mRNA_9916 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167652
Unique NamemRNA_9916
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167652 vs. uniprot
Match: A0A835YSS0_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS0_9STRA)

HSP 1 Score: 310 bits (794), Expect = 6.030e-107
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 MSTALRTLGAALGVALFRRLIWRPWGERRRKKKLQKILKAGVRAIEKDPDILNLQLNIAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRIRRQRAAMDAYGY 459
            MSTALRTLGAALGVALFRRLIWRPWGERRRKKKLQKILKAGVRAIEKDPDILNLQLNIAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRIRRQRAAMDAYGY
Sbjct:    1 MSTALRTLGAALGVALFRRLIWRPWGERRRKKKLQKILKAGVRAIEKDPDILNLQLNIAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRIRRQRAAMDAYGY 153
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BLAST of jgi.p|Trimin1|167652 vs. uniprot
Match: A0A835Z5A9_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.820e-13
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  172 IAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMD 417
            I + +  L+   +  R WE  L+ LPD + D  I+  EF  YM  YK++H EL D DLP + +MD +R G ITF+EW  + D
Sbjct:   97 IQQEQARLEILHDNIRMWETALFTLPDDDGDKLITPNEFSTYMTSYKKLHPELLDSDLPTFRDMDFNRNGQITFEEWAKFQD 178
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BLAST of jgi.p|Trimin1|167652 vs. uniprot
Match: A0A836CPR7_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.370e-11
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  118 AGVRAIEKDPDILNLQLNIAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYMARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRIRRQRA 438
            A + A+ +D ++   +L  A     +D +   A E +   +  PD N D RISR EF+ Y+A Y R +  LR  D+P++E+ D+ R G + F+EW  Y++R R++ A
Sbjct:  116 ANLEALVEDAELRIEELQQAAVDAGMDISATQA-EVDYEEFKQPDANHDNRISRAEFNAYIADYLRQYPHLRREDMPKFEDFDSSRDGSVNFKEWQMYLERQRKEDA 221
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167652 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YSS0_9STRA6.030e-107100.00EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z5A9_9STRA5.820e-1341.46EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CPR7_9STRA9.370e-1134.58EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:111234..114056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167652|e_gw1.52.74.1
DescriptionEF-hand domain pair
COG categoryZ
Max annot lvl2836|Bacillariophyta
EggNOG OGs2E463@1|root,2SB4A@2759|Eukaryota,2XC32@2836|Bacillariophyta
Evalue1.73e-07
Seed ortholog35128.Thaps2171
Hectar predicted targeting categorymitochondrion
TranscriptId167974
TrackFilteredModels1
ProteinId167652
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167652gene_9916Tribonema minus UTEX_B_3156 geneContig_52 111234..114056 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9916_1exon_9916_1Tribonema minus UTEX_B_3156 exonContig_52 111234..111410 +
exon_9916_2exon_9916_2Tribonema minus UTEX_B_3156 exonContig_52 112501..112736 +
exon_9916_3exon_9916_3Tribonema minus UTEX_B_3156 exonContig_52 114008..114056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9916CDS_9916Tribonema minus UTEX_B_3156 CDSContig_52 111234..111410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167652Trimin1|167652|e_gw1.52.74.1Tribonema minus UTEX_B_3156 polypeptideContig_52 111234..114056 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9916 ID=mRNA_9916|Name=jgi.p|Trimin1|167652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_52:111234..114056+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACGGCGCTGAGGACGCTAGGCGCGGCGCTGGGGGTGGCGCTGTT
CAGGCGGCTGATCTGGCGGCCGTGGGGCGAGCGGCGCCGCAAGAAGAAGC
TGCAGAAGATCCTCAAGGCGGGCGTGCGCGCGATCGAGAAGGACCCGGAC
ATCCTGAATCTGCAGCTCAACATTGCGGAGAACAAGCGCATGCTCGACAG
CACGCTGGAGGTGGCGCGCGAGTGGGAGAAGCGCCTGTACGCGCTGCCCG
ACCGCAACGCCGACGGGCGCATCTCGCGGCCCGAGTTCGACGACTACATG
GCGCGCTACAAGCGCATGCACACGGAGCTGCGCGACCCGGACCTCCCGCG
CTGGGAGGAGATGGACACGGACCGCACGGGGTTCATTACCTTCCAGGAGT
GGCTCGACTACATGGACCGGATTCGCCGGCAGCGCGCGGCGATGGACGCC
TACGGGTACTAA
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protein sequence of jgi.p|Trimin1|167652

>Trimin1|167652|e_gw1.52.74.1 ID=Trimin1|167652|e_gw1.52.74.1|Name=jgi.p|Trimin1|167652|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MSTALRTLGAALGVALFRRLIWRPWGERRRKKKLQKILKAGVRAIEKDPD
ILNLQLNIAENKRMLDSTLEVAREWEKRLYALPDRNADGRISRPEFDDYM
ARYKRMHTELRDPDLPRWEEMDTDRTGFITFQEWLDYMDRIRRQRAAMDA
YGY*
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mRNA from alignment at Contig_52:111234..114056+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9916 ID=mRNA_9916|Name=jgi.p|Trimin1|167652|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2823bp|location=Sequence derived from alignment at Contig_52:111234..114056+ (Tribonema minus UTEX_B_3156 )
ATGTCCACGGCGCTGAGGACGCTAGGCGCGGCGCTGGGGGTGGCGCTGTT
CAGGCGGCTGATCTGGCGGCCGTGGGGCGAGCGGCGCCGCAAGAAGAAGC
TGCAGAAGATCCTCAAGGCGGGCGTGCGCGCGATCGAGAAGGACCCGGAC
ATCCTGAATCTGCAGCTCAACATTGCGGTGAGCGCAGCGCGTTTTGATGT
ACAGGCCCGGCGCATTCATCGTGCCGCATGCCGTGTGTAGGGCATGTATG
TATGTATGTATGTATGTTGTGAGGAGCGCGAGGTTTACCGCGAGCAGGCG
TTTTGAATCTGGACCTGCAGCTCAACATTGCGGTGAGCGCCCGCGCACGC
GCTGCTGAGGCTGTGAGGGTCTGGCGCATTCACCATGCTGCGTGCCGTAT
GTAGGGCGTGTAGGTAGCGTGGTGGGGAGCTCAGAGCATACCCGGGGAGG
CATGCTACAGCTGCAGCTTCATTTACCGTGCTGCATGCCGCATGTAGGGC
ATGTATGTATGTTGCGAGGAGCTCAGAGTGTAGCCCGGGGGGTGCGCTAC
AGCTGCAGCTCAATGTGTTGTGGTCAGTTCCTCAATGTACATATTGGCAT
TTGTTTGTTTGATGAGAGCGGCACGGGTATGTGCGTTATGATACGCGCCA
ACTCAATCTGCAGCTCAAAAGTATTGCGGCGAGCGCCGTGTGCCGAACGT
AACCGAATGTGACAGCGGGACAGTGTATTTTGAGTGGGGCACGCGACTGC
ACTGCAGTTCGTGTTGGTCTTCAGAATGACATGCGGTCTCAGTCATTGCA
GCTCGTGTTGGGCTTCAGAGTGAAATGCGGCATCAGTCCGGCATGGCATG
GTTTGTGCATGCACGCTTGAAGTTATCTCATGCACCTGAAGTTTTTGCAG
TAATTCGTATTTACATCAGTCAGCTGATACAGCTTCTCGAGGCGAATGGA
TTTGCTGCTGCGAAGGGCCAGGTCATGCCAAACCTTCAACTCTTCGCTGC
TTCCAGACTTATATTGAAGTTCAAGTAACAACGAGAGCGGAGTGAGACCA
CACTCAGACCTGTGCTCCCAGCACCTCGTCGTGAGCACACGCCTGTTAAT
GTATGCCTCAACGGCGGCCGTCATAGCGTGAAGGCGAGCGCGAACACCGG
GTCTCAATCGCCAGTTAAGCATTGCAATACCTCTTTTGGTTGAAGTAGTC
GCAGATGACCGACTGTGTGTGTGTGTGTGTACAGTGGTGTCGCTTGCTGC
ACGTCTCCACGCCTCAGGAGAACAAGCGCATGCTCGACAGCACGCTGGAG
GTGGCGCGCGAGTGGGAGAAGCGCCTGTACGCGCTGCCCGACCGCAACGC
CGACGGGCGCATCTCGCGGCCCGAGTTCGACGACTACATGGCGCGCTACA
AGCGCATGCACACGGAGCTGCGCGACCCGGACCTCCCGCGCTGGGAGGAG
ATGGACACGGACCGCACGGGGTTCATTACCTTCCAGGAGTGGCTCGACTA
CATGTGAGTGGCTGAAAAAGCTCTAAAATTAGGGTTAGGGTAATGTAGGG
TACGGGTAAGCAGGGGTTAGGGTTGGAGCTGCGCGACTCGGAGCCTGTTC
TCGCTGGGGGAGGAGGTTAGACACGGACCGCACGGGTTGCATCACCTTCC
AGGAGTGGCTCGACTACATGTGAGTTTCCAGGGTTGAAGATAGGGTTAGG
GTACGCTAGGCTCAGTCAGAAATACTTCAGGCTGCGCGACTCAGAAGCTG
CGGCGCTGGTAGGAGATGGACACGGACCGCACGGGTTTCATCACCTTCCA
GGAGTGGCTCGACTACATGTGAGTGAGGTCGGAGGCTTGTAGGGTTAGGG
TCAGAGTTGGGAGTAAGTGGGTTAGGGTTAGGGCTGGGAGGAGATGGACA
CGGACCGCACGGGGTTCATTACATTTCAGGAGTGGCTCGACTACATGTGC
GTCAGCATGCTTCTAGGGCCAAAGTTAGGGCTAGGGCTAAGGTCAGGGTG
TAGAGGTGGAGGTCAGAGGAGGGGCTCATAGCACCTCTTCAGACTACATG
GCGCGGCTCGGCGCCTCAGGGTCGGGGGCAATGGTCAACTCCAGGTGCAC
GTGGTGTGGTCTTTGACGGCCCGATGTGAAGGCGTCCGCCTCAGCGCCGT
CGCTGCCTTTGGGTCTTGGGCACACGGGCATGCACGCGCCATGTGCGGCG
CATGCTTACAGCGCTGGCAATGTGAGTACATATTGCTGATTCAAGCGTCA
ATCTGTTGTGCTGAAACAGCGTCTCATGCTATGCAAATCTGGGCCAGCCA
TCCCCCCCCCTGTCACTGCCGCCAACCCGTGCGTGCGCCCATCGCTGCGT
GATCGCGCGCGCGACTTCCCAGTTGATGGCTTTCGTGTCTGGCCGCTCGT
GCCGACTAGACCTGCTGAAGCCAACACGTATACATACCTACGTATATCAC
CTGACATCCACGCCATCCTTGAACTGGTCAATGGCGCCGTATACAGCGCG
ACTCACCGTGTGCGGCACATACATACATTACCCCCCCCCCCCCACCCCCT
TGTCACTGCCGCTGCCCACGCACGCGCCCGCCGCTGCGCGATCGCACGTG
CGTGACTCCCCAGGCGATGTACGTGTACAGACCTGCTGAAGTCAACTGTA
AACCTACCTACGTACATTGCCTGACATGCACGCCATCTTTAAGCCTGGTC
AACTGCAGTGTGTATACATATGTATACAGTGCGACTCACCGCCGTCACCG
TCTTCTGTCGGCGCGCGCGCGCAGGGACCGGATTCGCCGGCAGCGCGCGG
CGATGGACGCCTACGGGTACTAA
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Coding sequence (CDS) from alignment at Contig_52:111234..114056+

>mRNA_9916 ID=mRNA_9916|Name=jgi.p|Trimin1|167652|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_52:111234..114056+ (Tribonema minus UTEX_B_3156 )
ATGTCCACGGCGCTGAGGACGCTAGGCGCGGCGCTGGGGGTGGCGCTGTT
CAGGCGGCTGATCTGGCGGCCGTGGGGCGAGCGGCGCCGCAAGAAGAAGC
TGCAGAAGATCCTCAAGGCGGGCGTGCGCGCGATCGAGAAGGACCCGGAC
ATCCTGAATCTGCAGCTCAACATTGCGGAGAACAAGCGCATGCTCGACAG
CACGCTGGAGGTGGCGCGCGAGTGGGAGAAGCGCCTGTACGCGCTGCCCG
ACCGCAACGCCGACGGGCGCATCTCGCGGCCCGAGTTCGACGACTACATG
GCGCGCTACAAGCGCATGCACACGGAGCTGCGCGACCCGGACCTCCCGCG
CTGGGAGGAGATGGACACGGACCGCACGGGGTTCATTACCTTCCAGGAGT
GGCTCGACTACATGGACCGGATTCGCCGGCAGCGCGCGGCGATGGACGCC
TACGGGTACTAA
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