mRNA_9871 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175777
Unique NamemRNA_9871
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A836CL20_9STRA (J domain of Hsj1a (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL20_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.490e-50
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTGISSRIAGTQ 240
            LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTGISSRIAGTQ
Sbjct:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTGISSRIAGTQ 80
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BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: UPI0011B468BB (dnaJ homolog subfamily B member 2 isoform X2 n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B468BB)

HSP 1 Score: 82.8 bits (203), Expect = 5.190e-17
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDK-GAEERFKHISEAYDTLKDRNKRFDYDS-----KLRRGCVFTRTGISSRIAG 234
            LGVSKTAS EDI+KAYR++A+RWHPDKN  +K GAE++FK I+EAY+ L D++KR  YDS       RRG   + T   S   G
Sbjct:    8 LGVSKTASQEDIKKAYRKQALRWHPDKNPDNKEGAEKKFKEIAEAYEVLSDKSKRASYDSYGNDRMPRRGSPGSPTDFPSEFPG 91
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BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A8C4YW82_GADMO (DnaJ heat shock protein family (Hsp40) member B2 n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4YW82_GADMO)

HSP 1 Score: 82.8 bits (203), Expect = 9.220e-17
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDK-GAEERFKHISEAYDTLKDRNKRFDYDS-----KLRRGCVFTRTGISSRIAG 234
            LGVSKTAS EDI+KAYR++A+RWHPDKN  +K GAE++FK I+EAY+ L D++KR  YDS       RRG   + T   S   G
Sbjct:    8 LGVSKTASQEDIKKAYRKQALRWHPDKNPDNKEGAEKKFKEIAEAYEVLSDKSKRASYDSYGNDRMPRRGSPGSPTDFPSEFPG 91
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A6I0E445_9BACT (DnaJ domain-containing protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I0E445_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.480e-16
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYD 174
            LGVSK+AS E+I+KAYR++A+++HPDKN GDK AE++FK  +EAY+ L D NKR  YD
Sbjct:   11 LGVSKSASKEEIKKAYRQKAIQYHPDKNPGDKEAEDKFKEAAEAYEVLSDDNKRARYD 68
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A7C3XBC9_9ACTN (Chaperone protein DnaJ n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C3XBC9_9ACTN)

HSP 1 Score: 81.3 bits (199), Expect = 2.770e-16
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTG 213
            LGVSK A+ ++I+KAYR+ A R+HPD+N GDK AEE+FK I +AY+TL D  KR  YD  LR G    RTG
Sbjct:    8 LGVSKNATQDEIKKAYRKLARRYHPDRNPGDKQAEEKFKEIGQAYETLSDAQKRKQYDEMLRLGAFDPRTG 78
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BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A523WPG1_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A523WPG1_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 3.540e-16
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYD 174
            LGV + AS+E+I+KAYR++A+++HPDKN GDK AEERFK  +EAY+ LKD  KR  YD
Sbjct:   10 LGVGRDASEEEIKKAYRKQALQYHPDKNPGDKQAEERFKEATEAYEVLKDPQKRSQYD 67
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A8F9XLP6_9BACT (Chaperone protein DnaJ n=1 Tax=Oleiharenicola sp. KSB-15 TaxID=2862869 RepID=A0A8F9XLP6_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.740e-16
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYD 174
            LGV KTA++E+++KAYR++AV++HPDKN GDK AEE FK +SEAYD LKD +KR  YD
Sbjct:   10 LGVGKTATEEELKKAYRKKAVQYHPDKNPGDKSAEEMFKKVSEAYDVLKDADKRAAYD 67
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A7C3DCY9_9BACT (J domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3DCY9_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.560e-16
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRR 189
            LGVS+ ASDE+I+KAYR  A R+HPD+N GDK AEERFK I+EAY+ LKD  KR  YD +LRR
Sbjct:   10 LGVSENASDEEIKKAYRDLAKRYHPDRNPGDKQAEERFKEITEAYEVLKDPEKRKQYD-QLRR 71
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: L1NH06_9PORP (Chaperone protein DnaJ n=3 Tax=Porphyromonas catoniae TaxID=41976 RepID=L1NH06_9PORP)

HSP 1 Score: 80.5 bits (197), Expect = 5.210e-16
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTGISSRIAG 234
            LGVSK ASDE+++KAYR+ A+++HPDKN GDK AEE+FK ++EAYD L D  KR  YD        F   G+ S  AG
Sbjct:   11 LGVSKGASDEELKKAYRKLAIKYHPDKNPGDKEAEEKFKELAEAYDVLSDPQKRQRYDQ-------FGHAGVGSSAAG 81
[Close]
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Match: A0A354JS69_9BACT (Chaperone protein DnaJ n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A354JS69_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 5.240e-16
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKDRNKRFDYDSKLRRGCVFTRTGISSRIAG 234
            LGVS+ AS E+I+KAYR+ A+++HPDKN GDKGAEE+FK  +EAY+ L D NKR  YD        F   G+ S  AG
Sbjct:   11 LGVSRNASKEEIKKAYRQMALKYHPDKNPGDKGAEEKFKEAAEAYEVLSDDNKRARYDQ-------FGHAGVGSSAAG 81
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175777 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL20_9STRA1.490e-50100.00J domain of Hsj1a (Fragment) n=1 Tax=Tribonema min... [more]
UPI0011B468BB5.190e-1754.76dnaJ homolog subfamily B member 2 isoform X2 n=1 T... [more]
A0A8C4YW82_GADMO9.220e-1754.76DnaJ heat shock protein family (Hsp40) member B2 n... [more]
A0A6I0E445_9BACT2.480e-1662.07DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7C3XBC9_9ACTN2.770e-1657.75Chaperone protein DnaJ n=1 Tax=Actinomycetia bacte... [more]
A0A523WPG1_9BACT3.540e-1662.07Molecular chaperone DnaJ (Fragment) n=1 Tax=candid... [more]
A0A8F9XLP6_9BACT3.740e-1665.52Chaperone protein DnaJ n=1 Tax=Oleiharenicola sp. ... [more]
A0A7C3DCY9_9BACT4.560e-1666.67J domain-containing protein (Fragment) n=1 Tax=Bac... [more]
L1NH06_9PORP5.210e-1653.85Chaperone protein DnaJ n=3 Tax=Porphyromonas caton... [more]
A0A354JS69_9BACT5.240e-1653.85Chaperone protein DnaJ n=1 Tax=Bacteroidales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:322864..323314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175777|e_gw1.129.8.1
BRITEko00000,ko03029,ko03110
KEGG koko:K03686
Preferred namednaJ
DescriptionATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG categoryO
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,4NF41@976|Bacteroidetes,2FPHH@200643|Bacteroidia,22WBJ@171551|Porphyromonadaceae
Evalue8.55e-17
Seed ortholog1127696.HMPREF9134_00346
Hectar predicted targeting categoryother localisation
TranscriptId176099
TrackFilteredModels1
ProteinId175777
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175777gene_9871Tribonema minus UTEX_B_3156 geneContig_129 322864..323314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175777Trimin1|175777|e_gw1.129.8.1Tribonema minus UTEX_B_3156 polypeptideContig_129 322864..323314 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9871_2exon_9871_2Tribonema minus UTEX_B_3156 exonContig_129 322864..323056 -
exon_9871_1exon_9871_1Tribonema minus UTEX_B_3156 exonContig_129 323265..323314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9871CDS_9871Tribonema minus UTEX_B_3156 CDSContig_129 323265..323314 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Trimin1|175777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_129:322864..323314- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGGTGTGTCAAAGACAGCAAGCGACGAGGACATCAGGAAGGCCTACAG
AAGGGAAGCGGTGCGGTGGCATCCGGACAAGAACGCTGGGGACAAGGGTG
CCGAGGAAAGGTTCAAACACATCAGTGAGGCTTACGACACTCTCAAGGAC
CGCAACAAGCGATTCGACTACGACAGCAAGCTACGCAGAGGGTGCGTCTT
CACACGCACTGGCATCAGCTCACGCATTGCCGGCACTCAATGA
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protein sequence of jgi.p|Trimin1|175777

>Trimin1|175777|e_gw1.129.8.1 ID=Trimin1|175777|e_gw1.129.8.1|Name=jgi.p|Trimin1|175777|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=81bp
LGVSKTASDEDIRKAYRREAVRWHPDKNAGDKGAEERFKHISEAYDTLKD
RNKRFDYDSKLRRGCVFTRTGISSRIAGTQ*
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mRNA from alignment at Contig_129:322864..323314-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Trimin1|175777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=451bp|location=Sequence derived from alignment at Contig_129:322864..323314- (Tribonema minus UTEX_B_3156 )
CTCGGTGTGTCAAAGACAGCAAGCGACGAGGACATCAGGAAGGCCTACAG
GTGCGCTGCAGCATATGGCTATGCCTTGTGTGGCACTCACTTCGCACGTG
CACCACTTCTGGTACGCATGCTCTCTGCTGCTGTTCACGGTTACACTGCA
AGTTCGTTGTTGTTGCCTCGCGAGCCTGAACATGTTGGTTCTGAGTTTGC
GTTCATGCTGACTGTTGACATGCTGCTACGATATTCACTGCACTGTTGCA
CACTACAGAAGGGAAGCGGTGCGGTGGCATCCGGACAAGAACGCTGGGGA
CAAGGGTGCCGAGGAAAGGTTCAAACACATCAGTGAGGCTTACGACACTC
TCAAGGACCGCAACAAGCGATTCGACTACGACAGCAAGCTACGCAGAGGG
TGCGTCTTCACACGCACTGGCATCAGCTCACGCATTGCCGGCACTCAATG
A
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Coding sequence (CDS) from alignment at Contig_129:322864..323314-

>mRNA_9871 ID=mRNA_9871|Name=jgi.p|Trimin1|175777|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=243bp|location=Sequence derived from alignment at Contig_129:322864..323314- (Tribonema minus UTEX_B_3156 )
CTCGGTGTGTCAAAGACAGCAAGCGACGAGGACATCAGGAAGGCCTACAG
AAGGGAAGCGGTGCGGTGGCATCCGGACAAGAACGCTGGGGACAAGGGTG
CCGAGGAAAGGTTCAAACACATCAGTGAGGCTTACGACACTCTCAAGGAC
CGCAACAAGCGATTCGACTACGACAGCAAGCTACGCAGAGGGTGCGTCTT
CACACGCACTGGCATCAGCTCACGCATTGCCGGCACTCAATGA
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