mRNA_9851 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352719
Unique NamemRNA_9851
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A835ZB18_9STRA (PX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB18_9STRA)

HSP 1 Score: 447 bits (1150), Expect = 1.900e-158
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 
Query:    1 MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF 711
            MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF
Sbjct:    1 MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF 237
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BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A6U1LL59_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LL59_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.130e-20
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  415 FAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVE 684
            +   RRF++FD LD  ++SAF       HHL +N+P LP K+ K + DH   +F+EQRR DL+AYLK LV +PH S NPD+  FLGI +E
Sbjct:   18 YVVTRRFSDFDRLDNHIKSAFW-----RHHLRSNLPCLPAKKIKYVIDHSQTDFVEQRRLDLEAYLKRLVQVPHASSNPDLHQFLGIPIE 102
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BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A7S2XAZ5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAZ5_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-11
Identity = 53/204 (25.98%), Postives = 91/204 (44.61%), Query Frame = 1 
Query:  103 VVQFRHSGATGDKQLIVNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQA---------VMQHAAGXXXXXXXXXXXXXSASDNRTVLYEVVSQLGGREFAALRRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGIRVEA 687
            VVQ RH+  +G + L+++G+ I +S  ++D  + + F I      V++      T   +C+ Q          +M +                     +  ++ V     G+     +RF +F   D  +R  F+G     HHL  N+P LP K+  L T+H++ EF+E+RR  L+ Y+  L  IP    NPD + F   + +A
Sbjct:   29 VVQLRHNNVSGRRILLLDGKEIWQSMKVMDVAENVHFEINGKQGVVKI-GVDYFTYTYLCLYQGRPMPEMTFDIMDYKEQGYQCKIPVVNVEI-VKGKKVAVFRVEMTHQGQTEVFRKRFRDFATFDDYLRGGFEG-----HHLLQNLPKLPPKQFTLFTNHFSKEFLEERRRGLEEYVNKLCRIPKAVANPDFVAFFTKKNKA 225
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BLAST of jgi.p|Trimin1|352719 vs. uniprot
Match: A0A6U1MRC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MRC3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.710e-10
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  427 RRFAEFDELDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDLDAYLKCLVAIPHTSKNPDIIDFLGI 675
            RRF +F   DA +++A KG     +HL +++PPLP K  KLL DH   EF+EQRR +L+ YL+ L+ +P  +    +  FLGI
Sbjct:   33 RRFRDFARFDAEMQAALKG-----NHLCSSLPPLPEKHVKLLLDHEDPEFVEQRRSELEDYLRRLLNMPFVTGMYQVHSFLGI 110
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352719 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZB18_9STRA1.900e-158100.00PX domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6U1LL59_9STRA1.130e-2050.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XAZ5_9EUKA2.800e-1125.98Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6U1MRC3_9STRA6.710e-1043.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:249618..251691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352719|estExt_Genemark1.C_Ctg_1290032
DescriptionPhoX homologous domain, present in p47phox and p40phox.
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D0N8@1|root,2SESW@2759|Eukaryota
Evalue7.53e-19
Seed ortholog227086.JGI_V11_78783
Hectar predicted targeting categoryother localisation
TranscriptId353041
TrackFilteredModels1
ProteinId352719
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352719gene_9851Tribonema minus UTEX_B_3156 geneContig_129 249618..251691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352719Trimin1|352719|estExt_Genemark1.C_Ctg_1290032Tribonema minus UTEX_B_3156 polypeptideContig_129 249618..251691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9851_5exon_9851_5Tribonema minus UTEX_B_3156 exonContig_129 249618..249835 -
exon_9851_4exon_9851_4Tribonema minus UTEX_B_3156 exonContig_129 250081..250308 -
exon_9851_3exon_9851_3Tribonema minus UTEX_B_3156 exonContig_129 251148..251241 -
exon_9851_2exon_9851_2Tribonema minus UTEX_B_3156 exonContig_129 251431..251536 -
exon_9851_1exon_9851_1Tribonema minus UTEX_B_3156 exonContig_129 251624..251691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9851CDS_9851Tribonema minus UTEX_B_3156 CDSContig_129 251624..251691 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9851 ID=mRNA_9851|Name=jgi.p|Trimin1|352719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=714bp|location=Sequence derived from alignment at Contig_129:249618..251691- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACTCCACCGGCAGCATTGCCGATAACCGCTTGCTACCACTGGC
AGATCTGGCGCTGCCGAGTGGCCCCGCTGATCCGCACTGGGCATCCGCTG
GAGTGGTCCAATTTAGACACAGCGGTGCCACCGGAGACAAGCAGCTCATT
GTGAACGGACAGCTCATTAGCAAGAGCTGTGATCTGCTGGATGGAGGCGA
TGTTATCCCGTTCCTCATCGGCGACATCAGCTGCAGGGTGGAGGTGCTGG
CGTTCCCTGGTCTCACAGGGCCTCAGGTGTGCGTGCGCCAGGCCGTGATG
CAGCATGCAGCAGGTGGCAGCGGCGGCGCGGCGTCGAGAGGCGGCGGCAG
CGCCAGCGCTAGCGACAACCGCACAGTGCTGTATGAGGTCGTGTCGCAGC
TGGGGGGGAGAGAGTTTGCGGCGCTGCGACGGTTTGCGGAGTTTGACGAG
CTAGATGCCCTCGTGCGCAGCGCTTTCAAAGGCAAGCTCGATGTCAGCCA
CCACCTCTACGCCAACGTGCCGCCGCTGCCGCGCAAGCGCAACAAGCTGC
TCACCGACCACTACACGCTGGAGTTCATCGAGCAGCGGCGGTGCGACCTC
GATGCGTACTTGAAGTGCCTCGTGGCCATACCGCACACGTCAAAGAACCC
GGACATCATAGACTTTCTCGGCATACGCGTAGAGGCTGCGCCCCAGCAAA
GCGCCAGCTTCTGA
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protein sequence of jgi.p|Trimin1|352719

>Trimin1|352719|estExt_Genemark1.C_Ctg_1290032 ID=Trimin1|352719|estExt_Genemark1.C_Ctg_1290032|Name=jgi.p|Trimin1|352719|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=238bp
MGNSTGSIADNRLLPLADLALPSGPADPHWASAGVVQFRHSGATGDKQLI
VNGQLISKSCDLLDGGDVIPFLIGDISCRVEVLAFPGLTGPQVCVRQAVM
QHAAGGSGGAASRGGGSASASDNRTVLYEVVSQLGGREFAALRRFAEFDE
LDALVRSAFKGKLDVSHHLYANVPPLPRKRNKLLTDHYTLEFIEQRRCDL
DAYLKCLVAIPHTSKNPDIIDFLGIRVEAAPQQSASF*
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mRNA from alignment at Contig_129:249618..251691-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9851 ID=mRNA_9851|Name=jgi.p|Trimin1|352719|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2074bp|location=Sequence derived from alignment at Contig_129:249618..251691- (Tribonema minus UTEX_B_3156 )
ATGGGCAACTCCACCGGCAGCATTGCCGATAACCGCTTGCTACCACTGGC
AGATCTGGCGCTGCCGAGGTTGCTGGTTCCATCCAAAGCAGTGTTGTCGT
TATTGAGAACTAAAATATGGGTAGTGCCTTCTAAGGGAGCGCCTGGCTTC
ATCAGTGGCCCCGCTGATCCGCACTGGGCATCCGCTGGAGTGGTCCAATT
TAGACACAGCGGTGCCACCGGAGACAAGCAGCTCATTGTGAACGGACAGC
TCATTAGCAAGGTGCGAACGGACACGAAACTCCAGCAACCTAATGCCCGC
TTCTCTTGCATGCACGTATTGAGTTTGTAGGTGCTACTGACCCTACCGCC
AACTGCTGTACCAAGAGAAAATGCGCAAATAGATCCAACCACACTCGTCC
AGGCCATAACACCTCACCTGATAATGTGTTCCATCGTGCGCCGCCTTCAG
AGCTGTGATCTGCTGGATGGAGGCGATGTTATCCCGTTCCTCATCGGCGA
CATCAGCTGCAGGGTGGAGGTGCTGGCGTTCCCTGGTCTCACAGGTTCGC
ATCTGACAAGCTGTACTCGTTCAAGTGCGGGGGGGGGGGGGGTCGTGTGG
TGGCCATAGCCGTATCTCTTGCAATGCCTATGTAACAGCTTCACCATCCC
TTTTTCAACACTTCAGTCACGACATGCAGGATGCGAGCAGAGCAGTGGTC
ATTGTGCTTCGACATACATATTACATGTCGCACATGTCGCACATGTGGCA
AGTCAACCTTGAGTGTTCCTTGACCAGTGGTTTCCAGAGTGTGCAATGCC
ACGTGTTGGTGTTTGTGGACTGATGCGGACATGAACACCGAAGAGAAGGC
ACTTGCTTGCAGCAGTTATCACAGGCGTTCACCTTGCATTCCGCACACGG
TGCGAACCGCTCGAGGTTTTTGAGTGCAACTCAGCCAGCCACATCTTCGA
CTGCTCACCAGCATTGTCCTTGGCGTGCCTGCGTACCTGCCGAGCAGACT
TTGTACTGTACTGCAATGACATCCGTCTACCGGACGTCATGTCGGAGCAG
GAGCCACACAACATCAAACGTGAGTACTCGTGTCCCTGACAATGATGCTG
TTTCGCTCATTGCTCCTCATGCGGGTGGGCTCTTTGGCGCATCTCCCGCT
CGTACGGCACGCACATATGCACACTGCCAGGTCGCCAGCATGCATGGAGG
CATGCAATGCCGCGCTATCATCAGCAGCAGGCATCGCAGAGTGTCCGTGC
TGATGTTGCTATCGCGTAGCGTGCAGCGCACAAGAATGAACTGACACCTC
TGGTGCCACCACCAGTGCACCTTCCAGCTGCACTTCAGTCACACTTACTG
CCAGTATTCCATGCGGCGCGTCGGATACTGCAGGGCCTCAGGTGTGCGTG
CGCCAGGCCGTGATGCAGCATGCAGCAGGTGGCAGCGGCGGCGCGGCGTC
GAGAGGCGGCGGCAGCGCCAGCGCTAGCGACAACCGCACAGTGCTGTATG
AGGTCGTGTCGCAGCTGGGGGGGAGAGAGTTTGCGGCGCTGCGACGGTTT
GCGGAGTTTGACGAGCTAGATGCCCTCGTGCGCAGCGCTTTCAAAGGCAA
GCTCGATGTCAGTCGCGGCGTTCTCACGTCTCACGATCTGTCACCATGCA
GGACAGTCTGGGGTGGTCTGAACAGCATGTGCCGGCGCGTGACACGACAA
GGGGCTGTGCGCTTGTGAAAGTGTGGGTAATGCCCTCCTCGATCGCCCTT
CCCTGCCTCCACTGCCCTTACCTGCTGTCTGGGTTGATCGCTGCACTGCC
TCCACTGCCCTTGCCTGCTATCCGGGTTGATCGCTGTGGTGCCCGCCTCT
GCGCAGGCCACCACCTCTACGCCAACGTGCCGCCGCTGCCGCGCAAGCGC
AACAAGCTGCTCACCGACCACTACACGCTGGAGTTCATCGAGCAGCGGCG
GTGCGACCTCGATGCGTACTTGAAGTGCCTCGTGGCCATACCGCACACGT
CAAAGAACCCGGACATCATAGACTTTCTCGGCATACGCGTAGAGGCTGCG
CCCCAGCAAAGCGCCAGCTTCTGA
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Coding sequence (CDS) from alignment at Contig_129:249618..251691-

>mRNA_9851 ID=mRNA_9851|Name=jgi.p|Trimin1|352719|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=714bp|location=Sequence derived from alignment at Contig_129:249618..251691- (Tribonema minus UTEX_B_3156 )
ATGGGCAACTCCACCGGCAGCATTGCCGATAACCGCTTGCTACCACTGGC
AGATCTGGCGCTGCCGAGTGGCCCCGCTGATCCGCACTGGGCATCCGCTG
GAGTGGTCCAATTTAGACACAGCGGTGCCACCGGAGACAAGCAGCTCATT
GTGAACGGACAGCTCATTAGCAAGAGCTGTGATCTGCTGGATGGAGGCGA
TGTTATCCCGTTCCTCATCGGCGACATCAGCTGCAGGGTGGAGGTGCTGG
CGTTCCCTGGTCTCACAGGGCCTCAGGTGTGCGTGCGCCAGGCCGTGATG
CAGCATGCAGCAGGTGGCAGCGGCGGCGCGGCGTCGAGAGGCGGCGGCAG
CGCCAGCGCTAGCGACAACCGCACAGTGCTGTATGAGGTCGTGTCGCAGC
TGGGGGGGAGAGAGTTTGCGGCGCTGCGACGGTTTGCGGAGTTTGACGAG
CTAGATGCCCTCGTGCGCAGCGCTTTCAAAGGCAAGCTCGATGTCAGCCA
CCACCTCTACGCCAACGTGCCGCCGCTGCCGCGCAAGCGCAACAAGCTGC
TCACCGACCACTACACGCTGGAGTTCATCGAGCAGCGGCGGTGCGACCTC
GATGCGTACTTGAAGTGCCTCGTGGCCATACCGCACACGTCAAAGAACCC
GGACATCATAGACTTTCTCGGCATACGCGTAGAGGCTGCGCCCCAGCAAA
GCGCCAGCTTCTGA
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