mRNA_9732 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|93249
Unique NamemRNA_9732
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|93249 vs. uniprot
Match: A0A836C7U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.240e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 2 
Query:   83 MGLFDIIGGAVLAPAALILSAVSLNVLKTVLAKLSEVANGATELNQPFDAALPAIKSLHMLLNERLFEKGVRTDFGSVLAMAAVIGLIAIGSAMSARTEAEATRPVQISGRRKVQ 427
            MGLFDIIGGAVLAPAALILSAVSLNVLKTVLAKLSEVANGATELNQPFDAALPAIKSLHMLLNERLFEKGVRTDFGSVLAMAAVIGLIAIGSAMSARTEAEATRPVQISGRRKVQ
Sbjct:    1 MGLFDIIGGAVLAPAALILSAVSLNVLKTVLAKLSEVANGATELNQPFDAALPAIKSLHMLLNERLFEKGVRTDFGSVLAMAAVIGLIAIGSAMSARTEAEATRPVQISGRRKVQ 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|93249 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7U8_9STRA3.240e-64100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:98609..101608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|93249|CE93248_191
Hectar predicted targeting categorysignal peptide
TranscriptId93571
TrackFilteredModels1
ProteinId93249
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|93249gene_9732Tribonema minus UTEX_B_3156 geneContig_81 98609..101608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|93249Trimin1|93249|CE93248_191Tribonema minus UTEX_B_3156 polypeptideContig_81 98865..101526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9732_5exon_9732_5Tribonema minus UTEX_B_3156 exonContig_81 98609..98891 -
exon_9732_4exon_9732_4Tribonema minus UTEX_B_3156 exonContig_81 99471..99507 -
exon_9732_3exon_9732_3Tribonema minus UTEX_B_3156 exonContig_81 100415..100589 -
exon_9732_2exon_9732_2Tribonema minus UTEX_B_3156 exonContig_81 101200..101277 -
exon_9732_1exon_9732_1Tribonema minus UTEX_B_3156 exonContig_81 101496..101608 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9732UTR3_9732Tribonema minus UTEX_B_3156 three_prime_UTRContig_81 98609..98864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9732CDS_9732Tribonema minus UTEX_B_3156 CDSContig_81 101496..101526 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9732UTR5_9732Tribonema minus UTEX_B_3156 five_prime_UTRContig_81 101527..101608 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Trimin1|93249|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=686bp|location=Sequence derived from alignment at Contig_81:98609..101608- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCGAACTACAGCACAGCGACAGCCAGCAACTCTTCTCGTCGGCAGAGC
ATCTTTCAGCACTCTCTTGCACTTGCACGACAATGGGCCTGTTCGACATC
ATCGGTGGAGCAGTGCTGGCGCCGGCGGCCCTGATTCTGTCAGCAGTTTC
GCTGAATGTCCTCAAAACAGTCCTGGCAAAGCTCAGCGAAGTGGCCAATG
GAGCGACGGAGCTGAACCAGCCATTTGATGCAGCCCTGCCAGCAATCAAA
TCACTGCACATGCTGCTGAACGAGCGGCTGTTTGAGAAGGGAGTGCGGAC
GGACTTTGGGAGTGTGCTGGCAATGGCGGCGGTGATTGGCTTGATTGCAA
TTGGATCAGCGATGAGCGCCCGGACGGAAGCGGAAGCGACCAGGCCAGTA
CAGATATCGGGCCGGAGGAAGGTGCAATGAGCAGACGCCTTTCCACTATG
CTAAGCCAGCATCTCGCGCAGTCAGGAGCTAGGGCCAACGTTTGGCCAGA
AGTTTCTGGTACACCATGAATGAATTGCGGCAGCTGCACACACGTTGCCT
TGTGCAACACGCCTTGGGGCTGTACGAACTTTGCATCTGGCAAGGGCTTC
CTTCCGCATGTCGCCAGCAGCAGCATGAACCGCTGCGCACATGCAGTGCA
TGGAAATGTCCTGTTAATTGAGATCACCATCCCGAG
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protein sequence of jgi.p|Trimin1|93249

>Trimin1|93249|CE93248_191 ID=Trimin1|93249|CE93248_191|Name=jgi.p|Trimin1|93249|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
MGLFDIIGGAVLAPAALILSAVSLNVLKTVLAKLSEVANGATELNQPFDA
ALPAIKSLHMLLNERLFEKGVRTDFGSVLAMAAVIGLIAIGSAMSARTEA
EATRPVQISGRRKVQ*
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mRNA from alignment at Contig_81:98609..101608-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Trimin1|93249|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3000bp|location=Sequence derived from alignment at Contig_81:98609..101608- (Tribonema minus UTEX_B_3156 )
GTTCGAACTACAGCACAGCGACAGCCAGCAACTCTTCTCGTCGGCAGAGC
ATCTTTCAGCACTCTCTTGCACTTGCACGACAATGGGCCTGTTCGACATC
ATCGGTGGAGCAGGTATGTGTCGCACGTTGCATGGGATGTAATTTCTTTC
GACGCAACAGACCTCCTGTTACTGTACACATTTTCCTCTCTGTGATGCCA
ATCCAGCATAGTCATGTCTACATAGTATTGGCCCTCAGCTCTGTTTAAAC
TATAGAGTGCACTTTTACGACTTGATCATTTACACCCAGTCTTGGTGTTG
TTTTGTGTCCCTCTTCTTGCTGTGTGTCCAGTGCTGGCGCCGGCGGCCCT
GATTCTGTCAGCAGTTTCGCTGAATGTCCTCAAAACAGTCCTGGCAAAGC
TCAGCGAAGGTGAGCGGCCCCTCATGCCCACTTAACAAGTGCCTGTTGCC
TGCCTGCGTGCTGCAACTAGCATTTTTCAGTTTCCGTCGCTTCCTGTCAA
CACAATGCTGCATGAGTGCATAGTGTATGTACACCAGTCGAACCATAAGT
TAGCAGTCAAATGGAACAAGCTGCATACCACCGCCAACTGAACTTTCGCT
CCTGATATCAGTGACAGTGACAGTTACTTCAGTTGCCTACTTCATGTGCC
AGACAAGCAAGTGTGTCAACACGGTTTGGCGGATACAGGTTGGCAAGTGT
TCTGGGGTGTGTGTGAAGGCTCTGCTGAAAGGGCTTTGCAGGCCAGAGCC
TCTCTGAGAAACCCGCTTGACCGACAACACTGCATCTCGCCACCGATTCT
CTGCGTCCTCTCCCGCTGTGGTTCAGTGTACGTCACTTCAAGAAGTAGTT
GATGTTGAGTTCAATGCTATATGTATGACTCATTGCGCCATATTGTGCCT
CTCATATCTGATGTTATGGCATCAAATCATGTGACGCTTTGCTAACTGTC
TGCAACTGCCTTCGCAACTGCCCTGACCTCTATGCCGCATTTCATGTTTG
TCCGTGTTTGACTCTGCAGTGGCCAATGGAGCGACGGAGCTGAACCAGCC
ATTTGATGCAGCCCTGCCAGCAATCAAATCACTGCACATGCTGCTGAACG
AGCGGCTGTTTGAGAAGGGAGTGCGGACGGACTTTGGGAGTGTGCTGGCA
ATGGCGGCGGTGATTGGCTTGATTGCAATTGGATCAGCGATGAGGTGAGG
TCTGCTGATCGTCAGCATTTAGGGTTAGGGTTAGGTGGCAGTTGAGGTTA
GGGTCAGGGTTAGGGTGATGGAAGTGCGCGCAAGAACACATGCTCAGTGT
TGTGCTCTGGTCCTGTACGTTCAAATGTGGCTGTACCGTATGTTACGGTA
TGTATGTGTGTTGCGTGTGAGCCCTGTCAGCAGTTGTACTTCCAGTTGAA
GTCTGGTCGCGAGAGTTTCAGAGCCTATACATCTGCATCTACATGTCTAT
ACATACCTGTTGTCATCACGTGCTAGCTTTGTGCAGAGCCGCTTGATGAC
TGTGTTGTGAGCTCGACGTGGAGCTAGCTTGTGCCACCACGCAATTGTGT
ACACTATGAAAAGTTTCATTGAAAACCAATGCAGCGAATCCCATGCATTC
ACCTGCTGCTGGCATTGTGATTAGAGCACTGCGGCAATCTTCTCTAGGTC
AACCAACAGTCAATGATGCCGATGAGGCGCAGTTCACACTCACCATCTAG
CAATTAGGCAAGGGATATGATATGTTCGGTCAGGGTCTATATGATATGTT
CGGCCAGCGTTGAGGGTTGTGACCGTTTTCTATTAGACTACCCCGCTAGT
GTTCTGACACGCACACCTCACACAGCCAGCTTGGGAGCTACAGCCAACCC
TGTGTGCGCGCATGCGTGTGCTTCAGGGTCTGTGCTATAGGTATGTATGT
ATGTGTCATCTTTCAGGGTGCGGGCCCAAATCATCGACGTACTTCCACTT
GTCACACATGCAGTAAAGGCAGGAAGAGTGTTTTCTGTACAGAGTAGCGT
TCTCATACCAATCACGCGTCGAAAGCGCCTATGGTTCGTTCATGCTGCAC
TGCGGTCATTGCATCTAATGGATTTCCTGTGATGCACGCCTGTGCAAACA
GCGCCCGGACGGAAGCGGAAGCGACCAGGCCAGTACAGGCAAGTTCACCA
GTGCGCTTGTGTGTACTGAACCATGTACTCTTAGTGTACTTTCTGTCATG
ATGGCTCAATGACGTGCCTGCCACAAAGACATTTCAAGTATTATGCGGCC
CATGCTTTTGCGTTCGCCCCGGCATCCTGCACTGGCGGAGTGCCGAGAAC
TGACATCTTGCAGAGATGATATGTCAGACATGTGTCGATGCTAACTTGAG
CAAGACAGTCAAAGAAATGGCACTGTGCCTGCAACTCCCCATACACATTG
TATCAAGTTCTGTGAGTGTGGACTGCGGTGATCGTCGCAGCTACTTACTG
TGACCCTGGCATTGTCTGTCAAGCCAGTCAGCCTGCGCTATGATGCAAAC
ATGGAAAGATACAGGAGTAGTTTTCTATCCCTGCCTCCGCCTTCCAGAAG
TGCATTATTAAGCTGAATTAAGCGCTGCGCCTGCCTCTGCCTTTCAGAAG
CACATTACTTAGCTGAAGTGAGTGCTGCCCTGCCTCTGCCTTCCATAAGC
ATGTTATTGCCAGAAGCATGCTATTTAGCTGACCTGAGCGCTGCCCCTGC
CTCCGCCATTCATGCAGATATCGGGCCGGAGGAAGGTGCAATGAGCAGAC
GCCTTTCCACTATGCTAAGCCAGCATCTCGCGCAGTCAGGAGCTAGGGCC
AACGTTTGGCCAGAAGTTTCTGGTACACCATGAATGAATTGCGGCAGCTG
CACACACGTTGCCTTGTGCAACACGCCTTGGGGCTGTACGAACTTTGCAT
CTGGCAAGGGCTTCCTTCCGCATGTCGCCAGCAGCAGCATGAACCGCTGC
GCACATGCAGTGCATGGAAATGTCCTGTTAATTGAGATCACCATCCCGAG
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Coding sequence (CDS) from alignment at Contig_81:98609..101608-

>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Trimin1|93249|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_81:98609..101608- (Tribonema minus UTEX_B_3156 )
ATGGGCCTGTTCGACATCATCGGTGGAGCAGTGCTGGCGCCGGCGGCCCT
GATTCTGTCAGCAGTTTCGCTGAATGTCCTCAAAACAGTCCTGGCAAAGC
TCAGCGAAGTGGCCAATGGAGCGACGGAGCTGAACCAGCCATTTGATGCA
GCCCTGCCAGCAATCAAATCACTGCACATGCTGCTGAACGAGCGGCTGTT
TGAGAAGGGAGTGCGGACGGACTTTGGGAGTGTGCTGGCAATGGCGGCGG
TGATTGGCTTGATTGCAATTGGATCAGCGATGAGCGCCCGGACGGAAGCG
GAAGCGACCAGGCCAGTACAGATATCGGGCCGGAGGAAGGTGCAATGA
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