mRNA_9660 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350550
Unique NamemRNA_9660
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.250e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2
Query:  251 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 604
            MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS
Sbjct:    1 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 118          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.700e-25
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  272 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHE--TVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 583
            +P L+F+ C+L+S+TL W    G  YKLEFR++    W    S+ I P Q+     + KVT L PS +YIFRL+ + A G+  GPGP+ AFDTEVVSC PT++S C
Sbjct:    3 VPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCC 108          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A836CAM8_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM8_9STRA)

HSP 1 Score: 991 bits (2563), Expect = 0.000e+0
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 1
Query:    1 MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT 1476
            MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT
Sbjct:    1 MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT 492          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A2U9BA38_SCOMX (DNA-directed DNA/RNA polymerase mu n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9BA38_SCOMX)

HSP 1 Score: 150 bits (380), Expect = 1.940e-36
Identity = 113/379 (29.82%), Postives = 166/379 (43.80%), Query Frame = 1
Query:  526 GEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWE---------------VCRELDPKGTIKFMIG------GGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLP----DGMNN-----------KKSEDTGMYEG--NTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
            GEA +  VP FACQRR  L +HN  I   L  L +  +   +  R +AF + AAVLK+LP  V    +L+ +  +G+ ++  + +I++ G    +E+M+ + R  A+K L+ V+ VG   A+RW   G     I T  +  +SG      ++ G E                  E+  K  +  + G      GG+RRGK    D+D + T    G         V W      +L  K     Y++  N P      M+            KK  + G   G   T   G  PWR    RVD+ +S  SQ+A+ +LGWTGS+ F R++RR+A                        T EE++F  LGLEFIPP  RN 
Sbjct:  129 GEAVVFSVPSFACQRRITLDNHNTIITGALSLLAENAELSEEDGRGVAFRRAAAVLKALPEPVTCMTQLRGLPCLGEHSLRVIKDILENGESNEVESMKQSERYKALKVLTGVFGVGAKTADRWIREG-----IHTLHQLRDSGHALNRAQQAGVEHYDDLNQPVSMAEADAVGEIVEKAVVSVLPGAQITLTGGFRRGKPSGHDVDFLITHPEEGREEGLMSKVVSWLESQGFLLYHKTSRNSYLESANGPARPASNMDRFERCFSIFKLAKKYHELGKDAGPEETKPAGHKPWRAV--RVDLVVSPISQFAFALLGWTGSKLFERELRRWAGQEKAMSLSSHALFDNKQKRYLTATSEEEIFGHLGLEFIPPSERNA 500          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A5A9N5M5_9TELE (DNA-directed DNA/RNA polymerase mu n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9N5M5_9TELE)

HSP 1 Score: 147 bits (371), Expect = 1.770e-35
Identity = 113/363 (31.13%), Postives = 169/363 (46.56%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITN--IETAQKALESGQLAK-EWEEVGWEVCR-ELDPKGTI------------KFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMY-----EGN---TSLLGLYP--------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYAS-------------DGFTR-------EEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+HHN  +   L  L +      +  RS+AF + A+VLK+LP RV++  ELK +  +G  +   + EI++ G    +E+MR + +  A+K L+ ++ VG   A+RW+  GL   +  I T Q+     Q     ++E+   V + E D  G I            +  + GG+RRGKEL  D+D + T    G         + W      +L  K     Y++  + P    N        +     +G+   T   G+ P        WR    RVD+ +S  SQ+A+  LGWTGS+ F R +RR+A              D   R       EE++FE LGLEFIPP  RN 
Sbjct:   97 YACQRRTPLKHHNSHLTEALEVLSENAAYGENEGRSVAFRRAASVLKALPYRVQTMDELKCLPCLGDHSQRVIKEILEDGTSREVESMRQSEQFQAMKALTGIFGVGVRTADRWFREGLRSPSDLIRTGQQLNREQQAGVLYYDELNKPVTKHEADLIGDIVKEAVSAVLPGAEIQLMGGFRRGKELGHDVDFLITHPEEGKEEELMPKIISWLEERDLLLYQKTTRNSYLEKKDAPGRPPNNMDRFERCFSIFKLQGHAETTGSDGVRPSNQSEASYWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERDLRRWAGQEKHMSLSSHALYDSVQRCYVRAQSEEEIFEYLGLEFIPPCERNA 457          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI000E1E930D (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D)

HSP 1 Score: 144 bits (363), Expect = 6.500e-35
Identity = 103/355 (29.01%), Postives = 160/355 (45.07%), Query Frame = 1
Query:  529 EAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLG-ITNIETAQKALESGQLA--KEWEEVGWEV---------------CRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNL-PDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
            E P   VP + CQRRTPL HHN  +   L  L      + D +RSLAFT+ A+ LK+LPRR+    EL  +  +G+     + E+++ G     EA R + R   ++  + ++ VG   A RWY  GL  + ++  A   L   Q A  + WE++   V                R + P  T+  +  GG+RRGK    D+D++ +    G      G  V         + E+       L P G           +E   +++ L     +  RVD+ ++   Q+A+ +LGWTGSR F R++RR+AS                         EE++F++LGL++IPP  RN 
Sbjct:   42 EEPSTAVPAYGCQRRTPLAHHNTVLTEALETLARAAAFDGDQRRSLAFTRAASALKALPRRLGDVRELPALPGVGEHCRRVIQEVLEDGSSAEAEAARRSERYRTMELFTGIFGVGTQTAARWYRQGLRTLDDLRAAGPRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAEARRVLPDATVTLV--GGFRRGKPTGHDVDLLLSHPEEGRERALLGPLVARLEQQGLLLYEQSQPNTFGLEPSG----GGSGLDRFERCFAIVRL----ARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPAASEEEIFQLLGLDYIPPAERNA 386          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: W5UBD8_ICTPU (DNA-directed DNA/RNA polymerase mu n=3 Tax=Siluroidei TaxID=1489793 RepID=W5UBD8_ICTPU)

HSP 1 Score: 145 bits (367), Expect = 1.340e-34
Identity = 105/378 (27.78%), Postives = 166/378 (43.92%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIK---------------------FMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLP--------------------------DGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--GFT------------------REEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+HHN  +   L  L +  +   +  RS+AF + A+VLK+LP  VR+  ELK +  +G+ ++  + EI++ G  + +E+ R + +  A+K L+ V+ VG   A+RW+  GL      + +  + +GQ     ++ G +   +L+   T K                       + GG+RRGKE+  D+D + T    G         V W      +L  K     Y++  + P                          D      S ++G  +G         WR    RVD+ +S  SQ+A+  LGWTGS+ F R++RR+A    G +                   EE +F  LGLE+IPP  RN 
Sbjct:  138 YACQRRTPLKHHNSFLTEALETLAENAEFSENEGRSVAFRRSASVLKALPYVVRAMNELKDLPCLGEHSLRVIKEILEDGTSSEVESTRQSEQFQAMKALTGVFGVGARTADRWFREGL-----RSPEDLIHTGQKLNHAQQAGVQYYNDLNTPVTKKEAMVISDIVEKAVKAVLPGAIITLTGGFRRGKEVGHDVDFLITHPEEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLESKDGPARPPSNMDRFERCFSIFKLEQSQVNSDTRLEASSYNSGTTDGMEERHSGSSWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKQQRYLRANSEEDIFAHLGLEYIPPSERNA 508          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A8C4CLV6_9TELE (DNA-directed DNA/RNA polymerase mu n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CLV6_9TELE)

HSP 1 Score: 143 bits (360), Expect = 1.890e-34
Identity = 104/354 (29.38%), Postives = 170/354 (48.02%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGI-TNIETAQKALESGQLA--KEWEEVGWEVCR-ELDPKGTI------------KFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLY------PWRGKMR-----RVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--------------------GFTREEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+H+N  +   L  L +      +  RS+AFT+ A+VLK+LPR V+   EL+ +  +G+ ++  + EI++ G    +E+ R + +  A+K L+ ++ VG   A+RWY  G+   +++  +++ L   Q A  + ++++   V + E D  G I            +  + GG+RRGKE   D+D + T    G         V W      +  +  Y++  + P     +   +   +E   S+  L       P R K       RVD+ +S  SQ+A+ VLGWTGS+ F R +RRYA                        T EE++F +LGLE+IP   RN 
Sbjct:   42 YACQRRTPLKHNNTHLTHALELLAESAAFGENEGRSVAFTRAASVLKTLPRSVQRIEELRGLPCLGEHSLRVIKEILEYGASQEVESTRQSEQYQAMKALTGIFGVGVKTADRWYREGVRRPSDLMDSEQKLNQAQQAGLQHYKDLNTCVSKAEADAIGVIVDQAVQAVLPGAQITLTGGFRRGKESGHDVDFLITHPEEGKEEGLMPKVVNWLDTQVGQKGQNSYLESKDGPA----RPPSNMDRFERCFSIFKLESQSCSPPEREKSHQWKAVRVDLVVSPFSQFAFAVLGWTGSKLFERDLRRYAGQVKNMSLNSHSLFDSHQRCFLRATSEEEIFSLLGLEYIPACDRNA 391          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI0019C493EA (DNA-directed DNA/RNA polymerase mu n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C493EA)

HSP 1 Score: 145 bits (365), Expect = 2.060e-34
Identity = 106/362 (29.28%), Postives = 169/362 (46.69%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLG--ITNIETAQKALESGQLAKEW-EEVGWEVCRE---------------LDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYP-------------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+HHN  +   L  L +  +   +  RS+AF + A+VLK+LP  VR+  ELK +  +G+ ++  + EI++ G    +E+ R + +  A+K L+ V+ VG   A+RW   GL   +  ++T QK   + Q   ++ +++   V R+               L P+  I   + GG+RRGKE+  D+D + T    G         V W      +L  K     Y++  + P     +   +   +E   S+  L               WR    RVD+ +S  SQ+A+  LGWTGS+ F R++RR+A                        + EE++F  LGLE+IPP  RN 
Sbjct:  140 YACQRRTPLKHHNSFLTEALEILAENAEFSENEGRSVAFRRSASVLKALPHAVRTIDELKDLPCLGEHSLSVIKEILEDGTSREVESTRQSEQFQAMKALTGVFGVGVKTADRWVREGLRSPLDLVDTGQKLNHAQQAGVQYYKDLNTPVTRKEAMVISVIVEKAVKALLPEAIIT--LTGGFRRGKEVGHDVDFLITHPEEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLESKDGPA----RPPSNMDRFERCFSIFKLEQSKIDSNAHAEASSWRAI--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKKKCYLQASSEEEIFTHLGLEYIPPSERNA 493          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A556U392_BAGYA (DNA-directed DNA/RNA polymerase mu n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U392_BAGYA)

HSP 1 Score: 145 bits (365), Expect = 2.500e-34
Identity = 108/378 (28.57%), Postives = 171/378 (45.24%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIK---------------------FMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIK--------VCNLP------------------DGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--GFT------------------REEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+HHN  +   L  L    +  ++  RS+AF + A+VLK+LPR VR+  +LK +  +G+ ++  + EI+  G  + +E  R + +  A+K L+ V+ VG   A+RW+  GL   +++   K+    Q     +E G +   +L+   T K                       + GG+RRGKE+  D+D + T    G         V W      +L  K     Y++         CN+                   D      S ++G+ +G  +  G   WR    RVD+ +S  SQ+A+  LGWTGS+ F R++RR+A    G +                   EE++F +LGLE+IPP  RN 
Sbjct:  138 YACQRRTPLKHHNSVLTDALEILALNAEFTKNEGRSVAFRRAASVLKALPRGVRTMDDLKDLPCLGEHSLRVIKEILDAGTSSEVEWTRQSEQFQAMKALTGVFGVGVRTADRWFREGLR-NHLDLIHKS----QKLNRAQEAGVQYYNDLNTPVTKKEAMVITVIVEKAVNDVLPGAIITLTGGFRRGKEVGHDVDFLITHPDEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLENKDGPARPACNMDRFERCFSIFKLERSKLDSDTRIEDSSYNSGVTDGTQTHSGS-TWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKQQRYLPANSEEEIFTLLGLEYIPPSERNA 507          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A6J2UVU8_CHACN (DNA-directed DNA/RNA polymerase mu n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UVU8_CHACN)

HSP 1 Score: 145 bits (365), Expect = 2.560e-34
Identity = 109/386 (28.24%), Postives = 176/386 (45.60%), Query Frame = 1
Query:  529 EAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGL-GITNIETAQKALESGQLA--------------KEWEEVGW---EVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYI-----------------------KVCNLPD--GMNNKKSEDTGMYEGNT---SLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
            ++P   +  +ACQRRTPL+HHN  +   L  L    +   +  RS+AF + AAVLK+LPR VR   +LK +  +G+ ++  + EI++ G  + +E+ R + +  A+K L+ ++ VG   AERW+  G+  + +++T    L   Q A               E   +G    E  R + P   I   + GG+RRGKE+  D+D + T    G         V W      +L  K     Y+                       K+   P+  G +N+ +    + EG+      +   P   +  RVD+ +S  SQ+A+ +LGWTGS+ F R++RR+A                        + EE++F +LGLE+IPP  RN 
Sbjct:  126 DSPTFAIESYACQRRTPLKHHNASLTEALELLAQNAEFTDNEGRSVAFRRAAAVLKTLPRAVRRLDDLKGLPCLGEHSLRVIKEILEDGVSSEVESTRQSEQYKAMKVLTGIFGVGTKTAERWFREGIRSLADLKTRGGRLNREQQAGLDYYDDLNRPVSKAEAHAIGQIVGEAVRAVLPGAEIT--LTGGFRRGKEVGHDVDFLITHPEEGKEEGLMPKIVSWLETKGLLLYQKTTRNSYLESKDGPVRPSHNMDRFERCFSIFKLKRTPEVCGTSNQSAGQNDVTEGSDVRQQEVQSEPSDWRAVRVDLVVSPYSQFAFALLGWTGSKLFERELRRWAGQEKSMSLSSHVLYDRAQNRYLRASSEEEIFALLGLEYIPPSQRNA 509          
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI001C8A97C3 (DNA-directed DNA/RNA polymerase mu n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A97C3)

HSP 1 Score: 143 bits (361), Expect = 7.620e-34
Identity = 106/371 (28.57%), Postives = 167/371 (45.01%), Query Frame = 1
Query:  556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITN--IETAQKALESGQLAKEW----------------EEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYP----------------------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG-----------------FTR---EEQVFEMLGLEFIPPEFRNT 1476
            +ACQRRTPL+HHN  +   L  L    +   +  RS+AF + A+VLK+LPRRVRS  +L+ +  +G  +   + EI++ G    +E+ R + +  A+K L+ ++ VG   A+RW+  GL   +  I T Q+   + Q   ++                 ++  +    + P   I+ M  GG+RRGKE+  D+D + T    G          +W      +L  K     Y++  + P     + S +   +E   S+  L                        WR    RVD+ +S  SQ+A+  LGWTGS+ F R++RR+A                    + R   EE++F  LGLEFIPP  RN 
Sbjct:  134 YACQRRTPLKHHNSFLTEALEILAQNAEYNDNEGRSVAFRRAASVLKALPRRVRSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQYQAMKALTGIFGVGVRTADRWFREGLRSPDDLIRTGQQLNRAQQAGVQYYDDLQKPVTMAEADVISDIVEKAVHSVLPGAEIQLM--GGFRRGKEVGHDVDFLITHPEEGKEEGLMPKITKWLEEQGLLLYQKTTRNSYLEKTDGPA----RASSNMDRFERCFSIFKLQKPAVSRESNCTVSAEDAGSEASGWRAV--RVDLVVSPCSQFAFATLGWTGSKLFERELRRWAGQEKHMSLSSHALYDSTQNLYLRAKTEEEIFSYLGLEFIPPSERNA 496          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YPU1_9STRA2.250e-81100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FM73_ECTSI1.700e-2548.11Fibronectin type-III domain-containing protein n=2... [more]
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BLAST of jgi.p|Trimin1|350550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAM8_9STRA0.000e+0100.00BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2U9BA38_SCOMX1.940e-3629.82DNA-directed DNA/RNA polymerase mu n=6 Tax=Scophth... [more]
A0A5A9N5M5_9TELE1.770e-3531.13DNA-directed DNA/RNA polymerase mu n=1 Tax=Triplop... [more]
UPI000E1E930D6.500e-3529.01DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaiu... [more]
W5UBD8_ICTPU1.340e-3427.78DNA-directed DNA/RNA polymerase mu n=3 Tax=Siluroi... [more]
A0A8C4CLV6_9TELE1.890e-3429.38DNA-directed DNA/RNA polymerase mu n=1 Tax=Dentice... [more]
UPI0019C493EA2.060e-3429.28DNA-directed DNA/RNA polymerase mu n=1 Tax=Silurus... [more]
A0A556U392_BAGYA2.500e-3428.57DNA-directed DNA/RNA polymerase mu n=1 Tax=Bagariu... [more]
A0A6J2UVU8_CHACN2.560e-3428.24DNA-directed DNA/RNA polymerase mu n=1 Tax=Chanos ... [more]
UPI001C8A97C37.620e-3428.57DNA-directed DNA/RNA polymerase mu n=1 Tax=Puntigr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:217504..220900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350550|estExt_Genemark1.C_Ctg_660033
Hectar predicted targeting categoryother localisation
TranscriptId350872
TrackFilteredModels1
ProteinId350550
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350550gene_9660Tribonema minus UTEX_B_3156 geneContig_66 217504..220900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350550Trimin1|350550|estExt_Genemark1.C_Ctg_660033Tribonema minus UTEX_B_3156 polypeptideContig_66 217873..220650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9660_5exon_9660_5Tribonema minus UTEX_B_3156 exonContig_66 217504..217931 -
exon_9660_4exon_9660_4Tribonema minus UTEX_B_3156 exonContig_66 218949..219016 -
exon_9660_3exon_9660_3Tribonema minus UTEX_B_3156 exonContig_66 219649..219749 -
exon_9660_2exon_9660_2Tribonema minus UTEX_B_3156 exonContig_66 220126..220180 -
exon_9660_1exon_9660_1Tribonema minus UTEX_B_3156 exonContig_66 220577..220900 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9660UTR3_9660Tribonema minus UTEX_B_3156 three_prime_UTRContig_66 217504..217872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9660CDS_9660Tribonema minus UTEX_B_3156 CDSContig_66 220577..220650 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9660UTR5_9660Tribonema minus UTEX_B_3156 five_prime_UTRContig_66 220651..220900 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=976bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTCGAACTCTCAGCAACCGGCACGTGCTCGCTAAAGCTTGCACCACCAG
GACAGGTGGAGCCCTGTGGATCGAGGATCGGCATTAACAGCTGAGGCGCT
GCAGGCCGCTGGCGGGTGTGTTCAAGGCAGCTTCATTAGTGTCAGAGCAA
GCGTCAAGCTCTGCCACCACTTGACAGTGTAAGAGCTGGGCGTGAAGGCG
CCCGCATGTCTCTCTGCTAAGAGTGTTTTGGGAGAGAGAGCGGATAAAGA
ATGGAGCCCCCCGCTGCCAAGCTGCCCGTGCTGCGATTCCAGAGCTGTGA
CCTGGAGAGCTTGACACTAGAGTGGGCTGGCGAACCTGGCGTGGAGTATA
AGCTGGAGTTCCGGGACGTGAATCGGAAGGGCTGGGACAGTGCGTTCTCG
CTGCGCATACCGCCGTCGCAGACGGGGCACGAGACCGTCAAGGTGACGGA
CCTGCTGCCCTCCATGACCTACATATTCAGGTTATGGATCATGGGTGCCG
GCGGGAAGCTGGAGGGGCCCGGACCGGACACGGCGTTCGACACAGAAGTG
GTGTCGTGCACGCCGACGAGCCGCAGCGTGTGCTGCGGCGTGTGCGTGGT
GTCCTGATGTACTGTGCATACACGGCTGCGACCTGGCAGATCCCCAGTCG
CGCGCACGCAAGCCGCCGCCGCCGCAGCGGCGAGGCGTTTTCCATGACAG
TGGCGCGTACCGCGCCAGGCCCGTTCCGCCGCGCGGCAGCGCTGTCACTT
TTTTTGTAAGTCCAGTTCCAGTCGTAGAGGTGCCCGCGTTTACCGCCGCT
GCTGGCTGCGAAGCCCCCCCCACCCCCCCCCGCCCGCGCCCCGCAGCTGA
GCACTGCGATTGAGCCATCCTGTGTCCACCTTCCGCCCCCAGGGATACTG
CGCCAAGCGCGAGAGAGTGCGCCACACGCCTCCTTGCGCTGTGGACGCGT
CCATATGCCACATTTTTGTGCACGCC
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protein sequence of jgi.p|Trimin1|350550

>Trimin1|350550|estExt_Genemark1.C_Ctg_660033 ID=Trimin1|350550|estExt_Genemark1.C_Ctg_660033|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFS
LRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEV
VSCTPTSRSVCCGVCVVS*
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mRNA from alignment at Contig_66:217504..220900-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3397bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )
GTTCGAACTCTCAGCAACCGGCACGTGCTCGCTAAAGCTTGCACCACCAG GACAGGTGGAGCCCTGTGGATCGAGGATCGGCATTAACAGCTGAGGCGCT GCAGGCCGCTGGCGGGTGTGTTCAAGGCAGCTTCATTAGTGTCAGAGCAA GCGTCAAGCTCTGCCACCACTTGACAGTGTAAGAGCTGGGCGTGAAGGCG CCCGCATGTCTCTCTGCTAAGAGTGTTTTGGGAGAGAGAGCGGATAAAGA ATGGAGCCCCCCGCTGCCAAGCTGCCCGTGCTGCGATTCCAGAGCTGTGA CCTGGAGAGCTTGACACTAGAGTGGTAAGTGAGCTGTCAGTAATGCACGG CAGCGAGGCCCCTGGTACTGTTGGATACTTTTAAAAAAGATGGCAGTTAA GACTAGCCTTGGCCGCACCTCATTTGCAGGTGTCATGCGCGACCGTGCGA GGCGTATGACCATGGTCATGCCAGCAATCGCTCACGTCTCTTGCTGTTCT GCCCCATGGAGCTTCCGGACTGTATTTTCCCTCAATCCTTTTTTGCCACT GCACGCCAGGATCAGACACGTGGTGCGTGTTTACTGTTGGACCAGTGCGC CAGCAGGTTTCACCATGTACACTACCATGAATCACTCAGCACCGGAATTC ACACCACTCAGCAAACGCAACCGGACCTTTGTTGCAATGATGCGTTGACG TGACGTTGCCGTGTGTTCAGGGCTGGCGAACCTGGCGTGGAGTATAAGCT GGAGTTCCGGGACGTGAATCGGAAGGTGCGCGCGGGCCATTGCACCTCAC ATGCTGCTCTCCTATGCCAACGCTTGCGTTCGAAATGCGCTGGAACAGAC ATGCTCGATCCACCCCTGTCAAGCACGTGCAAACTCTCGTTGCGGCCTGG CGGCAGCCATGCAGCGCAATCGGCGCCTTGATGCGGACCCCGGCCGTGCA TTAAGCATTGCCGCCGTGAAAGCGATACGGCTTGCGCCCCACTTGAAAGT CAGTGCATGAAACGGATGCGAAGTTGCAGTGCCTGGGCGTCAGAACATCT GCAAGCGCGCGCGCGCGCCCCGCTCTCGAGCTGCAGGGGGACAGCGCCCT GACGCGCGATCCCCTCGACTGCTGCATCATGCTGTTGTCCATCGCGAGCA GGGCTGGGACAGTGCGTTCTCGCTGCGCATACCGCCGTCGCAGACGGGGC ACGAGACCGTCAAGGTGACGGACCTGCTGCCCTCCATGACCTACATATTC AGGTGAGCGCGCCGCGCTGTCGTCGGCGCGCACGGCTGGAGCACATGCTA TCAATTAGAAATATCGATATGAATGCATGTTCACATGCTTGCGCTTTGCA GCGTGTACTTGCGGCAGGGCGCGCGCCTACATGCAGATGTCCATGCAGAC TTGAGTGTACGCGGTGTGCGCGTGCGTGCCGCCATGCGCGTCTGAGCGCT GGACACGCCTCAGAATGGTGCAGATGAGGCTGCCATCCACACCCCATGTG GTCAGATGTGAGTCACCAGGGGGGCGCTCGTGGGCTGCGCTCAGTTGCAG CAGAGGCGTAACTTCACATCAAAACCTGCCAGCTCTAACCACATCTGGCG GCTGCTCGCCTTGCTGCATTGCCCACATGCGTGCTCACGTGCGTATGAGG CGGATGCATCCCGCCCATGCGTCGTTTGGCGCTCAAGCAGTCACTCAGTG AGCGACTCTCTCACCCCTAGACTACACGTGAATGGCCGCCGGCGCTTCTG TTTACTGCTGTCGCTCGCCGTGCACGGCGCCACCTGAGCAGCCGCAGACG GTACTGTTCTCGCCCTCAGCAGCAGCTCCACCGCAAGTTGATAATTGCCC CCCCCCCCCCACCCCCCCATCCCCTTGCCCCCAGGTTATGGATCATGGGT GCCGGCGGGAAGCTGGAGGGGCCCGGACCGGACACGGCGTTCGACACAGA AGGTAGGTGACGCCGGTGCAGCTGTAGTTTGAGTGGGAATGGGACGCGCT TGAGCGCACCCCGTGCGCGCTGGGAGTCAGTCGCTTACGGCACGATGTCT GTACTGCGCATGCTCTTCATGGGTACAGGGTTTTCCGCCCCTCAGGCGAA GATCAATAAAAGTTTAGTGCACGCTGCGGCAGGCGCGTTGTCGAGGGCCG GGGGCCATAACTTACTCAGTCGCGACCCTGCGTGCGCCTCAGAGGGCGTT CTCAATCTACTTGGACGCGCACAATATCACCACTTTACAATAGGGGAACT CGACAAGCCCACACGCACAGCGAGCCTGGATGACAGTTACAGAGTGTTCG GCACGCGGCAGCGATGGTTTTCCACTGCTGCTGGGCTCAGCGGGGCAGGG CTCGGACCCGCAGTGGCAGCACGCTAAAGCGCTGCATGTTAGACGTTCCT GTGGCTTGATCTCCAAGGTGCATGCTGCTTGTAGACAGTCCGATGCTAGT CTGCACGCTTGAGCACTGCAGTGAGGCACAAATTTCAGGCCCGTCTCCGT CTGCACGGGCACTTCGCCTTGCGGCAGACCGCATCATCACGCGCAGCGGC TCTTGCGATGGCAGCCACTGCAAAGACTGACGTGCGCCTGCGCTTGTGAC ACACTGCTCAGCGAGTGGAGTGCCCCGCAAGGGGCAGCGCACCTCATCGC GCGCCGGCTGGCTGGCGGTGCGGACGCGCTTGAGCTTGTGACGCTGCGCT GCGCGCACAGCGCTGCGCAGCGTCCGTGTGCCGCTGCGCCGCAGGAACGT GCCGGCACGACTCCCCACGCTTCCCTTAGTGCAACATATCAGCGGCACCT GCTCGTTTACTGTACTGCCATGGTGCGCAAGCGGCACCGCTGGGTCACAA GCACCTTTTGCACACGGCCTGTTTGCGCGCTTGCGTGCATGCCCAGTTGC CAATTCATGCAGAGGCTGACAATCCCAAACCCTCCTTGCTATCTTCTCCG CGCCTCGCCGCCCCCGCAGTGGTGTCGTGCACGCCGACGAGCCGCAGCGT GTGCTGCGGCGTGTGCGTGGTGTCCTGATGTACTGTGCATACACGGCTGC GACCTGGCAGATCCCCAGTCGCGCGCACGCAAGCCGCCGCCGCCGCAGCG GCGAGGCGTTTTCCATGACAGTGGCGCGTACCGCGCCAGGCCCGTTCCGC CGCGCGGCAGCGCTGTCACTTTTTTTGTAAGTCCAGTTCCAGTCGTAGAG GTGCCCGCGTTTACCGCCGCTGCTGGCTGCGAAGCCCCCCCCACCCCCCC CCGCCCGCGCCCCGCAGCTGAGCACTGCGATTGAGCCATCCTGTGTCCAC CTTCCGCCCCCAGGGATACTGCGCCAAGCGCGAGAGAGTGCGCCACACGC CTCCTTGCGCTGTGGACGCGTCCATATGCCACATTTTTGTGCACGCC
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Coding sequence (CDS) from alignment at Contig_66:217504..220900-

>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )
ATGGAGCCCCCCGCTGCCAAGCTGCCCGTGCTGCGATTCCAGAGCTGTGA
CCTGGAGAGCTTGACACTAGAGTGGGCTGGCGAACCTGGCGTGGAGTATA
AGCTGGAGTTCCGGGACGTGAATCGGAAGGGCTGGGACAGTGCGTTCTCG
CTGCGCATACCGCCGTCGCAGACGGGGCACGAGACCGTCAAGGTGACGGA
CCTGCTGCCCTCCATGACCTACATATTCAGGTTATGGATCATGGGTGCCG
GCGGGAAGCTGGAGGGGCCCGGACCGGACACGGCGTTCGACACAGAAGTG
GTGTCGTGCACGCCGACGAGCCGCAGCGTGTGCTGCGGCGTGTGCGTGGT
GTCCTGA
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