mRNA_9797 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A835YJJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ1_9STRA) HSP 1 Score: 355 bits (912), Expect = 1.380e-122 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 2
Query: 74 MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW 679
MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW
Sbjct: 1 MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHGXXXXXXXXXXXXXXXVSDGGSSVYSEDVDGEAEPQACSPTPASVDEVDMAVSAKFASSFISDRMSVGGGTPASASPLRVHGDAFHEMVATTPGETFTMKRERRASIADDGW 202
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 9.220e-14 Identity = 57/127 (44.88%), Postives = 66/127 (51.97%), Query Frame = 2
Query: 2 RLLLHAAAPLDHCLGTVRREFARLMLRECAGQLPPAA-RALLHHAA-----RDQDLSLTAAAAAPRAIVPGASLSVGAQP--------VTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 340
RLL PL CL TVRREFARL C G + R LL H A R Q ++ P +S S+ VT+AGGLG G NPLD++FPFDPYLLRRSH Y+ MYN W
Sbjct: 540 RLLTCPLYPLRRCLDTVRREFARL----CCGLMDAYLDRDLLEHLAGISEERSQVSQTITVGSSFSCSTPRSSSSMSMSSNAMWTPSRVTKAGGLGRGSNPLDSFFPFDPYLLRRSHVYIDQMYNTW 662
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1CWQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWQ3_CYCTE) HSP 1 Score: 71.6 bits (174), Expect = 2.940e-11 Identity = 50/118 (42.37%), Postives = 60/118 (50.85%), Query Frame = 2
Query: 2 RLLLHAAAPLDHCLGTVRREFARLMLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTR-----AGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 340
RL H PL CL +VR EF L + L PA L AA Q + A R+ G+ +S A R GG+G G NPLD++FPFDPYLLRRSH Y+ GMY W
Sbjct: 53 RLCKHQLQPLRFCLESVREEF--LSVASMNSLLNPALHEKLVSAANAQSSTFATPIKANRS--RGSIISTPATLEKRRINGGVGGMGQGSNPLDSFFPFDPYLLRRSHRYIDGMYRNW 166
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S2YI08_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI08_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.180e-9 Identity = 43/115 (37.39%), Postives = 56/115 (48.70%), Query Frame = 2
Query: 2 RLLLHAAAPLDHCLGTVRREFARLMLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 346
R+ + +PLDHCL +V+ EF L G L L HA + Q A A +P + GGLG G NPL +FPFDPYLLR S+A++ YN+W G
Sbjct: 4 RICFYRLSPLDHCLASVKEEF--LEAATVLGVLDAQTIEQLAHANKQQKRPRKRAKAIS---IPTMMTLQKERKTGGVGGLGKGDNPLGTFFPFDPYLLRHSYAFIEPFYNHWKG 113
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S3XPV9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPV9_HETAK) HSP 1 Score: 60.5 bits (145), Expect = 5.500e-8 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2
Query: 206 SVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 340
+ G P RA A NPLD++FPFDPYLLR SH Y+AGMY++W
Sbjct: 4 AAGGDPYARAEREAAQANPLDSFFPFDPYLLRESHGYIAGMYHHW 48
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1ZLF3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF3_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.250e-7 Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = 2
Query: 14 HAAAPLDHCLGTVRREFARLMLRECAGQLPPAARALLHHAARDQDLS--LTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 346
H PL +CL +VR EF L L G L L H DQ ++ L+ ++ + + GGLG G NPLD++FPFDPYLLRRSH +V Y +W G
Sbjct: 695 HHLQPLKYCLESVRHEF--LHLASVFGLLDE--NLLQHLVLEDQKMASGLSKMRQRKARLISTPATLEKERMKGGVGGLGRGSNPLDSFFPFDPYLLRRSHPFVEPFYKHWEG 803
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: B7GDC9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDC9_PHATC) HSP 1 Score: 60.8 bits (146), Expect = 5.250e-7 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 236 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 346
GGLG G NPLD++FPFDPYLLR+SH +V YN+W+G
Sbjct: 601 GGLGKGTNPLDSFFPFDPYLLRKSHVFVDPFYNHWNG 637
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S3QGM3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QGM3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.190e-6 Identity = 43/120 (35.83%), Postives = 58/120 (48.33%), Query Frame = 2
Query: 5 LLLHAAAPLDHCLGTVRREFARLMLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTR------AGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 346
L H PL CL +VR EF L R + R ++ QD + + + + + AS A + R GGLG G NPLD++FPFDPYLLRRS+ +V Y +W G
Sbjct: 358 LCSHHLTPLKFCLESVRGEFLLLSDRFDLIESTLLGRLII------QDRKMASGLSTGKKKIKRASSIRTAATLERRRISGGVGGLGRGSNPLDSFFPFDPYLLRRSYTFVDPYYRHWEG 471
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S1UEK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEK1_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 3.690e-6 Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2
Query: 236 GGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYW 340
GGLG G NPLD++FPFDP+LLRRS+ +V Y YW
Sbjct: 37 GGLGLGSNPLDSFFPFDPFLLRRSYRFVERSYVYW 71
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Match: A0A7S2R3F1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3F1_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 8.830e-5 Identity = 38/117 (32.48%), Postives = 59/117 (50.43%), Query Frame = 2
Query: 2 RLLLHAAAPLDHCLGTVRREFARLMLRECAGQLPP--AARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPVTRAGGLGAGGNPLDAYFPFDPYLLRRSHAYVAGMYNYWHG 346
+L + PL++CL +VR EF L+L L + ++ + +S++ + + A+ A+ GGLG G NPLD++FPFDPYLLR S+ +V Y W G
Sbjct: 21 KLCSYHLQPLNYCLESVRGEF--LLLAHTFHILDDDLLEKMIVENQRLASGISISKQKKRKASSIRTAATLAKARMKGGVGGLGQGSNPLDSFFPFDPYLLRLSYMFVEPHYKNWEG 135 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|93624 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9797 ID=mRNA_9797|Name=jgi.p|Trimin1|93624|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_81:517556..518296- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGCCTGCTGCTGCACGCCGCGGCGCCGCTCGACCACTGCCTCGGCACGGback to top protein sequence of jgi.p|Trimin1|93624 >Trimin1|93624|CE93623_26 ID=Trimin1|93624|CE93623_26|Name=jgi.p|Trimin1|93624|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp MLRECAGQLPPAARALLHHAARDQDLSLTAAAAAPRAIVPGASLSVGAQPback to top mRNA from alignment at Contig_81:517556..518296- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9797 ID=mRNA_9797|Name=jgi.p|Trimin1|93624|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_81:517556..518296- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_81:517556..518296- >mRNA_9797 ID=mRNA_9797|Name=jgi.p|Trimin1|93624|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_81:517556..518296- (Tribonema minus UTEX_B_3156 )back to top |