mRNA_9722 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A836C9S5_9STRA (DUF547 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S5_9STRA) HSP 1 Score: 248 bits (632), Expect = 3.370e-83 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS Sbjct: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 124
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A836CH08_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH08_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.450e-45 Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQP---GGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366 +V+FLDA AL+W+ELP A G D SERLALFLNLYHLMVLHAYLLVGPPGGAIKW +Y +GLSYE DVLSLAELEH V+RA P +Q+ +KL++PSE Y FAL+ EPR++FAL CG Sbjct: 1201 LVDFLDATVALKWVELPAADEELSAGGDGSERLALFLNLYHLMVLHAYLLVGPPGGAIKWPAYFNGLSYEFAHDVLSLAELEHKVLRAPLTPPQQFMAKLVIPSEGYRFALTVPEPRISFALSCG 1325
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A835Z2G2_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G2_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.350e-42 Identity = 78/122 (63.93%), Postives = 95/122 (77.87%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366 +VEFLD A LRWL+L G D SERLALFLNLYH++++HA+LLVGPPG A+K +SY + LSYE+ GDVLSLAELEH VIRA + +Q SK +PSE+YAFAL+A EPRV+FAL CG Sbjct: 66 LVEFLDGTAQLRWLDLS----GPGDPSERLALFLNLYHVLLMHAHLLVGPPGSALKAASYFNSLSYEVAGDVLSLAELEHGVIRAPLSAPRQCLSKFFLPSERYAFALTAPEPRVSFALNCG 183
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI) HSP 1 Score: 130 bits (328), Expect = 8.380e-33 Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366 ++ FLD LRW+ L G SE+LA+FLNLYH+M+LHA+ ++GPPG ++ +SY + L YE+GGDV+S+A+LEHCV+RA + Q+ SKL++P+ +Y F L EPRV+FAL CG Sbjct: 1483 LINFLDDICRLRWMPLE-----GLSHSEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVMRAKTSQPNQFLSKLIIPTTEYPFCLRRAEPRVSFALNCG 1599
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.560e-32 Identity = 60/122 (49.18%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366 ++ FLD LRW+ L G +E+LA+FLNLYH+M+LHA+ ++GPPG ++ +SY + L YE+GGDV+S+A+LEHCV+RA + Q+ SKL++P+ +Y F+L EPRV+FAL CG Sbjct: 1390 LITFLDDICRLRWMPLE-----GLSHNEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVLRAKTSQPNQFLSKLIIPTTEYPFSLRRAEPRVSFALNCG 1506
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: B7FYB5_PHATC (tRNA-intron lyase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB5_PHATC) HSP 1 Score: 127 bits (318), Expect = 1.860e-31 Identity = 59/122 (48.36%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 7 EFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372 +FL +AAAL+ RA G E RLA FLN+YH M++HA+L++GPPG ++KW Y + ++YE+G DV SL ELEHC+IR+ A Q+ S+ ++P +YAFAL+ + R+NFAL CG + Sbjct: 819 QFLSSAAALK-----RANVRGLPEESRLAFFLNVYHTMIMHAFLVLGPPGSSLKWIGYFNNIAYEVGDDVFSLTELEHCIIRSKMAYPSQFISRFVLPKSQYAFALTKADYRINFALNCGST 935
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7S4AZD2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AZD2_CHRCT) HSP 1 Score: 118 bits (295), Expect = 4.750e-29 Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372 V+ FLD AA EL +P DE+ R A FLNLYHLMV HAYLL+GPP ++K SY + +YE G DV S+AELEHCV+RA + + + +KL++P Y ALS + R+NFA+ CG + Sbjct: 95 VLAFLDLAA-----ELKHCRPSEFDENTRKAFFLNLYHLMVNHAYLLIGPPSSSLKSISYFNKFAYECGEDVFSMAELEHCVLRAPMSRPRSFVTKLVLPKATYPCALSVADCRLNFAISCGSA 213
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7S3SJG3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SJG3_EMIHU) HSP 1 Score: 115 bits (289), Expect = 1.070e-28 Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372 +V FLDAA++L+ + L G DE ++LA FLN+YH M+ HAY L+GPP +K S+ + ++Y++GGDV +LAELEH V+RA + K + SK ++P Y+FAL+ + R+NFAL CG + Sbjct: 91 LVAFLDAASSLKAVRLD-----GLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCGSA 209
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: R1DA17_EMIHU (DUF547 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA17_EMIHU) HSP 1 Score: 115 bits (289), Expect = 1.480e-27 Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCGGS 372 +V FLDAA++L+ + L G DE ++LA FLN+YH M+ HAY L+GPP +K S+ + ++Y++GGDV +LAELEH V+RA + K + SK ++P Y+FAL+ + R+NFAL CG + Sbjct: 840 LVAFLDAASSLKAVRLD-----GLDEEQKLAFFLNVYHTMIQHAYSLLGPPSSLLKAISFFNTIAYQVGGDVFTLAELEHNVLRAPSCRPKSFFSKWVLPKSSYSFALTTADYRLNFALSCGSA 958
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Match: A0A7R9Y7B0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7B0_9STRA) HSP 1 Score: 108 bits (271), Expect = 9.390e-27 Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 1 VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPPGGAIKWSSYLSGLSYEIGGDVLSLAELEHCVIRAAAAPAKQYPSKLLVPSEKYAFALSAVEPRVNFALCCG 366 + EFLD + L L+L E++ F+N YHL+++HAYL++GPP A KW+ Y + ++YE G D+ SLAELEH +IRA A Q+ SKL++P+ Y +AL+ E R+NF L CG Sbjct: 36 LTEFLDGVSCLAKLDLQVL-----SHLEKVCFFVNTYHLLLMHAYLVLGPPRQAAKWARYFNAIAYECGDDIFSLAELEHNIIRAPMAAPSQFLSKLVLPTSVYKYALTEPEMRINFVLNCG 152 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129807 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=372bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGGTGGAGTTCCTGGACGCGGCAGCAGCGCTCAGGTGGCTGGAGCTGCCback to top protein sequence of jgi.p|Trimin1|129807 >Trimin1|129807|gw1.66.14.1 ID=Trimin1|129807|gw1.66.14.1|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=124bp VVEFLDAAAALRWLELPRAQPGGADESERLALFLNLYHLMVLHAYLLVGPback to top mRNA from alignment at Contig_66:762165..763444- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1280bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:762165..763444- >mRNA_9722 ID=mRNA_9722|Name=jgi.p|Trimin1|129807|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=372bp|location=Sequence derived from alignment at Contig_66:762165..763444- (Tribonema minus UTEX_B_3156 )back to top |