mRNA_9814 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135885
Unique NamemRNA_9814
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A835ZCD9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.400e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEARTAGRRWVDIADMLGRTNGDVKNRYYNAVRKQ 162
            HLDPQRKKGAWTAEEEILVAEARTAGRRWVDIADMLGRTNGDVKNRYYNAVRKQ
Sbjct:    1 HLDPQRKKGAWTAEEEILVAEARTAGRRWVDIADMLGRTNGDVKNRYYNAVRKQ 54
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A835Z2L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2L4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.220e-13
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    4 LDPQRKKGAWTAEEEILVAEARTAGRRWVDIADMLGRTNGDVKNRYYNA 150
            L PQ KKG W  +EE ++AE   AGRRWVDIADMLGRTN +V+N +YNA
Sbjct:   53 LGPQHKKGVWMEDEETILAEQLAAGRRWVDIADMLGRTNLEVRNHHYNA 101
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: UPI00155B09C3 (protein ODORANT1-like n=1 Tax=Vitis riparia TaxID=96939 RepID=UPI00155B09C3)

HSP 1 Score: 54.7 bits (130), Expect = 9.780e-8
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEARTA-GRRWVDIADMLGRTNGDVKNRYYNAVRKQ 162
            HLDP  KKG ++ EE+  + + ++  G RW  IAD LGRT+ DVKNR++  ++K+
Sbjct:   62 HLDPYVKKGKFSKEEDKFIIDLQSRHGNRWTKIADRLGRTDNDVKNRWHEHLKKK 116
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A8J5XBU9_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBU9_DIALT)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-7
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEE-ILVAEARTAGRRWVDIADML-GRTNGDVKNRYYNAVRKQ 162
            HL P  KKGAW+AEE+ I+ AE +  G RW +IA +L GRT+  +KNR+ +A RK+
Sbjct:  124 HLCPDVKKGAWSAEEDAIIAAEVQRQGTRWNEIAKLLTGRTDNAIKNRWNSARRKE 179
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: UPI0018E20B5F (transcriptional activator Myb-like isoform X1 n=2 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E20B5F)

HSP 1 Score: 53.9 bits (128), Expect = 5.300e-7
Identity = 24/54 (44.44%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEA-RTAGRRWVDIADML-GRTNGDVKNRYYNAVR 156
            HL+P+ KKG+WTAEE+ ++ +A R  G RW DI+ +L GRT+  +KN + + ++
Sbjct:  123 HLNPEVKKGSWTAEEDRVICQAHRVLGNRWADISKLLPGRTDNSIKNHWNSTLK 176
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A0G4F7M3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F7M3_VITBC)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-6
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEARTA-GRRWVDIADML-GRTNGDVKNRYYNAVRK 159
            HLDP ++KG W+A+E+ L+ E +   G RW +IA +L GRT   VKNR+ + +R+
Sbjct:  143 HLDPTKRKGGWSADEDDLILEKQAQLGNRWSEIAKLLTGRTEHQVKNRFNSLMRR 197
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: S8BZH7_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8BZH7_9LAMI)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEE-EILVAEARTAGRRWVDIADML-GRTNGDVKNRYYNAVRKQ 162
            HLDP  KKGAWT EE EIL    +  G +W +IA  L GRT+  +KN ++ +++K+
Sbjct:   25 HLDPSIKKGAWTQEEDEILAQYHKKLGNKWAEIAKFLPGRTDNGIKNHWHCSLKKR 80
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A0D9V7M9_9ORYZ (Uncharacterized protein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0D9V7M9_9ORYZ)

HSP 1 Score: 51.6 bits (122), Expect = 3.490e-6
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEARTA-GRRWVDIADML-GRTNGDVKNRYYNAVRKQ 162
            HL+P+ +K AWTAEEE+ +  A    G +W +IA +L GRT+  +KN + +++RK+
Sbjct:  161 HLNPEIRKDAWTAEEELALINAHQVYGNKWAEIAKVLPGRTDNSIKNHWNSSLRKK 216
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: A0A7I8LL10_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LL10_SPIIN)

HSP 1 Score: 51.2 bits (121), Expect = 4.750e-6
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEARTA-GRRWVDIADML-GRTNGDVKNRYYNAVRKQ 162
            HL+P+ KKG WTAEEEI++  A    G +W +I+ +L GR++  +KN +  +V+K+
Sbjct:  155 HLNPEIKKGPWTAEEEIMLIRAHQIYGNKWAEISKLLPGRSDNSIKNHWNCSVKKK 210
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BLAST of jgi.p|Trimin1|135885 vs. uniprot
Match: J3L5Q1_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3L5Q1_ORYBR)

HSP 1 Score: 51.2 bits (121), Expect = 4.750e-6
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 HLDPQRKKGAWTAEEEILVAEA-RTAGRRWVDIADML-GRTNGDVKNRYYNAVRKQ 162
            HL+P  +K AWTAEEE+ +  A +  G +W +IA +L GRT+  +KN + +++RK+
Sbjct:  162 HLNPDIRKDAWTAEEEVALINAHKMYGNKWAEIAKVLPGRTDNSIKNHWNSSLRKK 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135885 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835ZCD9_9STRA1.400e-32100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z2L4_9STRA2.220e-1365.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00155B09C39.780e-845.45protein ODORANT1-like n=1 Tax=Vitis riparia TaxID=... [more]
A0A8J5XBU9_DIALT1.510e-751.79Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
UPI0018E20B5F5.300e-744.44transcriptional activator Myb-like isoform X1 n=2 ... [more]
A0A0G4F7M3_VITBC1.350e-645.45Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
S8BZH7_9LAMI1.690e-646.43Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
A0A0D9V7M9_9ORYZ3.490e-642.86Uncharacterized protein n=6 Tax=Mesangiospermae Ta... [more]
A0A7I8LL10_SPIIN4.750e-642.86Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
J3L5Q1_ORYBR4.750e-642.86Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:1731..1892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135885|gw1.129.10.1
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2880.D7G1V7|-
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue9.67e-09
Seed ortholog2880.D7G1V7
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId136207
TrackFilteredModels1
ProteinId135885
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135885gene_9814Tribonema minus UTEX_B_3156 geneContig_129 1731..1892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9814_1exon_9814_1Tribonema minus UTEX_B_3156 exonContig_129 1731..1892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9814CDS_9814Tribonema minus UTEX_B_3156 CDSContig_129 1731..1892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135885Trimin1|135885|gw1.129.10.1Tribonema minus UTEX_B_3156 polypeptideContig_129 1731..1892 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9814 ID=mRNA_9814|Name=jgi.p|Trimin1|135885|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_129:1731..1892- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCTGGACCCCCAGCGCAAGAAAGGCGCCTGGACGGCGGAGGAGGAGAT
TCTTGTGGCTGAGGCGCGCACGGCTGGCCGACGCTGGGTTGACATCGCCG
ACATGTTGGGGCGCACCAACGGGGACGTGAAGAACCGCTATTACAACGCG
GTTAGAAAACAG
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protein sequence of jgi.p|Trimin1|135885

>Trimin1|135885|gw1.129.10.1 ID=Trimin1|135885|gw1.129.10.1|Name=jgi.p|Trimin1|135885|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=54bp
HLDPQRKKGAWTAEEEILVAEARTAGRRWVDIADMLGRTNGDVKNRYYNA
VRKQ
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mRNA from alignment at Contig_129:1731..1892-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9814 ID=mRNA_9814|Name=jgi.p|Trimin1|135885|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_129:1731..1892- (Tribonema minus UTEX_B_3156 )
CACCTGGACCCCCAGCGCAAGAAAGGCGCCTGGACGGCGGAGGAGGAGAT
TCTTGTGGCTGAGGCGCGCACGGCTGGCCGACGCTGGGTTGACATCGCCG
ACATGTTGGGGCGCACCAACGGGGACGTGAAGAACCGCTATTACAACGCG
GTTAGAAAACAG
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Coding sequence (CDS) from alignment at Contig_129:1731..1892-

>mRNA_9814 ID=mRNA_9814|Name=jgi.p|Trimin1|135885|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=162bp|location=Sequence derived from alignment at Contig_129:1731..1892- (Tribonema minus UTEX_B_3156 )
CACCTGGACCCCCAGCGCAAGAAAGGCGCCTGGACGGCGGAGGAGGAGAT
TCTTGTGGCTGAGGCGCGCACGGCTGGCCGACGCTGGGTTGACATCGCCG
ACATGTTGGGGCGCACCAACGGGGACGTGAAGAACCGCTATTACAACGCG
GTTAGAAAACAG
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