: 158 bits (399), Expect = 2.060e-44
Identity = 74/176 (42.05%), Postives = 116/176 (65.91%), Query Frame = 1 
Query:   46 PVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVR 573
            PVP+ P S +   L + ++L+++Q Y+   +YNHTG  ++  KK R  + +  VA+D++RE+LPI+C+EA  LG +LT  +  +ER+P+SFK+    + HRH+VL V   G++GALG+SRRD L YK L Y +L  L+ ++  AY   WH ++ I +GLP+P +P     I+WKV+
Sbjct:  109 PVPQAPMSFSPS-LSILERLEKIQNYMNTLQYNHTGTQFFEIKKNRPISGLMEVAKDMIRESLPIKCLEAIILGVFLTNGMMGMERFPISFKTQFNTNIHRHVVLGVYHAGRYGALGMSRRDDLMYKPLIYKTLSELIIDYERAYKKYWHDVKKIKIGLPIPHDPHSYEFIQWKVK 283
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: UPI001B8880F6 (tubulinyl-Tyr carboxypeptidase 1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8880F6)

HSP 1 Score: 157 bits (397), Expect = 1.700e-43
Identity = 74/172 (43.02%), Postives = 113/172 (65.70%), Query Frame = 1 
Query:   52 PEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWK 567
            P PP S     + + +KL+++Q Y++A +YNHTG  ++  KK R  + +   A+D++REALPI+C+EA  LG +LT  +  +ERYP+SFK+   G  HRH+VL V  GG++GALG+SRR+ L YK L++ SL  +V +F  AY++ WH L+ + +G P+  +P     I WK
Sbjct:   71 PSPPLSFQ-ALVSIEEKLEKIQNYMKALQYNHTGTQFFEIKKNRPLSGLMECAKDMIREALPIKCLEAIVLGVFLTNGMMGLERYPISFKTTFNGSTHRHVVLGVQYGGRYGALGMSRREDLMYKPLEFRSLADIVFDFQKAYSNYWHVLKKVKIGFPVSHDPHSFEVINWK 241
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A2D4BXV4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV4_PYTIN)

HSP 1 Score: 159 bits (401), Expect = 2.020e-43
Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 1 
Query:   34 AYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKV 570
            A  PP+P+ P    T + P++ +L  +Q Y+ + EYN+TG  Y+   K R F  + N A++I  E LPIQC+EA FL AY+T +  D+ER+PLSFKS      HRHIVLAV    KWGALG+SR + L YKEL+++SL  L  +F   + S  H +  +++G P P +   +  + W+V
Sbjct:   25 ACRPPMPKLPSF--TSKTPIKTRLMAVQNYLNSLEYNYTGTLYFDVNKNRSFKSIVNTAKEIAAEMLPIQCLEAVFLAAYITANFPDLERFPLSFKSQAGNSVHRHIVLAVRHQNKWGALGLSRSERLMYKELRFNSLSELTQDFCHGFESVCHVVTKLHVGFPFPHDIHSSEKVEWRV 201
[Close]
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Match: A0A667Y1H9_9TELE (Vasohibin 1 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y1H9_9TELE)

HSP 1 Score: 150 bits (380), Expect = 5.540e-42
Identity = 78/174 (44.83%), Postives = 109/174 (62.64%), Query Frame = 1 
Query:   46 PVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHTGKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVERYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLGALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWK 567
            PVP  P    T  +P R  L+ +QKYI   +YNHTG  ++  KK R    + ++A+++ REALPI+C+EA  LG YLT ++  VER+PLSFK+   G+   HIVL V SGG++GALGISRR+ L +K L++ +L  LV EF  AY   WH L+ + +G  +  +P     I WK
Sbjct:   10 PVPSVPTYQPTTTIPQR--LEAIQKYIRDLQYNHTGTQFFEIKKSRPLTALMDIAKEMTREALPIKCLEAVILGIYLTNNMPGVERFPLSFKTQFSGNHFHHIVLGVHSGGRFGALGISRREDLMFKPLEFRTLMDLVQEFDGAYRGYWHTLRKVKIGQYVSHDPHSVEQIEWK 181
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRP7_9STRA2.040e-146100.00Vasohibin-domain-containing protein n=1 Tax=Tribon... [more]
D8LKH4_ECTSI7.760e-6256.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ50_9PHAE3.720e-4946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A8E0_9STRA4.910e-4750.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI001EB009732.300e-4541.62tubulinyl-Tyr carboxypeptidase 1-like n=2 Tax=Hali... [more]
A0A7S2GDE6_9STRA1.810e-4450.33Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
UPI001E1DEAA72.060e-4442.05tubulinyl-Tyr carboxypeptidase 1-like n=1 Tax=Merc... [more]
UPI001B8880F61.700e-4343.02tubulinyl-Tyr carboxypeptidase 1-like n=1 Tax=Giga... [more]
A0A2D4BXV4_PYTIN2.020e-4342.46Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A667Y1H9_9TELE5.540e-4244.83Vasohibin 1 n=1 Tax=Myripristis murdjan TaxID=5868... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:488571..492216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167669|e_gw1.52.82.1
GOsGO:0000003,GO:0000768,GO:0001525,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001936,GO:0001937,GO:0001938,GO:0001944,GO:0003006,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006949,GO:0006950,GO:0007275,GO:0008150,GO:0008284,GO:0008285,GO:0009611,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010468,GO:0010594,GO:0010596,GO:0010604,GO:0010628,GO:0010632,GO:0010633,GO:0012505,GO:0016043,GO:0016525,GO:0019222,GO:0022414,GO:0022603,GO:0030334,GO:0030336,GO:0032501,GO:0032502,GO:0032879,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043535,GO:0043537,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045026,GO:0045177,GO:0045765,GO:0045766,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050678,GO:0050679,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051271,GO:0060255,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061025,GO:0061458,GO:0065007,GO:0071840,GO:0072358,GO:0072359,GO:0080134,GO:0080135,GO:0090342,GO:1901342,GO:1901343,GO:1901490,GO:1901491,GO:1904018,GO:2000026,GO:2000145,GO:2000146,GO:2000181,GO:2000772
Preferred nameVASH1
Descriptionnegative regulation of lymphangiogenesis
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2BW4P@1|root,2QPPX@2759|Eukaryota
Evalue1.27e-62
Seed ortholog2880.D8LKH4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVasohibin
Ec32 orthologEc-16_002970.1
TranscriptId167991
TrackFilteredModels1
ProteinId167669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167669gene_9955Tribonema minus UTEX_B_3156 geneContig_52 488571..492216 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9955_1exon_9955_1Tribonema minus UTEX_B_3156 exonContig_52 488571..488707 +
exon_9955_2exon_9955_2Tribonema minus UTEX_B_3156 exonContig_52 488921..489035 +
exon_9955_3exon_9955_3Tribonema minus UTEX_B_3156 exonContig_52 490649..490809 +
exon_9955_4exon_9955_4Tribonema minus UTEX_B_3156 exonContig_52 492027..492216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9955CDS_9955Tribonema minus UTEX_B_3156 CDSContig_52 488571..488707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167669Trimin1|167669|e_gw1.52.82.1Tribonema minus UTEX_B_3156 polypeptideContig_52 488571..492216 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9955 ID=mRNA_9955|Name=jgi.p|Trimin1|167669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_52:488571..492216+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTGGCAGCGACGACCTTGCAAAGGCCAGCGTATTATCCTCCTGT
GCCAGAACCACCGTGCTCGCTTGCTACAGGCCGGTTGCCACTCCGGGACA
AGCTCAAGCAGCTGCAGAAGTACATCGAGGCCTTCGAGTACAACCACACC
GGCAAATGCTACTATTCGACGAAGAAGTTCCGAGGCTTCGCGCATGTCGC
CAACGTGGCGCAGGACATCATGAGGGAGGCTTTGCCTATACAGTGTGTTG
AGGCGACGTTCCTGGGGGCGTACCTGACGTGTGACCTGCGCGACGTCGAG
CGCTACCCCCTGAGCTTCAAGAGCGCGCTGGAGGGCCACGAGCACAGGCA
CATCGTTCTCGCGGTCACGAGTGGCGGCAAGTGGGGGGCGCTGGGCATCA
GCAGAAGAGACTGTTTGGCATACAAGGAGTTGAAGTACTCCTCCCTTGGG
GCACTGGTGGCTGAATTTGCTGCGGCATACACGTCCTGCTGGCACCAGTT
GCAAGCCATATATCTGGGATTGCCGCTGCCGAGGAACCCCTCATGTAATG
CGCCCATCAGGTGGAAGGTGAGGTCCAAGCTTGAGCGGGCACCACAAGTA
TGA
back to top

protein sequence of jgi.p|Trimin1|167669

>Trimin1|167669|e_gw1.52.82.1 ID=Trimin1|167669|e_gw1.52.82.1|Name=jgi.p|Trimin1|167669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=201bp
MQVAATTLQRPAYYPPVPEPPCSLATGRLPLRDKLKQLQKYIEAFEYNHT
GKCYYSTKKFRGFAHVANVAQDIMREALPIQCVEATFLGAYLTCDLRDVE
RYPLSFKSALEGHEHRHIVLAVTSGGKWGALGISRRDCLAYKELKYSSLG
ALVAEFAAAYTSCWHQLQAIYLGLPLPRNPSCNAPIRWKVRSKLERAPQV
*
back to top

mRNA from alignment at Contig_52:488571..492216+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9955 ID=mRNA_9955|Name=jgi.p|Trimin1|167669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3646bp|location=Sequence derived from alignment at Contig_52:488571..492216+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGGCAGCGACGACCTTGCAAAGGCCAGCGTATTATCCTCCTGT
GCCAGAACCACCGTGCTCGCTTGCTACAGGCCGGTTGCCACTCCGGGACA
AGCTCAAGCAGCTGCAGAAGTACATCGAGGCCTTCGAGTGAGTGTGCGCT
GTCGAGTCGTCGTGCTGTCAATGCCGACACGCATGATAGTGCTCAGTATA
GTACCCTGGCTGCATTGCAAAGCGCCATTTCTTGTTGTGGTGCGTACTGC
ACTGATACGCCGACGTGTTCTCCACCGACAGTCCACGTACAGCTTGCCGT
GTGTGCCTGCCTGCATTTTTGACCCTGAGCTGCACTGAACTTCCACGCAG
GTACAACCACACCGGCAAATGCTACTATTCGACGAAGAAGTTCCGAGGCT
TCGCGCATGTCGCCAACGTGGCGCAGGACATCATGAGGGAGGCTTTGCCT
ATACAGTGTGTTGAGGTGAGGTGTACTTTTTATTAATTCTCGCTCACGGC
GCGAAAAAGCCCTGATGAATGATATCTAACTTGAAGCTTGCTGTACGCAA
TCTACGTTTCATGTGACAGTCTGAAAGTGTCTCAATGACAACCACTCAAA
CGACGCCGCCGCCAAGGTGTACTTTTATGGGAAGAGACGTTAGATCGTGC
AAGGGTCCCGGGCAGCAACAGCCATGCGCAGCATGAGCATCCAAAGACAT
ATGTTTTGACTGCAAGTATCCTGTAATGTCCACCACAACCTGGCTCACAT
TAATCCCCTCCGCACAGCCCTCCCCCCAGTGTACCTGAACATCAATGCTC
GGGCTACCACTTATACGCTGCAGTAGCAGCTGCATCTGTGTTCAGACACA
GAAGTATGCAGAAGCACTGCTCTCAGCATTGCGAGCGTCTTGACGTGGTC
TCAAGAGCACCGGTCTGTGTTGCACCGTGCCCACCGCTGCAAAAAAAGTG
CTTGTGCGCTGCACTCCAACATCGGCGAGCAGGCGCTCAAAGTGCGTCGC
ATGCATCCGGCTGCGCGGCCGGCCCCGACATCGGTTTTCCTGTGAAAACG
CCATGATGAGCTATGCGAGGTCGTACAAGGAAGACGGCGGTGCGGTGCGT
TGGCATGAGGGCAATGCCACATTTTTACGCGAATGGCCCATACTTGAGTG
CATTCGAAGTGCAATGGCCGGCCGTCTGCGCATACATGCGCGCCTTCAAA
TGGCGAGGTCGAGACACGCATGCACATGTTGGCGACTTCCAGCCCGTCAC
GCATGCTCCGCCAGCCACCGCGTCTAGGTGAAATCCTGTACGCGTGCCAG
TTGGTGCACACTGGTTTTAATCTGCAGCAGGTGGAGGTTGTACACGGTTT
GACTGAGGCTACGTTCGCATGCATGCTGTTGTGCCCCTCTTGCTTTTGCT
GCTGCGGGTCCACAAGTGACCCAGCCACAGTGACGCTTGCAGTGGTGAGT
CAGCTTTGATGAGCGCTGCTCTTGGTGCGTGCGTCGCAGCCACAAGGTCC
CATCCACTAGTCACAATGTTTCTCAACGGCTCCGCCGACAGACAAAATCG
TAGAAGTGGCAGACATACAAGTGTACAGCTGCGATGCCTAGCAGCGTGCT
GTCACCAGGCCTCCTGAGGAGCTAGCCGTGCCAGCAGCAAGCACACAGTA
CCCAGTAAGATTATGGCTGTGCCTGCACTGTGCCACACGAGACCCATGCG
GGCTCTCCTGCGAGCGTCCTGAGCCATGCATTTTTGACAGTAGAGGAGCC
GTGACGGGCGTGCCCGTACCCTTGCCATCAGCGTGCCCGGCACGCCCTGC
GAGAGCGGCAAAAACCCACATCTCCTACTGTGATGACGACTCCGCGTGGC
CCCCCGACACACTTCTGCCAGTATGCCCTGCCATCCTTCCAAACGTGTGA
TTTGCGTGATCCCAACCCAAACGCGTCTATTGCACGCGTTAGTAGACTCA
CACCGCACGTTGGGAGACCCTGCGTACGGGCCATGAGACACAAGTGCATC
GTGGTGACGCTCCTTCCGCCGCTTCTTCAACTTGCAACTCCGTTCCGCCG
CTTCTTCAACTTGCAATCCCTGATGCAGGCGACGTTCCTGGGGGCGTACC
TGACGTGTGACCTGCGCGACGTCGAGCGCTACCCCCTGAGCTTCAAGAGC
GCGCTGGAGGGCCACGAGCACAGGCACATCGTTCTCGCGGTCACGAGTGG
CGGCAAGTGGGGGGCGCTGGGCATCAGCAGAAGAGACTGGTGAGGTGTCA
AGAAACTGACACTGCAAAGTACCCTTGTGTAAGAAAATCATCGGTTGTAT
CTGGCTCTCTCACATCAGGGGCCGCGAGGCACATGAACATCGTACTGGCG
GTCACGTGCAGCGGCTGGGGCGATGGGCATTAGCAGCAGGAGGCCCATTG
AAATGTCAAGACACCATTTAGCAGACCTGCCGCTGTTGCCAAAACTGCCC
AAGTTGTGCAGACTGCCGCCTGACATGTAAACCCAGCGTCACCGCTGACG
CTCAGAGCTGGAGAAACGGTTACTCCATGAACCTGCACCATGTCCTACAC
TATTGTACTTCTATTGCGTATGCAGCACATGCAGGCACTCGAGGCGCCTC
ACGTGAGCTTTTCTAGTTGCTGTGCCCGTAGCGGTCGATGACAAAGCCAT
CACTGACCGCAAAACCTCACGATGACCGCAGCCGACCATACTGTGCAGTA
TCACACTTTCATTGTTTTTCAATTATTTAAAAAAAAATTAAATATCTACA
ATTATAATCCCATTGTGATGTGATGCAGACCAAAAATGTGTACTTTGTGT
TGCACGCTGTTTTGTAGCAAAGCATATGTGTCGGCAGTCACAGGCGGCAC
ACCTCTTGCTCGGCATGTGCACCGCCTTCAGACACGATTGTCTACAGTCA
CAACAGCGGTGTCACACAGTCACGCAGGGCATCGTTTGGTTATGATGAAT
AGTATGCTCTGAGGCACCTTGCTCAAACTCCGTGCTTTCCGTGGAGGCCT
GCGCTGTAAGTTTTTTTTTCATGAAAGATGTGTGGGCTGAACTTCATACT
TGCCGCGTCTGCTTCAAAAGTATGAATACTGTTGAAGCTGAAATCAACAG
ATATGCATTCCAGCACTCTGGCATTCAGGCAGACACCCTCATATGTACGT
ATGGACTTGTATTTATAAAGGCCCAAGGGAGGCCGGGTTGCCTATGCAAT
CGAAAAGCTTGCGTCAACGCAGCAGCCTAGTCTGCGCTGTGCCCTAGGAG
CTTGGATACCGGCGCTGCAACACAGCCCAGCATTCGCGCTCCACGTGTGT
ACGCCATGACGCGCTCCGCCAACTCCCGCGCCAGCGATATGCTCAGCTCA
ATGAGGATCTGACGCTTAGCTAACCCGGCCTTGCGTAGCACATCTGCCTT
CCCCCCCCCTGAGCACAGTGCTAAGTGCATTGTACTGTGACGCTCTTGTG
TTGCAGTTTGGCATACAAGGAGTTGAAGTACTCCTCCCTTGGGGCACTGG
TGGCTGAATTTGCTGCGGCATACACGTCCTGCTGGCACCAGTTGCAAGCC
ATATATCTGGGATTGCCGCTGCCGAGGAACCCCTCATGTAATGCGCCCAT
CAGGTGGAAGGTGAGGTCCAAGCTTGAGCGGGCACCACAAGTATGA
back to top

Coding sequence (CDS) from alignment at Contig_52:488571..492216+

>mRNA_9955 ID=mRNA_9955|Name=jgi.p|Trimin1|167669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=603bp|location=Sequence derived from alignment at Contig_52:488571..492216+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTGGCAGCGACGACCTTGCAAAGGCCAGCGTATTATCCTCCTGT
GCCAGAACCACCGTGCTCGCTTGCTACAGGCCGGTTGCCACTCCGGGACA
AGCTCAAGCAGCTGCAGAAGTACATCGAGGCCTTCGAGTACAACCACACC
GGCAAATGCTACTATTCGACGAAGAAGTTCCGAGGCTTCGCGCATGTCGC
CAACGTGGCGCAGGACATCATGAGGGAGGCTTTGCCTATACAGTGTGTTG
AGGCGACGTTCCTGGGGGCGTACCTGACGTGTGACCTGCGCGACGTCGAG
CGCTACCCCCTGAGCTTCAAGAGCGCGCTGGAGGGCCACGAGCACAGGCA
CATCGTTCTCGCGGTCACGAGTGGCGGCAAGTGGGGGGCGCTGGGCATCA
GCAGAAGAGACTGTTTGGCATACAAGGAGTTGAAGTACTCCTCCCTTGGG
GCACTGGTGGCTGAATTTGCTGCGGCATACACGTCCTGCTGGCACCAGTT
GCAAGCCATATATCTGGGATTGCCGCTGCCGAGGAACCCCTCATGTAATG
CGCCCATCAGGTGGAAGGTGAGGTCCAAGCTTGAGCGGGCACCACAAGTA
TGA
back to top