mRNA_9722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129807
Unique NamemRNA_9722
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A836C9S5_9STRA (DUF547 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S5_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.370e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372
            VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS
Sbjct:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 124          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A836CH08_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH08_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.450e-45
Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQP---GGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366
            +V+FLDA  AL+W+ELP A      G D SERLALFLNLYHLMVLHAYLLVGPPGGAIKW +Y +GLSYE   DVLSLAELEH V+RA   P +Q+ +KL++PSE Y FAL+  EPR++FAL CG
Sbjct: 1201 LVDFLDATVALKWVELPAADEELSAGGDGSERLALFLNLYHLMVLHAYLLVGPPGGAIKWPAYFNGLSYEFAHDVLSLAELEHKVLRAPLTPPQQFMAKLVIPSEGYRFALTVPEPRISFALSCG 1325          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A835Z2G2_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.350e-42
Identity = 78/122 (63.93%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366
            +VEFLD  A LRWL+L     G  D SERLALFLNLYH++++HA+LLVGPPG A+K +SY + LSYE+ GDVLSLAELEH VIRA  +  +Q  SK  +PSE+YAFAL+A EPRV+FAL CG
Sbjct:   66 LVEFLDGTAQLRWLDLS----GPGDPSERLALFLNLYHVLLMHAHLLVGPPGSALKAASYFNSLSYEVAGDVLSLAELEHGVIRAPLSAPRQCLSKFFLPSERYAFALTAPEPRVSFALNCG 183          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 8.380e-33
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366
            ++ FLD    LRW+ L      G   SE+LA+FLNLYH+M+LHA+ ++GPPG  ++ +SY + L YE+GGDV+S+A+LEHCV+RA  +   Q+ SKL++P+ +Y F L   EPRV+FAL CG
Sbjct: 1483 LINFLDDICRLRWMPLE-----GLSHSEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVMRAKTSQPNQFLSKLIIPTTEYPFCLRRAEPRVSFALNCG 1599          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.560e-32
Identity = 60/122 (49.18%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366
            ++ FLD    LRW+ L      G   +E+LA+FLNLYH+M+LHA+ ++GPPG  ++ +SY + L YE+GGDV+S+A+LEHCV+RA  +   Q+ SKL++P+ +Y F+L   EPRV+FAL CG
Sbjct: 1390 LITFLDDICRLRWMPLE-----GLSHNEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVLRAKTSQPNQFLSKLIIPTTEYPFSLRRAEPRVSFALNCG 1506          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: B7FYB5_PHATC (tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB5_PHATC)

HSP 1 Score: 127 bits (318), Expect = 1.860e-31
Identity = 59/122 (48.36%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    7 EFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372
            +FL +AAAL+     RA   G  E  RLA FLN+YH M++HA+L++GPPG ++KW  Y + ++YE+G DV SL ELEHC+IR+  A   Q+ S+ ++P  +YAFAL+  + R+NFAL CG +
Sbjct:  819 QFLSSAAALK-----RANVRGLPEESRLAFFLNVYHTMIMHAFLVLGPPGSSLKWIGYFNNIAYEVGDDVFSLTELEHCIIRSKMAYPSQFISRFVLPKSQYAFALTKADYRINFALNCGST 935          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7S4AZD2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AZD2_CHRCT)

HSP 1 Score: 118 bits (295), Expect = 4.750e-29
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372
            V+ FLD AA     EL   +P   DE+ R A FLNLYHLMV HAYLL+GPP  ++K  SY +  +YE G DV S+AELEHCV+RA  +  + + +KL++P   Y  ALS  + R+NFA+ CG +
Sbjct:   95 VLAFLDLAA-----ELKHCRPSEFDENTRKAFFLNLYHLMVNHAYLLIGPPSSSLKSISYFNKFAYECGEDVFSMAELEHCVLRAPMSRPRSFVTKLVLPKATYPCALSVADCRLNFAISCGSA 213          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7S3SJG3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SJG3_EMIHU)

HSP 1 Score: 115 bits (289), Expect = 1.070e-28
Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372
            +V FLDAA++L+ + L      G DE ++LA FLN+YH M+ HAY L+GPP   +K  S+ + ++Y++GGDV +LAELEH V+RA +   K + SK ++P   Y+FAL+  + R+NFAL CG +
Sbjct:   91 LVAFLDAASSLKAVRLD-----GLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCGSA 209          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: R1DA17_EMIHU (DUF547 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA17_EMIHU)

HSP 1 Score: 115 bits (289), Expect = 1.480e-27
Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372
            +V FLDAA++L+ + L      G DE ++LA FLN+YH M+ HAY L+GPP   +K  S+ + ++Y++GGDV +LAELEH V+RA +   K + SK ++P   Y+FAL+  + R+NFAL CG +
Sbjct:  840 LVAFLDAASSLKAVRLD-----GLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCGSA 958          
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7R9Y7B0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7B0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.390e-27
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366
            + EFLD  + L  L+L           E++  F+N YHL+++HAYL++GPP  A KW+ Y + ++YE G D+ SLAELEH +IRA  A   Q+ SKL++P+  Y +AL+  E R+NF L CG
Sbjct:   36 LTEFLDGVSCLAKLDLQVL-----SHLEKVCFFVNTYHLLLMHAYLVLGPPRQAAKWARYFNAIAYECGDDIFSLAELEHNIIRAPMAAPSQFLSKLVLPTSVYKYALTEPEMRINFVLNCG 152          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9S5_9STRA3.370e-83100.00DUF547 domain-containing protein (Fragment) n=1 Ta... [more]
A0A836CH08_9STRA2.450e-4566.40DUF547 domain-containing protein n=1 Tax=Tribonema... [more]
A0A835Z2G2_9STRA1.350e-4263.93DUF547 domain-containing protein n=1 Tax=Tribonema... [more]
D8LMK0_ECTSI8.380e-3350.00DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KCR6_9PHAE1.560e-3249.18DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
B7FYB5_PHATC1.860e-3148.36tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4AZD2_CHRCT4.750e-2949.19Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3SJG3_EMIHU1.070e-2845.97Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1DA17_EMIHU1.480e-2745.97DUF547 domain-containing protein n=1 Tax=Emiliania... [more]
A0A7R9Y7B0_9STRA9.390e-2744.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:762165..763444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129807|gw1.66.14.1
DescriptionProtein of unknown function, DUF547
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs29I52@1|root,2RRC0@2759|Eukaryota,2XF57@2836|Bacillariophyta
Evalue3.05e-32
Seed ortholog2850.Phatr45626
Hectar predicted targeting categoryother localisation
TranscriptId130129
TrackFilteredModels1
ProteinId129807
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129807gene_9722Tribonema minus UTEX_B_3156 geneContig_66 762165..763444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129807Trimin1|129807|gw1.66.14.1Tribonema minus UTEX_B_3156 polypeptideContig_66 762165..763444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9722_2exon_9722_2Tribonema minus UTEX_B_3156 exonContig_66 762165..762315 -
exon_9722_1exon_9722_1Tribonema minus UTEX_B_3156 exonContig_66 763224..763444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9722CDS_9722Tribonema minus UTEX_B_3156 CDSContig_66 763224..763444 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGTGGAGTTCCTGGACGCGGCAGCAGCGCTCAGGTGGCTGGAGCTGCC
GCGCGCGCAGCCCGGCGGCGCGGACGAGTCGGAGCGTCTCGCGCTGTTTC
TGAACCTGTACCACCTCATGGTGCTGCACGCGTACCTGCTGGTCGGACCG
CCGGGCGGCGCCATCAAGTGGAGCAGCTATCTCAGCGGGCTGAGCTACGA
AATCGGCGGCGACGTGCTCAGTCTCGCGGAGCTGGAGCACTGCGTGATCC
GCGCGGCGGCGGCGCCCGCCAAGCAGTACCCCAGCAAACTGCTCGTCCCC
TCGGAGAAGTACGCGTTCGCGCTGAGCGCTGTGGAGCCGCGCGTCAACTT
TGCGCTGTGCTGCGGCGGCTCC
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protein sequence of jgi.p|Trimin1|129807

>Trimin1|129807|gw1.66.14.1 ID=Trimin1|129807|gw1.66.14.1|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp
VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGP
PGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVP
SEKYAFALSAVEPRVNFALCCGGS
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mRNA from alignment at Contig_66:762165..763444-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1280bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )
GTGGTGGAGTTCCTGGACGCGGCAGCAGCGCTCAGGTGGCTGGAGCTGCC GCGCGCGCAGCCCGGCGGCGCGGACGAGTCGGAGCGTCTCGCGCTGTTTC TGAACCTGTACCACCTCATGGTGCTGCACGCGTACCTGCTGGTCGGACCG CCGGGCGGCGCCATCAAGTGGAGCAGCTATCTCAGCGGGCTGAGCTACGA AATCGGCGGCGACGTGCTCAGGTGCGCGCATGCACCGGCAGCGAGGGTCG AGCGTAGAGGTAGGGTTAAGTTTGAGGCTGGGGCTGCGCAGGGCCCTGGT TGGTGGTGTGGTGAGGGTTGGGGCCAGTGACGAAGGCGGCAGAGGGCGGG CGTTGTGCGCTCAAGTATGGAGTAGCTACCTGAGCGGGCTGAGCTATGGA ATCGGCGGCAACGTTCTGAGGTCAGCGAACGGCGTGCGCGAAGGGCGTGC ACGCGTATTGTTGCGCGCCGAGGTGCTTCATTGGGAGTGCTGTGCTGCCA CCGTCGGAGCTGCTTATTGGGAGTGCTGTACTGCAAGCCAGAGATCGGAT GCGCTGCGTGCCGACGGGGGGCGGTGACAGGGGTGCAACGGCACCCCCCC GGGTCTGTCGCACATTAGCACAGAAAGTGCTGCATACCGGTCCCAAACTG CACATGTATCGACGAGCTGTCCGCGAATTTTGCCGTTGCAAGCTTCAATC TCCACTGCGGTGCCGCGGCGAGCTTGCTGTTGCCGGCCGCTTGATACCAT CAGCGTCATTCAGTCGACAGCGGCACCGGCCACGCGCGTGCCCCCGACAC TACCCTCCATGCGTAATTGTCAACTTCATCTCCGGGGGGCAGGGCCAGGT CTGTTGCATGCCCCATCCGTTGCGGTGCACCGGTTACACTGTCGCGACCG CGCGCACATGTCACCGTCAGTTCAGTCTTGGCTGCATCTCAAATGCACTT TCTGCCCCGGCCCCTACATCCCACCTCACCCGTCTACGTCCTTGATGTGA AGTGCTACCATCCTCTCCCAGTTGATCAAACGACGCACCCAATCGCTCAT TGGCCGATCTAAACCTCAACATCTCCTCTACAGCCGCATTGGCTGACTCC TCCCCCCCACCCACCCACCCCCCCCCCAGTCTCGCGGAGCTGGAGCACTG CGTGATCCGCGCGGCGGCGGCGCCCGCCAAGCAGTACCCCAGCAAACTGC TCGTCCCCTCGGAGAAGTACGCGTTCGCGCTGAGCGCTGTGGAGCCGCGC GTCAACTTTGCGCTGTGCTGCGGCGGCTCC
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Coding sequence (CDS) from alignment at Contig_66:762165..763444-

>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )
GTGGTGGAGTTCCTGGACGCGGCAGCAGCGCTCAGGTGGCTGGAGCTGCC
GCGCGCGCAGCCCGGCGGCGCGGACGAGTCGGAGCGTCTCGCGCTGTTTC
TGAACCTGTACCACCTCATGGTGCTGCACGCGTACCTGCTGGTCGGACCG
CCGGGCGGCGCCATCAAGTGGAGCAGCTATCTCAGCGGGCTGAGCTACGA
AATCGGCGGCGACGTGCTCAGTCTCGCGGAGCTGGAGCACTGCGTGATCC
GCGCGGCGGCGGCGCCCGCCAAGCAGTACCCCAGCAAACTGCTCGTCCCC
TCGGAGAAGTACGCGTTCGCGCTGAGCGCTGTGGAGCCGCGCGTCAACTT
TGCGCTGTGCTGCGGCGGCTCC
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