mRNA_9677 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133470
Unique NamemRNA_9677
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A836C9Q7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q7_9STRA)

HSP 1 Score: 500 bits (1287), Expect = 7.530e-179
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 CAIKSCGRPATHGVTIRFCEDHYKEFRQVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 756
            CAIKSCGRPATHGVTIRFCEDHYKEFRQVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK
Sbjct:    1 CAIKSCGRPATHGVTIRFCEDHYKEFRQVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 252
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7S2SCH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.550e-83
Identity = 129/253 (50.99%), Postives = 179/253 (70.75%), Query Frame = 1 
Query:    1 CAIKSCGRPATHGVTIRFCEDHYKEFR-QVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 756
            C+I  C  P T G++++FCE+HYKEFR QV +  D+E ++AT  L  Q+A+LK QL + G   +E V+L+ A+E+MQ+AV +LMAGDE AEKDI++WD  I+M+P+Y +EQEE+A++W  DN   N++A   MR  VPPDI   S+  +   G+P   AKR+W  K+L  +R HP DI  +H ADL+  Y NQGLD++EMRAVW  +P++F+ D D KKA+WR  F QKL+ELTTKE    L+RNE+RN A+K
Sbjct:   28 CSITGCLHPGTKGISMKFCEEHYKEFREQVKSTNDEEEETAT--LQKQVAMLKHQLKAVGAEPVECVTLDVAREKMQEAVQRLMAGDEMAEKDIEKWDTAIKMNPEYQQEQEEKARKWAEDNKEKNEEACRTMRGLVPPDIKQCSLKTLMERGLPRALAKRLWDKKILWMLRMHPLDIALIHQADLRAKYPNQGLDIIEMRAVWTVLPEDFENDGDGKKAEWRFNFRQKLEELTTKEEQNRLARNEKRNNAYK 278
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7R9U3A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3A9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 8.850e-49
Identity = 99/197 (50.25%), Postives = 129/197 (65.48%), Query Frame = 1 
Query:    1 CAIKSCGRPATHGVTIRFCEDHYKEFRQVM--APKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAA------EGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTY 567
            C+IK C RPATHGV+IRFCE HY EFR+    +  +KE    T  L  QI LLK+QL + G+   EFV LETA++ M +AV +LM GDE+AEKDI+RWDK IRM+P+Y +EQE   K W        +++L +MR FVPPDI + S+  + A      E +P   AKR+W  K+L  VR HPD+I+K HIADL+  Y
Sbjct: 1459 CSIKGCPRPATHGVSIRFCEMHYLEFRKQFKESQAEKEDSEQTDTLQKQIDLLKRQLEAAGEQPAEFVDLETARKNMHEAVQRLMEGDEAAEKDIERWDKAIRMNPEYQEEQEREKKAWLESERPKWEESLRIMRGFVPPDIFSMSLPTLKAVTMPSGEPLPTAFAKRLWSKKILWLVRAHPDNIRKYHIADLRGKY 1655
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7S2R6X4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6X4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.270e-40
Identity = 87/209 (41.63%), Postives = 137/209 (65.55%), Query Frame = 1 
Query:  142 IALLKKQLASTGQVAL-EFVSLETAKERMQQAVTKLMAGD---ESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 756
            IA+L KQL S G  A+ E VSL+ A+  +Q+A+ +LM+G+   ++A+ + D+WD+ +R HP++  +++ + + W+      N  AL LMR FVPP+I +SS+  +   G+P+   KR+W+ KVL   R   D I ++H+ADL   YS QGLD++E+RAVWAA+P++F+ D D +KA WRL    +L+EL + E  G LS   RR+ ++K
Sbjct:  246 IAMLIKQLESHGDQAITEVVSLDKAQASLQEALGQLMSGEGNLDAAQAEFDKWDRFVRNHPEFIAQEQAKREAWDQAQAPLNTSALQLMRTFVPPNIWSSSLTTLKDSGLPSGLVKRLWEKKVLWLTRAPKDFIARIHVADLNMKYSIQGLDLMELRAVWAALPEKFENDGDDRKAGWRLKIHDRLKELVSSEDRGSLSGPLRRHASYK 454
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7S2RMF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMF6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.040e-39
Identity = 86/196 (43.88%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:  139 QIALLKKQLASTGQVAL-EFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGML 723
            QI +LK QL + G   + E VSLE AK+R+++AV +++ G+E A+ D D+WD+ IR HP++ +EQ+  A++WE  N   N+QAL  +R FVPPDI  +++  +   GV    AKR+W  K+L W R  P  I K H ADL+  ++ QGLD+ E+RAV A +PQ FD DS   K +WR  F  KL+E+  +E    L
Sbjct:  659 QIEMLKLQLKNAGVKPIDEVVSLEEAKQRLKRAVEQMIGGNEDAQVDFDKWDEYIRCHPEHKEEQQRLAREWEEKNREKNEQALRALRTFVPPDIYYATLDGLKLRGVQTPLAKRLWDRKILWWCRSEPSIIAKTHAADLKVKFAFQGLDLRELRAVSAMLPQTFDNDSTGDKKKWRENFMTKLKEMVQQEEQNRL 854
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: D7FM20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM20_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.240e-36
Identity = 85/208 (40.87%), Postives = 127/208 (61.06%), Query Frame = 1 
Query:  142 IALLKKQLASTGQVALE-FVSLETAKERMQQAVTKLMAGDESAEKDI--DRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 756
            I+ L++QL + G+  +E  V+LE AK+R+++A+  LMAGD SAE ++  ++WDK +  HPD+ KEQ    + WEA N   N +AL LM+ FVPPDI  + +  +   G+    AKR++  KVL  +R     + K H+ +L++ Y    LDVVE RA+ A +P  F+ D+D  K  WR  F ++L+EL  KEA+G L   E R P +K
Sbjct:   34 ISTLRRQLTALGEQPIEEVVTLEEAKKRLREAIDALMAGDASAEMELALEKWDKYVTNHPDHIKEQAAEEQAWEAANEPKNNEALHLMKTFVPPDIFHAGLDGLRGGGLTPALAKRMFDRKVLWLIRAPIGMVSKTHVVELKSKYLANDLDVVESRALHACLPSTFENDADGAKTAWRAGFRKRLKELLDKEAAGQLKPAELRRPVYK 241
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7S2DCR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCR7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.120e-34
Identity = 76/208 (36.54%), Postives = 121/208 (58.17%), Query Frame = 1 
Query:  112 DSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDI--GASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSR 729
            D     L  Q+++L  QL + G   +E V L  A+  ++ A+  LMAGDES E ++++WD  +R HPD+   +    K W+ +     ++AL  +RK++P D+   A+SI  +   G+  + AKRI   + L  VR HPDDI K+HIADL+  YS  GL+ +E+RA++A  P EF  D   +KA WR    +K+Q+L  + ++  ++R
Sbjct:  224 DEDKIQLEQQVSMLTTQLKAVGVAPVECVPLAEAQANLEAAIAALMAGDESKEPEVEKWDAAVRNHPDHIAAKAAELKAWQDEEAPRAKEALRELRKYLPTDVVGSAASIVALQNRGLSKLLAKRINSKRALTLVRMHPDDIAKIHIADLRGKYSLYGLETMELRAIYANAPSEFQNDGSGEKAAWRAELIEKVQKLQKETSNSRMNR 431
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A7S3K3I4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3I4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.100e-33
Identity = 72/189 (38.10%), Postives = 112/189 (59.26%), Query Frame = 1 
Query:  187 LEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAW 753
            +E+V+LE A+ R + A+      D +       W   I++HP+Y + Q    + WE        +AL +MR F+PP     ++ K+   G+    A+RI +++ LH VR HPDDI K+H ADL  TY++ GLD++E+RA++A +P  FD D D KKA+WR     KL+ L T+E++G L++NE R  A+
Sbjct:    1 MEYVTLEKAENRFRAALEAENYDDAAL------WGDIIKVHPEYIEAQRRENEAWEIKIKPKCDEALTIMRTFIPPTPTKWTLDKLVEAGLSLALARRIRRMRALHLVRLHPDDIAKIHAADLTHTYASSGLDIIELRAMYAVLPASFDADPDGKKAKWRDAVRDKLKGLETRESAGTLTKNEIRAGAY 183
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A812RDG1_SYMMI (Nphp3 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RDG1_SYMMI)

HSP 1 Score: 134 bits (338), Expect = 2.860e-32
Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = 1 
Query:  142 IALLKKQLASTG-QVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKE 708
            I +L  Q+ S G +   E V+   A++R+Q A+ +LM GDE A KD D+WD+ +R HP+Y  ++  R  +W  +NL  N  AL  +R  VPP I + +++ M  E +P   AKR+W  K L   R  P+ I ++HIADLQT YS QGLD +E+RAV+A++P  F+ D    KA W+    Q LQ    +E
Sbjct:  608 IDILTNQVVSLGVEPIAEVVTFPKAEQRLQSALVRLMEGDEEAAKDFDKWDQFVRNHPEYKVKEVARKLKWTRENLPINAAALRHIRGLVPPSIVSGTLS-MLEEKLPPAIAKRVWSKKALWLTRIAPNRIGRLHIADLQTKYSTQGLDEIELRAVFASLPDTFENDGKGDKAAWKDGVLQSLQSKCKQE 796
[Close]
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Match: A0A8J2X0D2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.310e-31
Identity = 88/243 (36.21%), Postives = 132/243 (54.32%), Query Frame = 1 
Query:   82 QVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKER---------MQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAK---------MAAEGVPAVA-AKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAW 753
            +  +P    P  A  N   +IA L+  +A+  +  L  V   T K++         ++ A  + + GD SAE +++R D  +R HPD+   Q +    W+++   AN  ALAL R  VPPDI   S AK         + ++  PA+A A+R+W  K L  VR   + ++K H+ADL+ TY+  GLD+VE+RAV+A +P+EF  D D  KA WR    +KL  +  KEASG L+  E+RN A+
Sbjct:  361 EATSPLHARPSEAQVNTSKRIAELEATVAAL-RSELNRVKKPTEKQQQSIDDIESELRAATARCLQGDPSAESELERLDAALRAHPDHKIRQAKARANWDSEQRTANNNALALTRSLVPPDI-LKSTAKDVGLRICDALQSDDKPALALARRVWSAKALRAVRAPSELLRKAHVADLRGTYTPTGLDIVELRAVYACLPREFANDGDGAKAAWRESVREKLVAMVAKEASGSLTPAEKRNSAY 601
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9Q7_9STRA7.530e-179100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2SCH3_9STRA2.550e-8350.99Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9U3A9_9STRA8.850e-4950.25Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2R6X4_9STRA3.270e-4041.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RMF6_9STRA1.040e-3943.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FM20_ECTSI6.240e-3640.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2DCR7_9STRA5.120e-3436.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3K3I4_9STRA1.100e-3338.10Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812RDG1_SYMMI2.860e-3241.05Nphp3 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A8J2X0D2_9STRA3.310e-3136.21Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:349158..354131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133470|gw1.66.47.1
Max annot lvl2759|Eukaryota
EggNOG OGs2ENCT@1|root,2SRUE@2759|Eukaryota
Evalue1.02e-36
Seed ortholog2880.D7FM20
Hectar predicted targeting categoryother localisation
TranscriptId133792
TrackFilteredModels1
ProteinId133470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133470gene_9677Tribonema minus UTEX_B_3156 geneContig_66 349158..354131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133470Trimin1|133470|gw1.66.47.1Tribonema minus UTEX_B_3156 polypeptideContig_66 349158..354131 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9677_6exon_9677_6Tribonema minus UTEX_B_3156 exonContig_66 349158..349223 -
exon_9677_5exon_9677_5Tribonema minus UTEX_B_3156 exonContig_66 350056..350208 -
exon_9677_4exon_9677_4Tribonema minus UTEX_B_3156 exonContig_66 351029..351124 -
exon_9677_3exon_9677_3Tribonema minus UTEX_B_3156 exonContig_66 351851..352018 -
exon_9677_2exon_9677_2Tribonema minus UTEX_B_3156 exonContig_66 353324..353491 -
exon_9677_1exon_9677_1Tribonema minus UTEX_B_3156 exonContig_66 354027..354131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9677CDS_9677Tribonema minus UTEX_B_3156 CDSContig_66 354027..354131 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Trimin1|133470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_66:349158..354131- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGCCATCAAGAGCTGCGGCCGGCCTGCGACGCACGGCGTGACGATCCG
CTTCTGCGAGGACCACTACAAGGAGTTCAGGCAGGTCATGGCGCCCAAAG
ACAAGGAGCCCGACTCCGCCACCGCCAACCTGTACAACCAGATAGCGCTG
CTGAAGAAGCAGCTGGCGTCCACGGGCCAGGTCGCGCTCGAGTTCGTCAG
CCTCGAGACCGCCAAGGAGCGCATGCAGCAGGCCGTCACCAAGCTAATGG
CGGGCGACGAGAGCGCCGAGAAGGACATTGACCGCTGGGACAAGACGATC
CGCATGCACCCCGACTACGCCAAGGAGCAGGAGGAGCGCGCCAAGCAGTG
GGAGGCGGACAATCTGGCCGCCAACCAGCAGGCGCTGGCGCTCATGCGCA
AATTCGTGCCGCCCGACATTGGCGCCTCCAGCATCGCAAAGATGGCGGCC
GAGGGCGTGCCCGCGGTGGCCGCGAAGCGCATCTGGAAGGTCAAGGTGCT
GCACTGGGTGCGCTGGCACCCCGACGACATCAAGAAGGTCCACATCGCCG
ACCTGCAGACCACGTACTCCAATCAGGGGCTAGATGTGGTGGAGATGCGT
GCCGTGTGGGCGGCCATGCCGCAGGAGTTCGACCTCGACTCGGACGCCAA
GAAGGCGCAGTGGCGCCTCTTCTTCTGCCAGAAGCTCCAGGAGCTGACCA
CCAAGGAGGCGTCGGGGATGCTCTCGCGCAACGAGCGCCGCAACCCCGCG
TGGAAG
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protein sequence of jgi.p|Trimin1|133470

>Trimin1|133470|gw1.66.47.1 ID=Trimin1|133470|gw1.66.47.1|Name=jgi.p|Trimin1|133470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
CAIKSCGRPATHGVTIRFCEDHYKEFRQVMAPKDKEPDSATANLYNQIAL
LKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTI
RMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAA
EGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMR
AVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPA
WK
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mRNA from alignment at Contig_66:349158..354131-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Trimin1|133470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4974bp|location=Sequence derived from alignment at Contig_66:349158..354131- (Tribonema minus UTEX_B_3156 )
TGCGCCATCAAGAGCTGCGGCCGGCCTGCGACGCACGGCGTGACGATCCG
CTTCTGCGAGGACCACTACAAGGAGTTCAGGCAGGTCATGGCGCCCAAAG
ACAAGGTCAGTTCACGCATGAACTTGTGATTGATGATGATTCAATGATGA
ATGAATCCTGATGAATGATGGCAACGGAACCACTACTATAAGGAGTTCAG
GCAGGGCGCAAAGAAACTCGTAGTTGCGCGCTGTGCATACGTCACGTTTG
CAAACACGCTGGAATCTTCGGATGGCTCGCCGACGAAGGGCAGCAGTTGG
CTTGGCTTCGTTGAAACAGGGAGCAAAGTTACAACTATCTTCGACAGTGT
GCAGTCGGTTTATCCTTCCCCGCGCCCTGCGGCACCTCACTTCTGCAACG
TCAGCAGCAGCTGAACCCAACCCCAGCCATGACCCTCACCCTTGCAATTG
TGCGTGCAGGGGGTTTCGATGCAACGCACGTACAGGCGCCAAGATGCGTT
GCATTGACAACACCTGGGCGCACACAATGGCAAAAGATGCCATCATTGTC
AGACAATGTGCGGTTATTCTGTCCATACAAACTTAAAAGTGGCGCACCAC
CTGATCCCGCCCCTAATCCCAATTCTCGCGACGGCAGGAGGAGCCCGACT
CCGCCACCGCCAACCTGTACAACCAGATAGCGCTGCTGAAGAAGCAGCTG
GCGTCCACGGGCCAGGTCGCGCTCGAGTTCGTCAGCCTCGAGACCGCCAA
GGAGCGCATGCAGCAGGCCGTCACCAAGCTAATGGCGGGCGACGAGAGCG
CCGAGAAGGTGACGCTCCCACCCTAACTTACCCCCCTGTGCCCCTATACC
CCTTGCCGTTACCCTTGCGATACGCTCGGAGAACGGCAGCGCGCAGAAGT
TGACGCCCCCAGCCCTACCTCAAACCCTGGCTGTGACCCACGCACTACCC
TCAGATCACCGCCCTTCCCCCCTAGCTATAACACTTGTAATATTCTCTGG
AATGTGAGCCCAGCGTAGTGGATGCTGCTGACCCGACCCCAAGGTGAAGC
GTTGCGACACAGCAGCGGTGCAGCCATGTCATAACGTCCTTTCTGCAGCC
ATACTGAGCCGTTCCCCCAGCTCTAGCGCTTGCAACATCCTCTGAGATGC
GAGCGCAGCAGCGTCAAGGCTGCCAACGTCACTTTAACCCTAACGCTAAC
CCTCTCAACACAGCTGCTGCACAGCTATGTCACACTATTATTCTTGCAGC
CATACCAAGCTGGTCGTGGAGAGATATGATGCAGCTCGCCCCAGTTGGTA
ACCCTCACAAAGGAGCTCAAACCCTTTTGCACGACATGCAGTGAAAGTTG
CGACCAAGCTGATGACTGGGCCTGTAGAAGTGTACATTTGTGTGCTGCAG
TGCTTTTCAGGCTTGACATGATTCATGATATACTTCGAAGTACATGATTC
AAGATACACGGATGAAGCTTTTGACTTCCCTCAAGAACACTCAAACAATG
CTGCGTAGCGTGTTCAGCCAACTCGCATCTGGTGTCAGCCGCCGCACTCT
TTGCAAGCTCATTGTGATGAACAGCACCACAAAAAACAGCGTTGGCAGTT
CAATCATTGGGAGGTCTTATGACTGGCGGCGGTGAGTAGTGACCTCTACT
TGAATCATACTCCAAGTTGAAGTGCACCTGGTCATAAGCCAGGGTTTGAG
ATGGATTTTCAAAATCACCGTTTGGTCATTATGCGCATTGCGGCGAGACT
CTTGTCGGCCGTACATAAGACGTTCACGTGGCGGCACATGGCCATGTAGT
CGCCATGCAGGCGCGCAGCACACGCACAACACAAAGCTTGCGCGCAAGGA
GTCTTGCTCGCAACACGCTACATCACATGACGAACAGGATACAGACCGCT
GGGACAAGACGATGCGGCGCGCGCCTGAACACGGGCTAGCGTTAGGGTAA
GTGTTAGGGTTGGAGTTAGGGTTGCACCCTACAATTAGGGTTAGGGTCAG
GGTCGGGTACGGTCAGGGTTAGGGTCAGCGTTTCAGCTAGGGTCAGGGTC
AGGGGTTAGGGTGCAGGTACAAACCCTCACCAATCGTCCTCCGTTCGTCA
CACCGCCGTGCAGGACATTGACCGCTGGGACAAGACGATCCGCATGCACC
CCGACTACGCCAAGGAGCAGGAGGAGCGCGCCAAGCAGTGGGAGGCGGAC
AATCTGGCCGCCAACCAGCAGGCGCTGGCGCTCATGCGCAAATTCGTGCC
GCCCGACATTGGCGCCTCCAGCATCGCAAAGGTCAGCGGATGAGCGGCGC
CGTTGGCGTTGGCAGAGAGTCAAGAGTCGCAAGTTGAGAGTCCAGAGCCG
CAATGCGTTTACTGGGATCAGTCACTGCGCAGAGGTGTGTGGCTGGAGCC
GATGGAAGGGGAGGGAACGCGGGGGGGGGGGGGGGGGAATCAGGACATTT
ACTAGCAGTGTCAATGCCATCGTTGCGCGCAACAGGCGCAGTAGCATCTG
CATGCAAAGGGTAAGGACAACACACCGAGACTGCATGACGCACACAACGC
TTGCCGAGCCCGAGCGGCGTGGCATAGGCGTTTTGCCGAGGCTCGTGCAG
TTCAACATCACTTGCATAGAGCGCGCGCGTCGAGCGTGACACTGGCCAAG
TACAAGGTGCGTACCTACCCCGCAGTACATGCGTACCGGTGTGTGTACTG
TCCATGTCCTCATTGTGTACAGGCGGGAGACGCTCATGGGCAAGAAAGCG
CCAGTGCTCTGGAGGTACGTCGCTTGTCGCTTCGCTGCCCCCGCGCGCCA
GCCAGCGCCGCGCAGCCAGCACGGCACTGCGCCCGCTGCGCGCACTCGCC
GCCGCAGCGCCAGCAGCGCCGAGACCCGCCGCAGCAGCGCCGGCGGTGCG
CCTCTCTGTCGTGAGCCTCCAGCACGCAGCAGGCTTGCACGTGAACTTGG
CTGCGTACTTCAAGAGTCACGTGCTGACACACTGCGGCGTTGTTTGCCGT
GCTGCAGATGGCGGCCGAGGGCGTGCCCGCGGTGGCCGCGAAGCGCATCT
GGAAGGTCAAGGTGCTGCACTGGGTGCGCTGGCACCCCGACGACATCAAG
AAGGTACGCCCGCCACGCATCCGTCTGCTGATAGCGGGCTGCATGTGTTC
ATCGCAGGAGTGCACAAGGTCCAACCCCAGCCCTAACCCTGTGTTGCAGG
GCCGGTCAATGGTCGGCTGTGGGTACTCAAAGCCGCAAGCACGCAGTGCA
CGCGTGCGAGAGCTGAATGTCTGGCATGTTTCACAAAGGATCCGCCCCTC
GAGCGGAAGTACGTGCAGCACTTCACACTCGGGAGTCCGCCCAGATTGCA
CTGGCCCCGGGGTATGATTCCTTACACATGCTTGCATCTCACAATGAAGG
ATGACAAGTCAATGCTTTGTATACACAAGTATAAATGCAGAAGCGCTTAT
GTCAGGTACATGCGACCGTGTTTGACTCGTCGTTTGACTGGTCTAGCTGC
CCTGCTGGGACCGGTAGTGGTCAGGGTCGGGTGCAGTTCATACCACATCC
AACACCATCAAGCGTATGTTCTGATGATTCTTTTCATGTCTTATGCTGGC
ATGGTTCAACGCATCACGTTGCCCGCACGGGGGCGTCTCAAGCAGCGGTT
GAGACCAGTGTATCGCAGACCGACCACCGCTCCTCTTCAACGCATTCATG
AATGCACACGTGAATGGATTCATGAATGAACACGCATCGCCCGCGCGCGC
GCACTCGCCGCAGGTCCACATCGCCGACCTGTAGACCCGGTACTCCAACC
AGGGCTGGACGTGGTGGAGATGCGCCCCGTGCGGGCAACTGGATGAATGA
ATGAATGAACGAATAAATGAATGAATATTATTCAAATGAATGCACGTCGC
CCGCGCCCTCACCCTTGCCGCAGGTCCACATCGCCGACCTGCAGACCACG
TACTCCAATCAGGGGCTAGATGTGGTGGAGATGCGTGCCGTGTGGGCGGC
CATGCCGCAGGAGTTCGACCTCGACTCGGACGCCAAGAAGGCGCAGTGGC
GCCTCTTCTTCTGCCAGAAGCTCCAGGTGCGCCGCTGCTGTCACGATGAT
GATGCATGAATCCACGCGCGAGGGGGTCGCGCTGCGCACGCCGATGGATG
AATTCGTGTGCGAGGAAGGCCACACCCGCACATGGTCGGATTGATTCATG
CGCCTTTTGAAGCGCGATGCCGGCAGCGCGGCATGCAGCGGATACAGCGA
CTGCGCAGCGTGCTGCAATGCGCGCCTGTTGAGTGCGCGCAGCACTGCCA
TGATTGTGAAAGACAAAGCCGGCTTTTTCCTGCCGCTGCACGCGTCCTCG
AGTGCTGGAGACCCGCTTGCTCACGTTTCTCTGCCAGTGATTGCAGTGAC
GGCAACCGCCGGCGCGGTCCATGACTCTGAGCATCTTGCGAGGCACAAAG
GCAGCGGCCCTGTGCGAGGAAGGCCACACCCGCACATGGTCGGATTGAGT
CATGCGCCTTTTGAAGCGCGATGCCGGCAGCGCGGCATGCAGCGGATACG
GCGACTGCGCAGCGTGCTGCAATGCGCGCCTGTTGAGTGCGCGCAGCACT
GCCATGATTGTGAAAGACAAAGCCGGCTTTTTCCTGCCGCTGCACGCGTC
CTCGAGTGCTGGAGACCCGCTTGCTCACGTTTCTCTGCCAGTGATTGCAG
TGACGGCAACCGCCGGCGCGGTCCATGACTCTGAGCATCTTGCGAGGCAC
AAAGGCAGCGGCCCTGTCTATGCATGTCTGCACATGGAGCGCGCCCCCCG
CAGGGGGCGACATTGTTACAGTTGCTGTACACGTGCGCTGATCGCCGATG
CGCTGCGCAAAACGTCGCCGGAGCTGACACCGCCCCCGCCGTGCTCCGCG
CCGCGCAGGAGCTGACCACCAAGGAGGCGTCGGGGATGCTCTCGCGCAAC
GAGCGCCGCAACCCCGCGTGGAAG
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Coding sequence (CDS) from alignment at Contig_66:349158..354131-

>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Trimin1|133470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_66:349158..354131- (Tribonema minus UTEX_B_3156 )
TGCGCCATCAAGAGCTGCGGCCGGCCTGCGACGCACGGCGTGACGATCCG
CTTCTGCGAGGACCACTACAAGGAGTTCAGGCAGGTCATGGCGCCCAAAG
ACAAGGAGCCCGACTCCGCCACCGCCAACCTGTACAACCAGATAGCGCTG
CTGAAGAAGCAGCTGGCGTCCACGGGCCAGGTCGCGCTCGAGTTCGTCAG
CCTCGAGACCGCCAAGGAGCGCATGCAGCAGGCCGTCACCAAGCTAATGG
CGGGCGACGAGAGCGCCGAGAAGGACATTGACCGCTGGGACAAGACGATC
CGCATGCACCCCGACTACGCCAAGGAGCAGGAGGAGCGCGCCAAGCAGTG
GGAGGCGGACAATCTGGCCGCCAACCAGCAGGCGCTGGCGCTCATGCGCA
AATTCGTGCCGCCCGACATTGGCGCCTCCAGCATCGCAAAGATGGCGGCC
GAGGGCGTGCCCGCGGTGGCCGCGAAGCGCATCTGGAAGGTCAAGGTGCT
GCACTGGGTGCGCTGGCACCCCGACGACATCAAGAAGGTCCACATCGCCG
ACCTGCAGACCACGTACTCCAATCAGGGGCTAGATGTGGTGGAGATGCGT
GCCGTGTGGGCGGCCATGCCGCAGGAGTTCGACCTCGACTCGGACGCCAA
GAAGGCGCAGTGGCGCCTCTTCTTCTGCCAGAAGCTCCAGGAGCTGACCA
CCAAGGAGGCGTCGGGGATGCTCTCGCGCAACGAGCGCCGCAACCCCGCG
TGGAAG
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