mRNA_9642 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A835YVC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC7_9STRA) HSP 1 Score: 659 bits (1700), Expect = 1.600e-238 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1 Query: 1 MSVLVQETSPRHALVVHILYRGECFLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEELPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWLSRSDDSSGGGSRSGRSGADWPGGWGCSGXXXXXXXXXRRTLQAAARKLAVAMQDDISPLSNAVAALAATAVARATESQAL 1047 MSVLVQETSPRHALVVHILYRGECFLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEELPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWLSRSDDSSGGGSRSGRSGADWPGGWGCSGXXXXXXXXXRRTLQAAARKLAVAMQDDISPLSNAVAALAATAVARATESQAL Sbjct: 1 MSVLVQETSPRHALVVHILYRGECFLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEELPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWLSRSDDSSGGGSRSGRSGADWPGGWGCSGXXXXXXXXXRRTLQAAARKLAVAMQDDISPLSNAVAALAATAVARATESQAL 349
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A7R9YAN1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAN1_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.320e-31 Identity = 104/281 (37.01%), Postives = 135/281 (48.04%), Query Frame = 1 Query: 52 ILYRGECFLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEELPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLS-------------------TLVQSLQLRQ--PCYTL-----PVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAG----LRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARF--RSAVAFARYDDIPAVV 798 ILY G FLETA GLH VL RLG S I P L I+LG + + LP I+ EQ +S W+T Y + +R A V DFS N+ T++++ Q Q P L P ADA + P + + +DVLFYG N R ++ ++L A L+ F Y+LFG R A+ RA+VVLNLHYYE A+LEVHR+ LLA G +VSE SAD LD + R AV FA + + A V Sbjct: 101 ILYWGSVFLETAHGLHVVLNRLGYESAIVDGNSDHRRDPR----------LHILLGANFMKFLPENFIVYQMEQKTSKWITPQYESTMRRAKCVWDFSPANVEHWQAKGYTAAYVPLPVVTETVIETQQRYQGHPLAALSNDSSPASAAADATEA-PESVVEQWDKTRPIDVLFYGAPNHHRAKIRKQLEEAAEGKDLKILFSMHYSLFGKRREAAIQRAKVVLNLHYYEGASLEVHRIHHLLAHGKAIVSERSADPRLDEVYEKRGAVFFASEESLVADV 370
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A7S3JZX3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZX3_9STRA) HSP 1 Score: 120 bits (301), Expect = 3.950e-27 Identity = 86/251 (34.26%), Postives = 120/251 (47.81%), Query Frame = 1 Query: 73 FLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEE--LPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADA--FQILPGA-GSSDNEGDDCVDVLFYGCANARRTEML----RRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVV 798 F ET GL D+ LG + L G + + PW+ + H++ +V H+ + +P L EQ+ SPW+TE Y A + DF+ + +S VYVP + P E DVLF+G +N RR ++ RL+AAG F+ Y LFG R + A VVLN+HYYE AALEVHR+ LLA G CV+SE S D LD+ + + VAF + + V Sbjct: 42 FAETGRGLADIFGLLGWHDQVY-LVQGNKGSAPWAVDGAEHVVWVLVGVTHMPSDWSMPRLYFLYQMEQLCSPWITEEYIKVAMGALSIWDFAPSHTEYWRKS-------GLSSVYVPLSIPLIWLAPNTLNKIQQEETQKTDVLFFGSSNKRRLQIQDTLEARLAAAGHTCAFYMNYDLFGQGRDSVVDNATVVLNIHYYEHAALEVHRINYLLARGKCVLSEWSVDSHLDSVYSAVVAFTPTESLADVA 284
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: F0YBX6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBX6_AURAN) HSP 1 Score: 117 bits (294), Expect = 5.660e-27 Identity = 87/270 (32.22%), Postives = 121/270 (44.81%), Query Frame = 1 Query: 73 FLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEEL---------PTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEML-------------------RRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVV 798 FLE AEGL L+ LG+A+ + G EA P S+ L++++G L + P ++ EQ+ S W+T Y A + A + +F+ + + + YVP + P S D+LFYGC NARR + +R+ +F + LFG R A RA VVLN H+YE AALE HRL LL G CV+SEPSAD++LDA + V FA Y D+P Sbjct: 10 FLEAAEGLRSALRLLGVAARVDV---GVEACPWVSDDE-----LWVLVGATLLPGVAPSDAPWPPPRRFVVYQMEQLGSAWLTPAYLALVARADALWEFAPSHAPRWAAAARR-------VAYVPLAPPDLGPAPPPSPAPA---ADLLFYGCGNARRAALRDACAALLAPRGYRVDFRGRKRVIQVRFNVDFRLGFDLFGAARDDAARRATVVLNAHFYEGAALETHRLNYLLQRGACVLSEPSADRDLDALYARGVRFAAYGDLPRAA 261
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: X0TMX0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0TMX0_9ZZZZ) HSP 1 Score: 115 bits (287), Expect = 3.240e-26 Identity = 80/233 (34.33%), Postives = 116/233 (49.79%), Query Frame = 1 Query: 73 FLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEELPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFA 771 F E+A G+ +L++ G+ ++ EAT L I+ G H +LP +L EQ+ S + T +Y ++ A V D S R L SL + PV V P + D+LFYGC NARR+ + + L ++F + LFG R R ++ A VVLN+H+Y +A+LEVHR+ LLA G V+SEPS+D E+DA + S V FA Sbjct: 3 FGESAAGMRALLEQQGVR-----VSEAEEATDD---------SLHILFGAHTMAKLPQRYVLYQGEQLKSSYFTHSYREKIKGAVHVFDHS-RKGQELCSSLGCESTQVSFPVSVDVSCVPPDP---------EQRYDLLFYGCGNARRSSLKESFRRSDLTSKFFLGFDLFGERRDREISSAAVVLNVHFYAEASLEVHRINYLLARGKVVLSEPSSDTEMDALYSSVVHFA 211
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A7S3K191_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K191_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.960e-24 Identity = 84/245 (34.29%), Postives = 120/245 (48.98%), Query Frame = 1 Query: 73 FLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLFEE--LPTTGILVNYEQMSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADA--FQILPGAGSS---DNEGDDCVDVLFYGCANARRTEMLR----RLSAAGLRAEFHFE--YALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAF 768 F ET GL D+ LG + L G + + PW+ + H++ +V H+ + +P L EQ+ SPW+TE Y A + DF+ + +S VYVP + P + + DVLF+G +NARR ++ RL+A G F+ + + LFG +R + A VVLNLHYYE AALEVH + LLA G CV+SE S D LD+ + +AVAF Sbjct: 42 FAETGRGLADIFGLLGWHDQVY-LVQGNKGSAPWAVDGAEHVVWVLVGVTHMPSDWSMPRLYFLYQMEQLCSPWITEEYIKVAMGALSIWDFAPSHTEYWRKS-------GLSSVYVPLSIPLHWLAPNTIRNIQVKKKIHQKTDVLFFGSSNARRRQIQETLEARLAAVGYTCTFYMDSDHLLFGQDRDAVVDNAAVVLNLHYYEHAALEVHHINYLLARGKCVLSEWSVDSHLDSVYSAAVAF 278
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: Q6U8B0_RAOTE (Putative N-acetyl glucosaminyl transferase n=24 Tax=Klebsiella/Raoultella group TaxID=2890311 RepID=Q6U8B0_RAOTE) HSP 1 Score: 108 bits (270), Expect = 3.520e-22 Identity = 76/207 (36.71%), Postives = 106/207 (51.21%), Query Frame = 1 Query: 202 LFIVLGGHLFEELPTTGILVNYEQ-MSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPAD--AFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYA--LFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWL 807 L IV+ +F++LP I EQ ++S W TE Y A L +A + D+S +N+ L+Q Q + +P+ AD A+ G SD +GD DVLFYG N R R+ L+ F+ A +FG + + ARVV+N+HYYEDA LE RL L+ G +VSE SAD E + + F DI A+V L Sbjct: 630 LHIVVCPQMFKQLPKHYIAFQMEQSVNSRWFTEEYFARLNNAVAIFDYSLKNIEYLLQQGTPYQKLFYMPISSYADYPAYLTQIGYDLSDRKGDKAADVLFYGDPNCER----RKAYLQELKKHFNVTVASEVFGDRLTKMVKDARVVINIHYYEDALLETTRLYETLSLGTPIVSESSADIEEHQDLQGVIDFCPVGDIQAMVEKL 832
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A1J5QAG8_9ZZZZ (Methyltransferase domain protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5QAG8_9ZZZZ) HSP 1 Score: 105 bits (263), Expect = 1.360e-21 Identity = 89/257 (34.63%), Postives = 123/257 (47.86%), Query Frame = 1 Query: 67 ECFLETAEGLHDVLQRLGLASTISALAPGAEATPPWSEAFSNHLLLFIVLGGHLF---EELPTTGILVNYEQMS--SPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGSSDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWLSRSDD 822 E F E AE + L+ G + S A A P IV G +L ELP I+ N EQ+ S WM E Y + LRS VV D+S RN++ L + + LP+ +I P A +DVLFYG N RR ++ L AAG A + ++G ER +ARA++VLN+H+YE EV R++ LL+ G CVVSE D ++ + AVAF+ Y+ + L R DD Sbjct: 24 EAFREIAETVVHGLRGAGHDAVFSETAFVAGRIP-------------IVFGANLVGHTAELPAHAIVYNLEQIEDGSVWMNELYLSILRSH-VVWDYSARNIAAL--KARGITNVHHLPIGYVRQLERIEPAAVKD-------IDVLFYGSMNPRREHVISALKAAG--ANVVSVFGVYGHERDALIARAKIVLNIHFYESKIFEVVRVSYLLSNGVCVVSEDGPDP-IEKAYSDAVAFSSYEQLVQACMTLLRDDD 254
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: UPI001F3007D2 (hypothetical protein n=1 Tax=Acidovorax sp. BoFeN1 TaxID=1231053 RepID=UPI001F3007D2) HSP 1 Score: 105 bits (263), Expect = 2.060e-21 Identity = 83/208 (39.90%), Postives = 105/208 (50.48%), Query Frame = 1 Query: 205 FIVLGGHLFEELPT--TGILVNYEQ-MSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAG------SSDNEGDDC-VDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYALFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVV 798 + V+ +F+ LP I V EQ +SS W T Y + L ++ V D++ NL Q L+ R Y VP F G G S +G D DVLFYG NA R + L L+A G R + LFGPE RAMA ARVV+NLHYYE A LE R+ L+ G VVSE SADQ + AV F D+PA++ Sbjct: 133 YFVVCPQMFKRLPPGEKRIAVQMEQSVSSRWFTPDYLSTLENSLAVIDYAQTNL----QFLEGRGIAYPHTFLVPVGGFA---GYGEYLRHNSLHAQGLDVPCDVLFYGDVNAPRRQQL--LAAIGERYQLRIVGNLFGPELHRAMASARVVVNLHYYEGALLETTRIHECLSLGVPVVSETSADQSEHSALEGAVRFVPVGDVPALL 331
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Match: A0A808Y2Z6_9ENTR (Uncharacterized protein n=5 Tax=Raoultella TaxID=160674 RepID=A0A808Y2Z6_9ENTR) HSP 1 Score: 104 bits (260), Expect = 6.940e-21 Identity = 74/207 (35.75%), Postives = 105/207 (50.72%), Query Frame = 1 Query: 202 LFIVLGGHLFEELPTTGILVNYEQ-MSSPWMTETYCAALRSAAVVCDFSDRNLSTLVQSLQLRQPCYTLPVYVPADAFQILPGAGS--SDNEGDDCVDVLFYGCANARRTEMLRRLSAAGLRAEFHFEYA--LFGPERARAMARARVVLNLHYYEDAALEVHRLAPLLAAGCCVVSEPSADQELDARFRSAVAFARYDDIPAVVSWL 807 L IV+ +FE+LP I EQ ++S W TE Y A L +A + D+S +N+ L+Q Q + +P+ AD L G S+ +GD DVLFYG N R R+ L+ F+ A +FG + + ARVV+N+HYYEDA LE RL L+ G +VSE S+D E + + F DI ++V L Sbjct: 612 LHIVVCPQMFEQLPKHYIAFQMEQSVNSRWFTEDYFARLNNAVAIFDYSLKNIEYLLQQGIAYQKLFYMPISSYADYPSYLSQIGYDLSEKKGDKAADVLFYGDPNCER----RKAYLQELKKHFNVTVASEVFGDRLTKMVNDARVVINIHYYEDALLETTRLYETLSLGTPIVSESSSDIEEHQDLQGVIDFCPVGDIQSMVEKL 814 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169726 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9642 ID=mRNA_9642|Name=jgi.p|Trimin1|169726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1050bp|location=Sequence derived from alignment at Contig_66:95053..96102+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGGTTCTCGTACAGGAGACATCGCCGAGACATGCGCTAGTTGTTCAback to top protein sequence of jgi.p|Trimin1|169726 >Trimin1|169726|e_gw1.66.5.1 ID=Trimin1|169726|e_gw1.66.5.1|Name=jgi.p|Trimin1|169726|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=350bp MSVLVQETSPRHALVVHILYRGECFLETAEGLHDVLQRLGLASTISALAPback to top mRNA from alignment at Contig_66:95053..96102+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9642 ID=mRNA_9642|Name=jgi.p|Trimin1|169726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1050bp|location=Sequence derived from alignment at Contig_66:95053..96102+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:95053..96102+ >mRNA_9642 ID=mRNA_9642|Name=jgi.p|Trimin1|169726|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1050bp|location=Sequence derived from alignment at Contig_66:95053..96102+ (Tribonema minus UTEX_B_3156 )back to top |