mRNA_9879 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175760
Unique NamemRNA_9879
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A835ZK47_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK47_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.450e-57
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 MAADEHAPAEKDSKXXXXXXXXXVALECAAAAAAGDAPLFLAQEGAVEEGCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            MAADEHAPAEKDSKXXXXXXXXXVALECAAAAAAGDAPLFLAQEGAVEEGCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC
Sbjct:    1 MAADEHAPAEKDSKXXXXXXXXXVALECAAAAAAGDAPLFLAQEGAVEEGCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 93
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A482SB50_9ARCH (PHD-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB50_9ARCH)

HSP 1 Score: 73.9 bits (180), Expect = 4.510e-14
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  148 GCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            GC +CG  ++ D+ L+CD  CGRE H+YCL PPL D+PEG+W+C
Sbjct:   57 GCTVCGGIDNEDKILVCDKNCGRESHIYCLRPPLQDIPEGEWFC 100
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A7C8YIV8_OPUST (Histone acetyltransferase (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YIV8_OPUST)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-13
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  142 EEG-CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            +EG C +CGVD+D D  LLCD  C  E+H+YCL PPLA +PEG+WYC
Sbjct:  127 DEGVCKVCGVDKDDDSVLLCDA-CDAEYHMYCLCPPLARIPEGNWYC 172
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A6J0P9G9_ELAGV (methyl-CpG-binding domain-containing protein 9 n=6 Tax=Arecaceae TaxID=4710 RepID=A0A6J0P9G9_ELAGV)

HSP 1 Score: 74.3 bits (181), Expect = 1.750e-13
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  142 EEG-CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            EEG C +CG+D+D D  LLCD  C  E+H+YCL PPLA +PEG+WYC
Sbjct: 1291 EEGVCKVCGIDKDDDSVLLCD-KCDSEYHMYCLNPPLARIPEGNWYC 1336
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A7N2L079_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2L079_QUELO)

HSP 1 Score: 74.3 bits (181), Expect = 1.750e-13
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  142 EEGCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            EE C +CG+D D D  LLCD  C  E+H YCL+PPLA +PEG+WYC
Sbjct: 1314 EEVCRVCGIDRDDDSVLLCD-TCDAEYHTYCLDPPLARIPEGNWYC 1358
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A392PLC6_9FABA (Methyl-CpG-binding domain-containing protein 9-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PLC6_9FABA)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-13
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  142 EEG-CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            +EG C +CG+D D D  LLCD  C  E+H YCL PPLA +PEG+WYC
Sbjct:   77 DEGVCKVCGIDRDDDSVLLCD-KCDAEYHKYCLNPPLARIPEGNWYC 122
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A2D4C2C2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2C2_PYTIN)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-13
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  148 GCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            GCV+CG+D+D ++ LLCDG C  E+H+YCL PPL ++PEGD+YC
Sbjct:   15 GCVVCGLDQDANKILLCDG-CDAEYHIYCLIPPLHEIPEGDFYC 57
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: UPI001FB0B82B (methyl-CpG-binding domain-containing protein 9 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0B82B)

HSP 1 Score: 73.9 bits (180), Expect = 2.380e-13
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  100 AGDAPLFLAQEGAVEEG-CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            A D+PL    E   E+G C +CGVD+D D  LLCD  C  E+H YCL PPLA +P+G+WYC
Sbjct: 1180 ASDSPLI---EAPWEDGLCKVCGVDKDDDNVLLCDS-CDSEYHTYCLNPPLARIPDGNWYC 1236
[Close]
BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A1V9YPZ1_9STRA (PHD-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPZ1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.000e-13
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:  121 LAQEGAVEE------------GCVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            L +E AVEE            GC  C  +   ++ LLCD  CGRE+H+YCL PPL D+PEGDWYC
Sbjct:  345 LVKEDAVEEEDEAFPLGIEPIGCEKCHENNCHEKMLLCDNNCGREYHIYCLTPPLDDIPEGDWYC 409
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BLAST of jgi.p|Trimin1|175760 vs. uniprot
Match: A0A1Q3CEU3_CEPFO (Bromodomain domain-containing protein/PHD domain-containing protein/MBD domain-containing protein/FYRC domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CEU3_CEPFO)

HSP 1 Score: 73.6 bits (179), Expect = 3.250e-13
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  142 EEG-CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC 279
            EEG C +CGVD+D D  LLCD  C  E+H YCL PPLA +PEG+WYC
Sbjct: 1178 EEGVCKVCGVDKDDDNVLLCD-TCDSEYHTYCLNPPLARIPEGNWYC 1223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175760 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK47_9STRA2.450e-57100.00PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A482SB50_9ARCH4.510e-1456.82PHD-type domain-containing protein n=1 Tax=archaeo... [more]
A0A7C8YIV8_OPUST1.050e-1361.70Histone acetyltransferase (Fragment) n=2 Tax=Opunt... [more]
A0A6J0P9G9_ELAGV1.750e-1361.70methyl-CpG-binding domain-containing protein 9 n=6... [more]
A0A7N2L079_QUELO1.750e-1360.87Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
A0A392PLC6_9FABA2.340e-1359.57Methyl-CpG-binding domain-containing protein 9-lik... [more]
A0A2D4C2C2_PYTIN2.370e-1361.36Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
UPI001FB0B82B2.380e-1354.10methyl-CpG-binding domain-containing protein 9 n=1... [more]
A0A1V9YPZ1_9STRA3.000e-1349.23PHD-type domain-containing protein n=1 Tax=Achlya ... [more]
A0A1Q3CEU3_CEPFO3.250e-1363.83Bromodomain domain-containing protein/PHD domain-c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:350445..350723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175760|e_gw1.129.107.1
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001763,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005911,GO:0006139,GO:0006259,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0008327,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009648,GO:0009653,GO:0009791,GO:0009889,GO:0009987,GO:0010016,GO:0010216,GO:0010223,GO:0010228,GO:0010346,GO:0010468,GO:0010556,GO:0016043,GO:0016407,GO:0016410,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022414,GO:0030054,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033043,GO:0033044,GO:0034212,GO:0034641,GO:0036094,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048367,GO:0048573,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051252,GO:0051276,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0061630,GO:0061659,GO:0061733,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090308,GO:0097159,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902275,GO:1903506,GO:1905393,GO:2000112,GO:2001141
Descriptionmethyl-CpG-binding domain-containing protein
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs2CMNF@1|root,2QQZG@2759|Eukaryota,37REE@33090|Viridiplantae,3GDDM@35493|Streptophyta,3KS90@4447|Liliopsida
Evalue3.91e-14
Seed ortholog42345.XP_008806334.1
Hectar predicted targeting categoryother localisation
TranscriptId176082
TrackFilteredModels1
ProteinId175760
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175760gene_9879Tribonema minus UTEX_B_3156 geneContig_129 350445..350723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9879_1exon_9879_1Tribonema minus UTEX_B_3156 exonContig_129 350445..350723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9879CDS_9879Tribonema minus UTEX_B_3156 CDSContig_129 350445..350723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175760Trimin1|175760|e_gw1.129.107.1Tribonema minus UTEX_B_3156 polypeptideContig_129 350445..350723 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9879 ID=mRNA_9879|Name=jgi.p|Trimin1|175760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_129:350445..350723- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGGACGAGCACGCGCCGGCGGAGAAGGATTCCAAGCCGGCGGT
GGAGGATTCCAAGCCGGCGGTGGCGCTTGAGTGCGCCGCGGCGGCGGCAG
CCGGCGACGCGCCGCTGTTTCTGGCGCAGGAGGGGGCAGTCGAGGAGGGC
TGCGTGCTGTGCGGCGTGGATGAGGATCCGGACCAGACGCTCCTGTGCGA
CGGGCCTTGCGGGCGCGAGTTCCACCTGTACTGCTTGGAGCCGCCGCTCG
CGGACCTGCCGGAGGGGGATTGGTACTGC
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protein sequence of jgi.p|Trimin1|175760

>Trimin1|175760|e_gw1.129.107.1 ID=Trimin1|175760|e_gw1.129.107.1|Name=jgi.p|Trimin1|175760|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
MAADEHAPAEKDSKPAVEDSKPAVALECAAAAAAGDAPLFLAQEGAVEEG
CVLCGVDEDPDQTLLCDGPCGREFHLYCLEPPLADLPEGDWYC
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mRNA from alignment at Contig_129:350445..350723-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9879 ID=mRNA_9879|Name=jgi.p|Trimin1|175760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_129:350445..350723- (Tribonema minus UTEX_B_3156 )
ATGGCCGCGGACGAGCACGCGCCGGCGGAGAAGGATTCCAAGCCGGCGGT
GGAGGATTCCAAGCCGGCGGTGGCGCTTGAGTGCGCCGCGGCGGCGGCAG
CCGGCGACGCGCCGCTGTTTCTGGCGCAGGAGGGGGCAGTCGAGGAGGGC
TGCGTGCTGTGCGGCGTGGATGAGGATCCGGACCAGACGCTCCTGTGCGA
CGGGCCTTGCGGGCGCGAGTTCCACCTGTACTGCTTGGAGCCGCCGCTCG
CGGACCTGCCGGAGGGGGATTGGTACTGC
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Coding sequence (CDS) from alignment at Contig_129:350445..350723-

>mRNA_9879 ID=mRNA_9879|Name=jgi.p|Trimin1|175760|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_129:350445..350723- (Tribonema minus UTEX_B_3156 )
ATGGCCGCGGACGAGCACGCGCCGGCGGAGAAGGATTCCAAGCCGGCGGT
GGAGGATTCCAAGCCGGCGGTGGCGCTTGAGTGCGCCGCGGCGGCGGCAG
CCGGCGACGCGCCGCTGTTTCTGGCGCAGGAGGGGGCAGTCGAGGAGGGC
TGCGTGCTGTGCGGCGTGGATGAGGATCCGGACCAGACGCTCCTGTGCGA
CGGGCCTTGCGGGCGCGAGTTCCACCTGTACTGCTTGGAGCCGCCGCTCG
CGGACCTGCCGGAGGGGGATTGGTACTGC
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