mRNA_9640 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA) HSP 1 Score: 456 bits (1174), Expect = 1.400e-160 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
Query: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF 849
RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF
Sbjct: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGPPTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRTGVCPCAMWCCRALLGARCVARVCSQPHLVTWSSTIF 283
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI) HSP 1 Score: 232 bits (591), Expect = 1.470e-69 Identity = 124/210 (59.05%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAA-----------PVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESAL 597
RK+KILMLGDTGVGKSSL+ RFT+D F G+VGTVGVDFK+RT+++ GE++ VQVWDTAGQERFHKITRAYY G GILLAYDVGEP TLENISYWI NI+DNAS V TCLVGNK DL+ + L+ CVSASP+ + V T+SG+ IA++YGV FFE SAKTG+NV+ AF+SL+E +
Sbjct: 254 RKIKILMLGDTGVGKSSLIQRFTDDTFHAGMVGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNASKDVRTCLVGNKADLKVRAISPYQ------------------LNWCVSASPQGSGRKRSWECPPVQVETESGQQIAEEYGVNFFEASAKTGYNVNEAFLSLLEGVV 445
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.030e-47 Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 1
Query: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
RK+K+LMLGD+GVGKSSLM+RF ED F V T+GVDFK++T+ L E V +QVWDTAGQ++FHKIT+AYYRGSHGI+L YD+ +P TL+N +YW+ +I+D A S V CLVGNK+DLR E A V T +GR +A+++G +FE SAKTG V AF++ A EA
Sbjct: 52 RKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKVDLREEVGLEGQQQDL------------------------AGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEA 229
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.390e-46 Identity = 96/202 (47.52%), Postives = 126/202 (62.38%), Query Frame = 1
Query: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
RK+K+LMLGD+GVGKSSLM+RF ED F V T+GVDFK++T+ L E V +QVWDTAGQ++FHKIT+AYYRGSHGI+L YD+ +P TL+N +YW+ +I+D A S V CL+GNK+DLR E V T +GR +A+++G +FE SAKTG V AF++ A EA
Sbjct: 942 RKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKVDLREEVGREEQQQDLSGM------------------------VETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEA 1119
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A836C8W2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W2_9STRA) HSP 1 Score: 164 bits (416), Expect = 3.160e-46 Identity = 87/205 (42.44%), Postives = 120/205 (58.54%), Query Frame = 1
Query: 7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASS----GVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAAD 609
++IL+LGD+GVGK+SLM R+TED F P L+ T GVDFK+R LD+ G RV Q+WDTAGQE+FH ITRAYYRG+HGI L YDV + + +N++YW+ NIQ +A + G+C L+GNK+DL E V + +G + +++GV +FE SAK G V AF +L +E +
Sbjct: 3 IRILLLGDSGVGKTSLMLRYTEDHFSPNLLSTAGVDFKVRHLDINGRRVRCQIWDTAGQEKFHVITRAYYRGAHGIALVYDVADADSFKNVNYWVANIQTHAPAAGREGICKVLLGNKVDLPAEHRE----------------------------------VSSAAGNEVGEEFGVRYFEVSAKDGTGVQDAFDTLAREIVEGLE 173
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A6P6SVL0_COFAR (ras-related protein RABE1a-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6SVL0_COFAR) HSP 1 Score: 162 bits (411), Expect = 7.640e-46 Identity = 87/192 (45.31%), Postives = 116/192 (60.42%), Query Frame = 1
Query: 7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL 582
VK+L++GD+GVGKS ++ RF ED F + T+G+D K+RT++L G+R+ +Q+WDTAGQERF IT AYYRG+ GILL YDV + ++ NI WI NI+ +AS V T LVGNK D+ S +A P T G+A+A +YGV FFETSAKT HNV+ F S+
Sbjct: 16 VKLLLIGDSGVGKSCILLRFCEDSFTTSFISTIGIDLKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNTILVGNKADM--------------------------------DESKRAVP--TSRGQALANEYGVKFFETSAKTNHNVNEVFFSI 173
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A482RSH1_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSH1_9ARCH) HSP 1 Score: 165 bits (417), Expect = 8.880e-46 Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = 1
Query: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 603
R+VKIL+LGD+GVGKSSL+ R+T D F P L TVGV+FK + + +GE + VQVWDTAGQE+FHKIT +YY+G+ GI+L YDV + +L N+ YWI NI+ +AS V LVGNK+DLR A P + + G+ I+ ++GV FFETSAK NV AF++LV +A
Sbjct: 51 RRVKILLLGDSGVGKSSLIVRWTHDTFSPSLASTVGVNFKNKKIAYKGECLQVQVWDTAGQEQFHKITTSYYKGAQGIMLVYDVADANSLANVEYWIKNIKTHASDSVHVVLVGNKIDLR-------------------------------HADPDKKYIDMNRGKEISHKFGVPFFETSAKDSSNVEHAFMTLVGDIADA 220
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: C1E6E1_MICCC (Ras-related gtp-binding protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6E1_MICCC) HSP 1 Score: 162 bits (409), Expect = 9.750e-46 Identity = 84/208 (40.38%), Postives = 124/208 (59.62%), Query Frame = 1
Query: 7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL---VESALEAADAGCG 621
+K+L++GD+GVGKS L+ RF+ED+F + T+G+DFK+RT++L G+RV +Q+WDTAGQERF IT AYYRG+HGILL YDV + + N+ W+ NI+ +AS GV LVGNK D + + T+ G A+A+++G+ FFETSAK NV+ AF ++ +++ L+ + G G
Sbjct: 12 IKLLLIGDSGVGKSCLLLRFSEDQFTSSFITTIGIDFKIRTVELDGKRVKLQIWDTAGQERFRTITNAYYRGAHGILLTYDVTDEGSFNNVRNWMRNIEQHASDGVSKVLVGNKSDAEEKRV-----------------------------------ISTEQGEALAKEFGIPFFETSAKANTNVNDAFFAIARIIKAGLKTSGDGGG 184
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: UPI0009017E4D (ras-related protein RABE1c-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009017E4D) HSP 1 Score: 161 bits (407), Expect = 2.540e-45 Identity = 89/211 (42.18%), Postives = 125/211 (59.24%), Query Frame = 1
Query: 7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSL---VESALEAADAGCGPPT 630
+K+L++GD+GVGKS L+ RF+ED F + T+G+DFK+RT++L G+R+ +Q+WDTAGQERF IT AYYRG+ GILL YDV + ++ +NI W+ NI+ +AS V L+GNK D+ S K P T G+A+A +YGV FFETSAKTG+NV F ++ ++ L AD+ P T
Sbjct: 11 IKLLLIGDSGVGKSCLLLRFSEDSFTQSYITTIGIDFKVRTIELDGKRMKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFDNIRNWMKNIEQHASDTVNKILIGNKADM--------------------------------DESKKVVP--TSRGQALADEYGVKFFETSAKTGYNVEQGFFAIAGDIKQRLAEADSKAEPST 187
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Match: A0A1E3QB79_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3QB79_LIPST) HSP 1 Score: 160 bits (406), Expect = 2.750e-45 Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = 1
Query: 7 VKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSGVCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEAADAGCGP 624
+K+L++GD+GVGKS L+ RF+ED F P + T+G+DFK+RT+DL G+R+ +Q+WDTAGQERF IT AYYRG+ GILL YDV + + NI W +N++ +AS GV L+GNK D + A V T+ G+A+A + G+ F E SAK NV AFVSL + D P
Sbjct: 11 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIDLDGKRIKMQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRNWFSNVEQHASEGVNKLLIGNKCDWEEKRA-----------------------------------VSTEQGKALANELGIPFIEASAKANINVEEAFVSLARQIKQRVDLASEP 181 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169653 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=852bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCAAGGTCAAGATCCTCATGCTGGGCGACACGGGCGTGGGCAAGAGCTCback to top protein sequence of jgi.p|Trimin1|169653 >Trimin1|169653|e_gw1.66.25.1 ID=Trimin1|169653|e_gw1.66.25.1|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERback to top mRNA from alignment at Contig_66:72536..74829- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2294bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:72536..74829- >mRNA_9640 ID=mRNA_9640|Name=jgi.p|Trimin1|169653|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_66:72536..74829- (Tribonema minus UTEX_B_3156 )back to top |