mRNA_9684 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A835YLS6_9STRA (UNC-like C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS6_9STRA) HSP 1 Score: 343 bits (880), Expect = 1.380e-119 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query: 1 MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS
Sbjct: 1 MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 168
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: D8LTA6_ECTSI (SUN domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA6_ECTSI) HSP 1 Score: 244 bits (622), Expect = 6.950e-79 Identity = 113/168 (67.26%), Postives = 140/168 (83.33%), Query Frame = 1
Query: 1 MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
MVPD E+ + + K L+NYAS+DSGAV++E SP +KG NLL+DSKDKY ISPCE+KQW V+GLSEDILVR++ +GS+EKYS ++KEFQVLASQ++PV+ W+DLG FTA GEQTFE+P PAFARYLKFK LSHYGD++YCT+S V+VHGSTMLESF +WQ S
Sbjct: 15 MVPDVEDDGAKQPKRVNLQNYASRDSGAVLLEASPASKGMQNLLLDSKDKYAISPCEDKQWAVLGLSEDILVRSLVIGSHEKYSSLLKEFQVLASQTYPVNEWLDLGTFTAKFVQGEQTFEIPQPAFARYLKFKFLSHYGDEFYCTVSQVKVHGSTMLESFQHEWQQS 182
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A6H5JRG7_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE) HSP 1 Score: 239 bits (609), Expect = 5.390e-70 Identity = 110/160 (68.75%), Postives = 135/160 (84.38%), Query Frame = 1
Query: 25 DSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
D A+ K L+NYAS+DSGAV++E SP +KG NLL+DSKDKY ISPCE+KQW V+GLSEDILVR++ +GS+EKYS ++KEFQVLASQ++PV+ W+DLG FTA GEQTFE+P PAFARYLKFK LSHYGD++YCT+S V+VHGSTMLESF +WQ S
Sbjct: 198 DGAQPKRVNLQNYASRDSGAVLLEASPASKGMQNLLLDSKDKYAISPCEDKQWAVLGLSEDILVRSLVIGSHEKYSSLLKEFQVLASQTYPVNEWLDLGTFTAKFVQGEQTFEIPQPAFARYLKFKFLSHYGDEFYCTVSQVKVHGSTMLESFQHEWQQS 357
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: B8CB42_THAPS (SUN domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB42_THAPS) HSP 1 Score: 194 bits (492), Expect = 3.720e-54 Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = 1
Query: 52 LKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDN--WMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDW 495
L +YASK +GA ++E SP KG NLL DKY I+PCEEK++VVIGLSEDILV+ IKL +YE+YS V+EFQVLASQ +P + W DLG +TA GEQTFEL PA+ARYLKF+ +SHYG ++YCTLS ++VHGSTML+ FHE W
Sbjct: 306 LVDYASKLAGAQILEKSPSLKGTSNLLTGDIDKYAIAPCEEKKYVVIGLSEDILVKRIKLSNYERYSSHVREFQVLASQEYPAPSEYWNDLGTYTALSKSGEQTFELNEPAWARYLKFRFMSHYGKEHYCTLSQIKVHGSTMLQGFHEQW 455
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A7S2UMH9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMH9_9STRA) HSP 1 Score: 184 bits (466), Expect = 3.290e-52 Identity = 81/149 (54.36%), Postives = 114/149 (76.51%), Query Frame = 1
Query: 58 NYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
+YA+K SGA+++E SP KG+ NLL D D+Y I+PCE+K++VV+GLSEDILV+ + L +YE+YS VKEF + S + + +W ++G FTA +GEQ+F+L P +ARYLKF+ +HYG ++YCTLS ++VHGSTML+ FHE WQAS
Sbjct: 175 DYANKSSGALILEKSPTMKGSSNLLNDDMDRYAIAPCEDKKYVVVGLSEDILVKQVFLANYERYSSHVKEFTIFGSTTMLMGDWAEVGTFTAKPRNGEQSFDLTEPVWARYLKFRFTTHYGSEHYCTLSQIKVHGSTMLQGFHEQWQAS 323
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A7S4IV93_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IV93_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.410e-50 Identity = 82/146 (56.16%), Postives = 113/146 (77.40%), Query Frame = 1
Query: 58 NYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDW 495
+YA+K+SGA+++E SP KG NLL D+Y I+PCE++++VV+GLSEDILV+ IKL +YE+YS +EFQVL SQ+ +W DLG F A +GEQ+FEL PA+ARYLKF+LL+HYG ++YCT++ ++VHGSTM + FHE W
Sbjct: 133 DYANKNSGAIILEKSPSMKGTSNLLKSDNDQYAIAPCEDRKFVVVGLSEDILVKQIKLSNYERYSSHPREFQVLGSQTNTGSDWADLGTFIADPGNGEQSFELDEPAWARYLKFRLLTHYGAEHYCTVTQIKVHGSTMTQGFHEQW 278
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A7S1D9Q2_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9Q2_CYCTE) HSP 1 Score: 180 bits (457), Expect = 1.520e-49 Identity = 84/149 (56.38%), Postives = 115/149 (77.18%), Query Frame = 1
Query: 58 NYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
+YAS +GA+++E SP KG NLL +KDKY ISPCEEK++VVIGLSEDILV+ + L +YE+YS VK+FQ+L SQ+ + W++LG +TA +G+Q F+L P++ARYLKF+ LSHYG ++YCT+S + VHGST L+ FHE+WQ S
Sbjct: 219 DYASTTAGALILEKSPHMKGTSNLLNGNKDKYAISPCEEKKFVVIGLSEDILVKQVCLANYERYSSRVKDFQILGSQT--MGKWVNLGTYTADPNNGQQKFDLGQPSWARYLKFRFLSHYGSEHYCTISQIMVHGSTQLQGFHEEWQDS 365
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A7S3GXC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC2_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.080e-46 Identity = 86/173 (49.71%), Postives = 120/173 (69.36%), Query Frame = 1
Query: 1 MVPDKEEGDSAKLKP---TKLKNYASKDSGAVMMEHSPGT-KGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELP-SPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQAS 504
+V DK++ D A K K+ N+AS+ +GAV+++ SP + KG LL D KDKY ISPCEEK+WVVIGLSEDIL+ +I++ +YEKYS +K+FQ+LAS S+P D W++LG +TA G Q F + + A RYLK K L+HY D+ CTLS ++V G T++ SF ++ Q S
Sbjct: 27 IVKDKDDDDEANTKAKRAVKMFNFASQSAGAVILDKSPASAKGFHYLLNDDKDKYGISPCEEKKWVVIGLSEDILITSIEVSNYEKYSSTLKDFQLLASYSYPTDEWINLGQYTAKPQLGAQLFNVTDNEAHTRYLKVKFLTHYSDEALCTLSQIKVFGVTVIASFQQEVQRS 199
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A7S1TP62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP62_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.440e-46 Identity = 75/146 (51.37%), Postives = 107/146 (73.29%), Query Frame = 1
Query: 58 NYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCE-EKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHED 492
NYASK++GA+ + SP KGA LL ++DKY I PC E++WVVIGLSEDI+V++ + ++E+YS + E ++LA+ ++P + W DLGV+ A GEQTFE+P A+ARYLK + LSH+G +YYCTLS V+VHG T++E+ D
Sbjct: 44 NYASKEAGALSLGSSPALKGASALLEKNQDKYAIVPCTAEERWVVIGLSEDIMVKSFSMANFEQYSSMFHEVRLLAATTYPTEKWADLGVYAAEFVRGEQTFEVPGGAWARYLKLEFLSHHGVEYYCTLSEVKVHGETLVENLKTD 189
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Match: A0A8J2WR33_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WR33_9STRA) HSP 1 Score: 167 bits (422), Expect = 5.840e-46 Identity = 83/166 (50.00%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 1 MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQVLASQSFPVDNWMDLGVFTAADAHGEQTFELPSPAFARYLKFKLLSHYGDDYYCTLSHVRVHGSTMLESFHEDWQ 498
MV D ++ D A P K+ NYASKD+GA+++E S +KG DNLLVD+KDKY I+ C EK++VVIGLSEDI + + L YEKYS V++F VL SQ+FP W+ LG F A A EQ F P P + RY+K + +H+GD+ CT+S ++VHG T++E +D Q
Sbjct: 75 MVQDVDDEDDAPAAPKKVINYASKDAGALVVEKSGTSKGFDNLLVDNKDKYGITDCGEKKYVVIGLSEDIRMTELILCQYEKYSSGVRDFDVLGSQTFPTKEWLHLGAFEATYAKREQLFVFPDPKYVRYIKVRFNTHHGDEASCTVSQLKVHGITVMEGMQDDLQ 240 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129357 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9684 ID=mRNA_9684|Name=jgi.p|Trimin1|129357|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_66:433063..433965- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTACCAGACAAGGAGGAGGGCGACTCCGCCAAGCTCAAGCCCACCAAback to top protein sequence of jgi.p|Trimin1|129357 >Trimin1|129357|gw1.66.6.1 ID=Trimin1|129357|gw1.66.6.1|Name=jgi.p|Trimin1|129357|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp MVPDKEEGDSAKLKPTKLKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKback to top mRNA from alignment at Contig_66:433063..433965- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9684 ID=mRNA_9684|Name=jgi.p|Trimin1|129357|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=903bp|location=Sequence derived from alignment at Contig_66:433063..433965- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:433063..433965- >mRNA_9684 ID=mRNA_9684|Name=jgi.p|Trimin1|129357|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_66:433063..433965- (Tribonema minus UTEX_B_3156 )back to top |