mRNA_9867 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175740
Unique NamemRNA_9867
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A835ZB24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB24_9STRA)

HSP 1 Score: 491 bits (1263), Expect = 1.520e-173
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1 
Query:    1 MPRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPRMMQAPAAMPQAPSAAAQQHGSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCRPPPLHRLCT 903
            MPRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPRMMQAPAAMPQAPSAAAQQHGSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCRPPPLHRLCT
Sbjct:    1 MPRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPRMMQAPAAMPQAPSAAAQQHGSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCRPPPLHRLCT 301
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A836CPN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN2_9STRA)

HSP 1 Score: 250 bits (639), Expect = 4.990e-80
Identity = 137/227 (60.35%), Postives = 155/227 (68.28%), Query Frame = 1 
Query:   16 KLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRL---DMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            +LF+GGL+F TSDDTL+ +F Q+G+VTDA+VM+DGVSRRSRGFGF+TYAD   VEYALAQPEHIIDGRRVEAKRAVPRTD                 G PHD+ RL   D        P  A  ++            L  +       K+FVGGLHYETRD+ FR YFEQFG VLAADVMFNRETHKSRGFGFV FE  +S   VL+ SHHTI GKVVEVKRAVPR
Sbjct:    4 RLFVGGLAFATSDDTLKAHFDQFGLVTDAIVMRDGVSRRSRGFGFVTYADLSCVEYALAQPEHIIDGRRVEAKRAVPRTDR----------EGNHGPGNPHDSYRLHGMDAGQAAGMFPPEALLTTPSGSPGVAEFSPLAAN-------KLFVGGLHYETRDSTFRAYFEQFGPVLAADVMFNRETHKSRGFGFVTFEHPESVGHVLRVSHHTIGGKVVEVKRAVPR 213
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: D7G4R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R7_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.940e-71
Identity = 130/235 (55.32%), Postives = 164/235 (69.79%), Query Frame = 1 
Query:    7 RNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMV------LASAQAAAANTQDLYGVPH--DADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            R++K+FIGGLSFET+D+ L+ YF Q+G V DA+VMKD VSRRSRGFGFITY +  SV+ AL+  +HI+D RRVEAKRAVPR+++          AQ+ +  +Q+ +  P   ++  L   T   R  SN++ S+            +  DG     TK+FVGGLHYETRD + + YFEQFG V  A+VMFNRETHKSRGFGFVVFES +SA  VLQ+SHHT+NGKVVEVKRAVPR
Sbjct:    7 RSVKIFIGGLSFETTDEALKRYFEQFGPVADAIVMKDAVSRRSRGFGFITYMNSASVDAALSVKQHIVDNRRVEAKRAVPRSEVPPKVEPQQQLAQSPSLQSQNSWDTPFAMESYALRGVTPEGRTRSNSTVSASSMGGL------ITLDGVPMA-TKIFVGGLHYETRDASLQAYFEQFGPVQTAEVMFNRETHKSRGFGFVVFESEESANAVLQSSHHTVNGKVVEVKRAVPR 234
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A6H5KXI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.240e-67
Identity = 130/235 (55.32%), Postives = 164/235 (69.79%), Query Frame = 1 
Query:    7 RNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMV------LASAQAAAANTQDLYGVPH--DADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            R++K+FIGGLSFET+D+ L+ YF Q+G V DA+VMKD VSRRSRGFGFITY +  SV+ AL+  +HI+D RRVEAKRAVPR+++          AQ+ +  +Q+ +  P   ++  L   T   R  SN++ S+            +  DG     TK+FVGGLHYETRD + + YFEQFG V  A+VMFNRETHKSRGFGFVVFES +SA  VLQ+SHHT+NGKVVEVKRAVPR
Sbjct:    7 RSVKIFIGGLSFETTDEALKRYFEQFGPVADAIVMKDAVSRRSRGFGFITYMNSASVDAALSVKQHIVDNRRVEAKRAVPRSEVPPKVEPQQQLAQSPSIQSQNSWDPPFAMESYALRGVTAEGRTRSNSTVSASSMGGL------ITLDGVPMA-TKIFVGGLHYETRDASLQAYFEQFGPVQTAEVMFNRETHKSRGFGFVVFESEESANAVLQSSHHTVNGKVVEVKRAVPR 234
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A8J4W8W6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4W8W6_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.780e-66
Identity = 120/224 (53.57%), Postives = 145/224 (64.73%), Query Frame = 1 
Query:   16 KLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            K+FIGGLS+ET+D+ LR YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ AL QP HI+D RRVEAKRAVPR +                           +  + N APSN    +           +L  + A     K+FVGGLHYET+D  F+ YF Q+GKV++A+VMFNRET+KSRGFGFV+FES DS   VLQ  +H I+GK VEVKRAVPR
Sbjct:    9 KIFIGGLSYETTDEKLRAYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPVCVDRALTQPNHILDSRRVEAKRAVPRAE--------------------------SLRDIGNGAPSNRGNGTNSIS-------SLSMNSAVGATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEDSVELVLQDKNHIIDGKSVEVKRAVPR 199
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A067BU65_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BU65_SAPPC)

HSP 1 Score: 219 bits (559), Expect = 8.130e-66
Identity = 123/229 (53.71%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    4 PRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTK-VFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            P+  K+FIGGLS+ET+DD LR YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ ALAQP H++D RRVEAKRAVPR +           +++D   +          + R    + +S SS                 +A G TK +FVGGLHYET+D  F+TYF+QFGKV++A+VMFNRET+KSRGFGFV+FE+  S   VLQ   H I+GK VEVKRAVPR
Sbjct:    6 PKIGKIFIGGLSYETTDDKLRAYFGAYGAVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQPNHVLDNRRVEAKRAVPRAE-----------SSRDTSSI----------SARGNVSAGSSVSSA----------------SAVGATKKIFVGGLHYETKDAEFKTYFQQFGKVVSAEVMFNRETNKSRGFGFVIFETEASVELVLQDKTHVIDGKSVEVKRAVPR 197
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A421GV64_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GV64_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.930e-65
Identity = 120/224 (53.57%), Postives = 145/224 (64.73%), Query Frame = 1 
Query:   16 KLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            K+FIGGLS+ET+D+ LR YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ AL QP HI+D RRVEAKRAVPR +                           +  + N APSN    +           +L  + A     K+FVGGLHYET+D  F+ YF Q+GKV++A+VMFNRET+KSRGFGFV+FES DS   VLQ  +H I+GK VEVKRAVPR
Sbjct:    9 KIFIGGLSYETTDEKLRAYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPVCVDRALTQPNHILDSRRVEAKRAVPRAE--------------------------SLRDIGNGAPSNRGNGTNSIS-------SLSMNSAVGATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEDSVELVLQDKNHIIDGKSVEVKRAVPR 199
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: W2RJD1_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2RJD1_PHYPN)

HSP 1 Score: 214 bits (545), Expect = 3.200e-65
Identity = 117/224 (52.23%), Postives = 146/224 (65.18%), Query Frame = 1 
Query:   16 KLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            K+FIGGLS+ET+D+ LR+YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ ALAQP HI+D RRVEAKRAVPR + +                        D+ +  + +  N S S            ++  +       K+FVGGLHYET+D  F+ YF Q+GKV++A+VMFNRET+KSRGFGFV+FES  S   VLQ  +H I+GK VEVKRAVPR
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-----------------------RDIGSGSSSSRGNGSSS----------ISSISANSTVGATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPR 199
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: T0QU04_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QU04_SAPDV)

HSP 1 Score: 219 bits (559), Expect = 1.440e-64
Identity = 123/229 (53.71%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:    4 PRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTK-VFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            P+  K+FIGGLS+ET+DD LR YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ ALAQP H++D RRVEAKRAVPR +           +++D   +          + R    + +S SS                 +A G TK +FVGGLHYET+D  F+TYF+QFGKV++A+VMFNRET+KSRGFGFV+FE+  S   VLQ   H I+GK VEVKRAVPR
Sbjct:    6 PKIGKIFIGGLSYETTDDKLRAYFGAYGAVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQPNHVLDNRRVEAKRAVPRAE-----------SSRDTSSI----------STRGNVSAGSSVSSA----------------SAVGATKKIFVGGLHYETKDAEFKTYFQQFGKVVSAEVMFNRETNKSRGFGFVIFETEASVELVLQDKTHVIDGKSVEVKRAVPR 197
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BLAST of jgi.p|Trimin1|175740 vs. uniprot
Match: A0A1V9YG10_9STRA (Heterogeneous nuclear ribonucleoprotein A1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG10_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.410e-64
Identity = 122/229 (53.28%), Postives = 151/229 (65.94%), Query Frame = 1 
Query:    4 PRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGFITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQDLYGVPHDADRLDMTTLRNRAPSNASCSSXXXXXXXXXXXALPQDGAAHGGTK-VFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFESADSAARVLQTSHHTINGKVVEVKRAVPR 687
            P+  K+FIGGLS+ET+DD LR+YF  +G VTDAVVMKD +SRRSRGFGFITYADP  V+ ALAQP H++D RRVEAKRAVPR +           + +D   +          + R    + +S SS                 +A G TK +FVGGLHYET+D  F+ YF+QFGKV++A+VMFNRET+KSRGFGFV+FE+  S   VLQ   H I+GK VEVKRAVPR
Sbjct:    6 PKIGKIFIGGLSYETTDDKLRSYFSAYGTVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQPNHVLDNRRVEAKRAVPRAE-----------SNRDTSSI----------STRGNVSAGSSVSSA----------------SAVGATKKIFVGGLHYETKDADFKKYFQQFGKVVSAEVMFNRETNKSRGFGFVIFETEASVELVLQDKTHVIDGKSVEVKRAVPR 197
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175740 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB24_9STRA1.520e-173100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPN2_9STRA4.990e-8060.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G4R7_ECTSI1.940e-7155.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXI0_9PHAE1.240e-6755.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J4W8W6_9STRA1.780e-6653.57Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A067BU65_SAPPC8.130e-6653.71Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A421GV64_9STRA1.930e-6553.57Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
W2RJD1_PHYPN3.200e-6552.23Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
T0QU04_SAPDV1.440e-6453.71Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YG10_9STRA3.410e-6453.28Heterogeneous nuclear ribonucleoprotein A1 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:305008..307764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175740|e_gw1.129.90.1
KEGG TC3.D.1.6
BRITEko00000,ko00001,ko00002,ko01000,ko03019
KEGG rclassRC00061
KEGG ReactionR11945
KEGG ModuleM00143
KEGG Pathwayko00190,ko01100,ko03015,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03015,map04714,map04723,map04932,map05010,map05012,map05016
KEGG koko:K03942,ko:K14411
EC1.6.5.3,1.6.99.3
Descriptionpoly(U) RNA binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
Evalue3.19e-72
Seed ortholog2880.D7G4R7
Hectar predicted targeting categoryother localisation
TranscriptId176062
TrackFilteredModels1
ProteinId175740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175740gene_9867Tribonema minus UTEX_B_3156 geneContig_129 305008..307764 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9867_1exon_9867_1Tribonema minus UTEX_B_3156 exonContig_129 305008..305121 +
exon_9867_2exon_9867_2Tribonema minus UTEX_B_3156 exonContig_129 305374..306017 +
exon_9867_3exon_9867_3Tribonema minus UTEX_B_3156 exonContig_129 307617..307764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9867CDS_9867Tribonema minus UTEX_B_3156 CDSContig_129 305008..305121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175740Trimin1|175740|e_gw1.129.90.1Tribonema minus UTEX_B_3156 polypeptideContig_129 305008..307764 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Trimin1|175740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=906bp|location=Sequence derived from alignment at Contig_129:305008..307764+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAGGAATCTCAAGCTGTTTATAGGAGGACTTTCGTTCGAGACATC
GGACGATACACTGCGGAACTACTTTAGGCAATGGGGTATGGTCACGGACG
CTGTTGTGATGAAGGACGGGGTGTCGAGGCGCAGCAGAGGCTTCGGCTTC
ATCACCTACGCTGACCCGCACAGCGTGGAGTACGCTCTGGCACAGCCGGA
GCACATCATTGACGGGCGCCGTGTGGAGGCGAAGCGCGCTGTGCCGCGCA
CCGACATGGTGCTGGCGTCGGCGCAGGCCGCGGCGGCAAATACGCAGGAC
CTGTACGGGGTGCCGCATGATGCGGACCGGCTCGACATGACGACGCTGCG
CAACCGCGCGCCCAGCAACGCGAGCTGCAGCAGCGGCGGCGGAGGCGGCG
GCGCGGGGGGCGGCGGCGCGCTGCCGCAGGACGGCGCCGCGCACGGCGGC
ACCAAGGTGTTCGTCGGCGGGCTGCACTACGAGACGCGCGACAACGCGTT
CCGCACGTACTTTGAGCAGTTCGGCAAGGTGCTCGCCGCGGACGTCATGT
TCAACCGCGAGACGCACAAGTCGCGCGGCTTCGGCTTTGTCGTCTTTGAG
AGCGCGGACAGCGCTGCCAGGGTGCTGCAGACGTCGCACCACACCATCAA
CGGCAAGGTGGTCGAGGTCAAGCGCGCCGTGCCGCGCATGATGCAGGCGC
CCGCGGCGATGCCGCAGGCGCCGTCCGCCGCGGCGCAGCAGCACGGCTCC
TCCTTCATTGGCGGCGGCCACGGTGGCGGTGCAGCAGCGGCGGCGGCGGC
AGCGGCGGCGGCGGCGGCGGCGGCAGTGCGGGCGGCGGCAGCGGTGGCAG
GGGGCGGTAGTTGCGCAACCTGCCGCCCGCCCCCGCTGCACCGCCTCTGC
ACCTAA
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protein sequence of jgi.p|Trimin1|175740

>Trimin1|175740|e_gw1.129.90.1 ID=Trimin1|175740|e_gw1.129.90.1|Name=jgi.p|Trimin1|175740|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=302bp
MPRNLKLFIGGLSFETSDDTLRNYFRQWGMVTDAVVMKDGVSRRSRGFGF
ITYADPHSVEYALAQPEHIIDGRRVEAKRAVPRTDMVLASAQAAAANTQD
LYGVPHDADRLDMTTLRNRAPSNASCSSGGGGGGAGGGGALPQDGAAHGG
TKVFVGGLHYETRDNAFRTYFEQFGKVLAADVMFNRETHKSRGFGFVVFE
SADSAARVLQTSHHTINGKVVEVKRAVPRMMQAPAAMPQAPSAAAQQHGS
SFIGGGHGGGAAAAAAAAAAAAAAAVRAAAAVAGGGSCATCRPPPLHRLC
T*
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mRNA from alignment at Contig_129:305008..307764+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Trimin1|175740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2757bp|location=Sequence derived from alignment at Contig_129:305008..307764+ (Tribonema minus UTEX_B_3156 )
ATGCCTAGGAATCTCAAGCTGTTTATAGGAGGACTTTCGTTCGAGACATC
GGACGATACACTGCGGAACTACTTTAGGCAATGGGGTATGGTCACGGACG
CTGTTGTGATGAAGGTACGCTCATCGTGTCATGTCGTGAAGGCCCGAAGC
TGGTGATTTGCAGAGCTCCACACATCTGGGTGAACGCACACATCAGCTTT
CTGCAGCAATCTACTGTTTGTGTTGTGCCTCCAGCGACGGCTGGGGTCAT
GTAGGCAACGGTTATGTGAGGCTGCATGTGACATGTCTGCTGTGCGCATG
GATGGCAGTTGCACAGATCATGGAGCCAGCGGCTGAGGGAAACCGCTCTG
TGTGCTGGTGCCGCAGGACGGGGTGTCGAGGCGCAGCAGAGGCTTCGGCT
TCATCACCTACGCTGACCCGCACAGCGTGGAGTACGCTCTGGCACAGCCG
GAGCACATCATTGACGGGCGCCGTGTGGAGGCGAAGCGCGCTGTGCCGCG
CACCGACATGGTGCTGGCGTCGGCGCAGGCCGCGGCGGCAAATACGCAGG
ACCTGTACGGGGTGCCGCATGATGCGGACCGGCTCGACATGACGACGCTG
CGCAACCGCGCGCCCAGCAACGCGAGCTGCAGCAGCGGCGGCGGAGGCGG
CGGCGCGGGGGGCGGCGGCGCGCTGCCGCAGGACGGCGCCGCGCACGGCG
GCACCAAGGTGTTCGTCGGCGGGCTGCACTACGAGACGCGCGACAACGCG
TTCCGCACGTACTTTGAGCAGTTCGGCAAGGTGCTCGCCGCGGACGTCAT
GTTCAACCGCGAGACGCACAAGTCGCGCGGCTTCGGCTTTGTCGTCTTTG
AGAGCGCGGACAGCGCTGCCAGGGTGCTGCAGACGTCGCACCACACCATC
AACGGCAAGGTGGTCGAGGTCAAGCGCGCCGTGCCGCGCATGATGCAGGC
GCCCGCGGCGATGCCGCAGGCGCCGTCCGCCGCGGCGCAGCAGCACGGCT
CCTCCTTCATGTCGCCGATCACCACGCCGCTGCGCCACCGCGGCAGCGTC
AGCGGCGGCGGCGGCGGCGACGGCGGCAAGGACAGCGCGCTGCAGGGCAT
GATCGCTCAGCAGCTGCACCAGCAGCACATGCAAAACGTGGCGCGCTTCG
CGGCGGTGGCGGCGGCGGCGGCGGCGGACTCGTACGCGGCGGCGCTGCGG
TACGGCCCGGCGCCGTCGGGCGGGTACGCGTCGCAGAACGGGGATCATGA
GCAGCCGGCGCAGCATCAGCAGCATCAGCAGCAGCAGCAGCGCATCGCGC
CGCCGCCGCAGCCGCTGCGCATGCCATCGGCAAGCCCGCTGTTTGCTCCA
TCGACGCTGTACCACGGCGGCGCGGCGGTGGATCCCAGCTACCTCCTGCT
GCCGCAGGCCGCTGCGGGCACGCGCACGGACGGGTGGGGGCTCAGTAGCG
GCGGCGGCGACGGCGGCAGCGGCAGCGGCGTGCCTCCGCTGGACCTGGAC
GGACAGGCGTTGGACTCATACGCGATGCCGCCGCCGGGCGCGCCGACGCC
GGCGGGCCTCAAGGATGTGCGCTACGCGTTCTCGCACGCCGGCGCGGGGT
ACGCGCAGCAACCGCCGCAGCGCCGCGCATCGCACGGCGGCGCCGGCGGC
AGCGGCGGCGCCCGCGGCATCGGCTTCTCGCCCTTCCAGCTGCCGCTGGA
CAGGAACAGCAACCAGCCGCCATCGAAGGAGGGCGCGGACCTGTCGCCAT
TCTTTGGCGCGCAGTCGGGGCCGGATGGGCAGCCGCTGGGGGGCATGCGC
ATCGGCGGCGGGGGCGGCAGCGGCGGCGCGGCGGCGAGCAGCATGCTGGA
GGCGGCAATGGCGGACCTACAGCTGGGCGGCGCGGTGCCTCCGCGCGACA
CGTCGCTGTTCAGCTTCGCCGCCGGCGGTGGCAGCGCGGCCGGCGGCGGC
GGCGGAGGGTACGGGGCTGCCGGCCCTGACTCGGACGAGACGTTCGGCAG
GGACGACGGCGCCAGCAGCGTCGGCAGCGGCGCCGCGGCGGCAGCGAATG
GCGGCGCGCGCTCCACCAATGTGCTGGCGCCCTGGTCCAGCGACTTCTTT
GGCCGCGGCTTTGCCGCCGACTGCGGCGGCGGCGATGAGGCGGGCGGCGT
CGGCGCCGCCGCCGCCGGAGCAGGCTTCGAGGAGAGGGCCAACGGCTGCG
CGGGCGGCGGCGACGCGTGCGTCGGCCCCGACTGGGGTGCCAGTCGTGAC
TGGCCCGCGTACCACGGCAACGACGAGGTGGCGGGCGAGGGGCGCGGCGG
CGGCGCGCGCAGCGTCTCGCCCGTCGTCGCGGCCGCCGTCGCCGTGCCGC
CGCAGCCGCTGCAGCAGCAGCGCAGCCCGGCGGCGGGCTTGTGCGGACAG
GCGGACGCGGAGAACCAGCAGCTCGCCGGCGACGGCGCTGGCGCGGCAGC
GGCTCGCCTGGGGCTGCTGCCCTCCGGCCAGGCGTGCGGGCTGCCACTGA
GCACGGCGGCGCGCTTCGAAAGCTCGCTGTTCTAGGCGGCGCCGCATCTG
GTCGCGCGCGCTGCTGTCTGTGACGGCGGCAGGGGCGGTTGTACAGGCAG
CGGCAGCAGTGGCGGCGGCCACGGTGGCGGTGCAGCAGCGGCGGCGGCGG
CAGCGGCGGCGGCGGCGGCGGCGGCAGTGCGGGCGGCGGCAGCGGTGGCA
GGGGGCGGTAGTTGCGCAACCTGCCGCCCGCCCCCGCTGCACCGCCTCTG
CACCTAA
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Coding sequence (CDS) from alignment at Contig_129:305008..307764+

>mRNA_9867 ID=mRNA_9867|Name=jgi.p|Trimin1|175740|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=906bp|location=Sequence derived from alignment at Contig_129:305008..307764+ (Tribonema minus UTEX_B_3156 )
ATGCCTAGGAATCTCAAGCTGTTTATAGGAGGACTTTCGTTCGAGACATC
GGACGATACACTGCGGAACTACTTTAGGCAATGGGGTATGGTCACGGACG
CTGTTGTGATGAAGGACGGGGTGTCGAGGCGCAGCAGAGGCTTCGGCTTC
ATCACCTACGCTGACCCGCACAGCGTGGAGTACGCTCTGGCACAGCCGGA
GCACATCATTGACGGGCGCCGTGTGGAGGCGAAGCGCGCTGTGCCGCGCA
CCGACATGGTGCTGGCGTCGGCGCAGGCCGCGGCGGCAAATACGCAGGAC
CTGTACGGGGTGCCGCATGATGCGGACCGGCTCGACATGACGACGCTGCG
CAACCGCGCGCCCAGCAACGCGAGCTGCAGCAGCGGCGGCGGAGGCGGCG
GCGCGGGGGGCGGCGGCGCGCTGCCGCAGGACGGCGCCGCGCACGGCGGC
ACCAAGGTGTTCGTCGGCGGGCTGCACTACGAGACGCGCGACAACGCGTT
CCGCACGTACTTTGAGCAGTTCGGCAAGGTGCTCGCCGCGGACGTCATGT
TCAACCGCGAGACGCACAAGTCGCGCGGCTTCGGCTTTGTCGTCTTTGAG
AGCGCGGACAGCGCTGCCAGGGTGCTGCAGACGTCGCACCACACCATCAA
CGGCAAGGTGGTCGAGGTCAAGCGCGCCGTGCCGCGCATGATGCAGGCGC
CCGCGGCGATGCCGCAGGCGCCGTCCGCCGCGGCGCAGCAGCACGGCTCC
TCCTTCATTGGCGGCGGCCACGGTGGCGGTGCAGCAGCGGCGGCGGCGGC
AGCGGCGGCGGCGGCGGCGGCGGCAGTGCGGGCGGCGGCAGCGGTGGCAG
GGGGCGGTAGTTGCGCAACCTGCCGCCCGCCCCCGCTGCACCGCCTCTGC
ACCTAA
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