mRNA_9896 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|352742
Unique Name	mRNA_9896
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|352742 vs. uniprot
Match: A0A835ZFU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU2_9STRA)

HSP 1 Score: 460 bits (1184), Expect = 1.290e-162
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 3

Query:   63 MFGPLRLGLWLALSVIRVPLSVVLWVGEACLFGVSVVIDALKLILQTVPSVARLAFRAGCLSVWVAAVLGIYQLSYEEGGELMVMVRDVARHCAMFVCAARHLPVPWGVNGVSDSQLSRAWRMFALVHHPDKNGDSSIATFVCVQQALQMLKEHEGLMRLWVLARPLLAIPPWLAAPLAFAAACTLAHWWRPPLLLPSRCLPPRAAARTPRAPVPPVAMPIAQPHFLSSG 752
            MFGPLRLGLWLALSVIRVPLSVVLWVGEACLFGVSVVIDALKLILQTVPSVARLAFRAGCLSVWVAAVLGIYQLSYEEGGELMVMVRDVARHCAMFVCAARHLPVPWGVNGVSDSQLSRAWRMFALVHHPDKNGDSSIATFVCVQQALQMLKEHEGLMRLWVLARPLLAIPPWLAAPLAFAAACTLAHWWRPPLLLPSRCLPPRAAARTPRAPVPPVAMPIAQPHFLSSG
Sbjct:    1 MFGPLRLGLWLALSVIRVPLSVVLWVGEACLFGVSVVIDALKLILQTVPSVARLAFRAGCLSVWVAAVLGIYQLSYEEGGELMVMVRDVARHCAMFVCAARHLPVPWGVNGVSDSQLSRAWRMFALVHHPDKNGDSSIATFVCVQQALQMLKEHEGLMRLWVLARPLLAIPPWLAAPLAFAAACTLAHWWRPPLLLPSRCLPPRAAARTPRAPVPPVAMPIAQPHFLSSG 230

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352742 vs. uniprot

BLAST of jgi.p|Trimin1|352742 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZFU2_9STRA	1.290e-162	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_129	contig	Contig_129:418830..421100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|352742\|estExt_Genemark1.C_Ctg_1290066
Hectar predicted targeting category	signal peptide
TranscriptId	353064
Track	FilteredModels1
ProteinId	352742

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352742	gene_9896	Tribonema minus UTEX_B_3156	gene	Contig_129 418830..421100 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352742	Trimin1\|352742\|estExt_Genemark1.C_Ctg_1290066	Tribonema minus UTEX_B_3156	polypeptide	Contig_129 418892..420943 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9896_1	exon_9896_1	Tribonema minus UTEX_B_3156	exon	Contig_129 418830..419078 +
exon_9896_2	exon_9896_2	Tribonema minus UTEX_B_3156	exon	Contig_129 419203..419371 +
exon_9896_3	exon_9896_3	Tribonema minus UTEX_B_3156	exon	Contig_129 419585..419667 +
exon_9896_4	exon_9896_4	Tribonema minus UTEX_B_3156	exon	Contig_129 420187..420319 +
exon_9896_5	exon_9896_5	Tribonema minus UTEX_B_3156	exon	Contig_129 420823..421100 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_9896	UTR5_9896	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_129 418830..418891 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9896	CDS_9896	Tribonema minus UTEX_B_3156	CDS	Contig_129 418892..419078 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_9896	UTR3_9896	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_129 420944..421100 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_129:418830..421100+
coding sequence from alignment at Contig_129:418830..421100+

spliced messenger RNA

>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Trimin1|352742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=912bp|location=Sequence derived from alignment at Contig_129:418830..421100+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCAATCCGAGGCTCAAGTTGTTGCCGCCAAGAACATCAAAAGCTTCAGC
GCGGTGCGGTTTATGTTTGGGCCTCTGCGCTTGGGGCTATGGCTGGCGCT
GAGCGTCATTCGAGTGCCACTCAGTGTCGTGCTTTGGGTGGGGGAGGCTT
GCTTGTTTGGGGTGTCGGTGGTCATCGATGCCCTCAAATTGATCCTGCAG
ACGGTGCCTTCTGTTGCGAGGCTGGCCTTCAGGGCTGGATGCCTAAGTGT
CTGGGTTGCGGCGGTATTGGGGATCTACCAGCTGAGCTATGAGGAGGGCG
GAGAGCTGATGGTCATGGTGCGGGATGTGGCAAGACACTGCGCGATGTTT
GTGTGCGCGGCGCGGCACCTGCCTGTGCCATGGGGGGTCAATGGCGTATC
GGACTCGCAGCTGAGCAGGGCATGGCGGATGTTTGCTCTGGTTCACCATC
CAGACAAGAACGGAGATTCTTCTATTGCCACATTTGTGTGCGTTCAACAA
GCGCTGCAAATGCTCAAGGAGCACGAGGGGCTGATGCGCCTGTGGGTGCT
GGCGCGCCCCCTGCTGGCGATCCCCCCGTGGCTGGCCGCGCCGCTGGCGT
TCGCGGCGGCGTGCACGCTGGCGCACTGGTGGAGACCGCCGCTTCTCCTC
CCCAGTCGCTGCCTGCCGCCGCGCGCCGCGGCACGCACGCCGCGCGCGCC
CGTGCCCCCCGTGGCAATGCCCATAGCGCAGCCGCACTTCCTGTCCAGCG
GCTAGCGCGCCGCGTGCCGGGCATGGCGGCTTCGTGCGCACATCCCGGCT
TTCTACAGACTGTGACCGAGCGCCTTTGAGATATGGCGGTCTCGGCTGAT
GTACATACTAGCCCTTTGGCAGGGAGGCGATGTGAGATGGCGGGGGGAGG
GGGGGTGGGGGG

protein sequence of jgi.p|Trimin1|352742

>Trimin1|352742|estExt_Genemark1.C_Ctg_1290066 ID=Trimin1|352742|estExt_Genemark1.C_Ctg_1290066|Name=jgi.p|Trimin1|352742|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MFGPLRLGLWLALSVIRVPLSVVLWVGEACLFGVSVVIDALKLILQTVPS
VARLAFRAGCLSVWVAAVLGIYQLSYEEGGELMVMVRDVARHCAMFVCAA
RHLPVPWGVNGVSDSQLSRAWRMFALVHHPDKNGDSSIATFVCVQQALQM
LKEHEGLMRLWVLARPLLAIPPWLAAPLAFAAACTLAHWWRPPLLLPSRC
LPPRAAARTPRAPVPPVAMPIAQPHFLSSG*

mRNA from alignment at Contig_129:418830..421100+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Trimin1|352742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2271bp|location=Sequence derived from alignment at Contig_129:418830..421100+ (Tribonema minus UTEX_B_3156 )
GTCAATCCGAGGCTCAAGTTGTTGCCGCCAAGAACATCAAAAGCTTCAGC
GCGGTGCGGTTTATGTTTGGGCCTCTGCGCTTGGGGCTATGGCTGGCGCT
GAGCGTCATTCGAGTGCCACTCAGTGTCGTGCTTTGGGTGGGGGAGGCTT
GCTTGTTTGGGGTGTCGGTGGTCATCGATGCCCTCAAATTGATCCTGCAG
ACGGTGCCTTCTGTTGCGAGGCTGGCCTTCAGGGCTGGATGCCTAAGTGG
TGAGTGATATGCAGACACTGCAGTTGGCTTTGCTGATTGTTGCACTGCCT
GTCTGCTGGCCTTGTGCCCATCGATGGCTTGACAGTCGCTGTTTAACATG
ATGGGTTGACGTTCTGCCCGCAGTCTGGGTTGCGGCGGTATTGGGGATCT
ACCAGCTGAGCTATGAGGAGGGCGGAGAGCTGATGGTCATGGTGCGGGAT
GTGGCAAGACACTGCGCGATGTTTGTGTGCGCGGCGCGGCACCTGCCTGT
GCCATGGGGGGTCAATGGCGTATCGGACTCGCAGCTGAGCAGGTATGTGT
ATTGAAGTTGCTTTCAAGCGCCAGGTGCTCCTGATGATCCGCCATGTCCA
AGTTTGCGGTACACCTTGTAGAGCTACTCTATGGCCATTATTTTGGAATG
AATTTTATCACCAGCTGTAGCGCTGCAATGGCTGGTACTGCAACTGTCCC
GCATCAGTCCCAACTACTTGTTACAGCATGTTCCCAATCACCACGCGCTT
TGCAGGGCATGGCGGATGTTTGCTCTGGTTCACCATCCAGACAAGAACGG
AGATTCTTCTATTGCCACATTTGTGTGCGTTCAACAAGGTGAGCTTGCGA
GTGCCCGCAGTTACCTGCAAGCTGAATGAACACCAGCGACTTCTCTCGGT
TGTGGTCATCTGGCAGTCGATGCACAATGTCATGCAAGAGGGGAGGGAGG
ATGGCTGTGGATTCGCCGCAGATGACATGGCATACCCTGGCAGCAGTAGT
TCAGTTGGTTTTTCACCGACACCTTGCACCTTTCAGTCTGCTGCCACTGC
ATCATTGTGGCAAGCGCCGTTGTCAACAAGTCCTCGCCATCACCCCATTC
AACAACGCATTGCTGCAACGCACGTGCTGCTGCGGAGTCGCACGTTATCA
TGGATGCCGCAGCATGGCAGTGTCTGCCTCGCATTGCGCAGGGACCACCG
CAATCGTACACATAGCATACACATTGCATCCCGTAGCAGCCGGTCCCGGA
CTCTGTGCCAGCCGGGACAGCGCACCACGATGCATGCGCACCTGGCAGCG
TCGAAACACTCCGCTCTAACGTCAGTGCGCGCTGACGCCCTCGCCGTGAC
GTCGCAGCGCTGCAAATGCTCAAGGAGCACGAGGGGCTGATGCGCCTGTG
GGTGCTGGCGCGCCCCCTGCTGGCGATCCCCCCGTGGCTGGCCGCGCCGC
TGGCGTTCGCGGCGGCGTGCACGCTGGCGCACTGGTGGAGGTGCGTACGA
CGGGGCCCGCAGCTGCGCCCGCACGCACTGCACACGCGTCGGTCGCGGCC
GCCGCACACACACATCGTGCTGCCTGCAGCGCTCTGCTGCGAAGGTGCAG
CCTGCGCAATGTCTCTTTTGCATCAGCGTTGCTTGCGAGTGGGTATTGTT
GAGCGCTGTCCGCAGCCGTCGCGTGCCTTCCATCTGCTTTGTGCGCAGCG
GCGGCGTTACGCTACTGGCGCCAGCAGCCGCAGCGCAATCGCGAGGAGCG
CAAGTGTGTTGCGTGCACGGACGCCAGCGCGCCGCTGCACGTGCGTGTTC
CCGCCCACCATCTCAAGCGCACAGGCGCCGCGCACTGCGTCTCAGCTGTT
GCAGCGATACTGCATTGCGTGCAGAGCTGCAGCTGCAATGTCGTGTGCGA
CCAGTCACCATGCACCTCCCTTTTGTGCCTCGGCCATCTCACTGGTTCAT
CTCTGTCCTCCCCCGCGCTGCGCTGCCGCCGCCGCCGCCGCAGACCGCCG
CTTCTCCTCCCCAGTCGCTGCCTGCCGCCGCGCGCCGCGGCACGCACGCC
GCGCGCGCCCGTGCCCCCCGTGGCAATGCCCATAGCGCAGCCGCACTTCC
TGTCCAGCGGCTAGCGCGCCGCGTGCCGGGCATGGCGGCTTCGTGCGCAC
ATCCCGGCTTTCTACAGACTGTGACCGAGCGCCTTTGAGATATGGCGGTC
TCGGCTGATGTACATACTAGCCCTTTGGCAGGGAGGCGATGTGAGATGGC
GGGGGGAGGGGGGGTGGGGGG

Coding sequence (CDS) from alignment at Contig_129:418830..421100+

>mRNA_9896 ID=mRNA_9896|Name=jgi.p|Trimin1|352742|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_129:418830..421100+ (Tribonema minus UTEX_B_3156 )
ATGTTTGGGCCTCTGCGCTTGGGGCTATGGCTGGCGCTGAGCGTCATTCG
AGTGCCACTCAGTGTCGTGCTTTGGGTGGGGGAGGCTTGCTTGTTTGGGG
TGTCGGTGGTCATCGATGCCCTCAAATTGATCCTGCAGACGGTGCCTTCT
GTTGCGAGGCTGGCCTTCAGGGCTGGATGCCTAAGTGTCTGGGTTGCGGC
GGTATTGGGGATCTACCAGCTGAGCTATGAGGAGGGCGGAGAGCTGATGG
TCATGGTGCGGGATGTGGCAAGACACTGCGCGATGTTTGTGTGCGCGGCG
CGGCACCTGCCTGTGCCATGGGGGGTCAATGGCGTATCGGACTCGCAGCT
GAGCAGGGCATGGCGGATGTTTGCTCTGGTTCACCATCCAGACAAGAACG
GAGATTCTTCTATTGCCACATTTGTGTGCGTTCAACAAGCGCTGCAAATG
CTCAAGGAGCACGAGGGGCTGATGCGCCTGTGGGTGCTGGCGCGCCCCCT
GCTGGCGATCCCCCCGTGGCTGGCCGCGCCGCTGGCGTTCGCGGCGGCGT
GCACGCTGGCGCACTGGTGGAGACCGCCGCTTCTCCTCCCCAGTCGCTGC
CTGCCGCCGCGCGCCGCGGCACGCACGCCGCGCGCGCCCGTGCCCCCCGT
GGCAATGCCCATAGCGCAGCCGCACTTCCTGTCCAGCGGCTAG