mRNA_9627 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348670
Unique NamemRNA_9627
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A835Z1R2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R2_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 3.240e-136
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1 
Query:    1 MSGPLSAAALDAARQELLQQEMEFCATLPTLQQPSFLAGRLAVRRALLAQQHRYSGCSGDGGGEALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEVGAVHLRTVIG 726
            MSGPLSAAALDAARQELLQQEMEFCATLPTLQQPSFLAGRLAVRRALLAQQHRYSGCSGDGGGEALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEVGAVHLRTVIG
Sbjct:    1 MSGPLSAAALDAARQELLQQEMEFCATLPTLQQPSFLAGRLAVRRALLAQQHRYSGCSGDGGGEALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEVGAVHLRTVIG 242
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7S4T7K3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T7K3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.920e-11
Identity = 68/214 (31.78%), Postives = 99/214 (46.26%), Query Frame = 1 
Query:   58 QEMEFCATLPT-LQQPSFLAGRLAVRRALLAQQHRYSGCSGDGGGEALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            +E+ +   LP+   Q +F  GRLA+R ALLA  H  S         AL A +A   A  ILK E G P +P  V+GSI+HK +  VA+VS+      G+ +                   D  + C      ++  RILT  E  ++                              G+T E++VLLRFS+KES+YKA+ P + +Y+GF+EAE+
Sbjct:  146 KEVAYAMNLPSQTSQDTFFVGRLAMRHALLAS-HTSSFA-------ALPAVSADDAA--ILKDEHGRPTMPKGVLGSITHKKKTGVALVSSASTRRRGVGV-------------------DLEQTCT--GRRSIARRILTEGEILNL--------------------------GCVEGVTKEEEVLLRFSLKESVYKAMHPLLNQYIGFKEAEI 302
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7S2A1R9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1R9_TRICV)

HSP 1 Score: 65.9 bits (159), Expect = 9.310e-9
Identity = 63/208 (30.29%), Postives = 93/208 (44.71%), Query Frame = 1 
Query:  103 SFLAGRLAVRRAL--LAQQHRYSGCSGDGGGEALAAAAAALRAGP--------ILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            SF AGRLA+R AL  LA+Q +     G   G + ++  +  R GP        IL+   G P +P   +GSISHK    VA+VS           +D  GG      R    D + +         ++  ++LT  E + +                              G+T  ++VLLRFS+KES+YKAL P + +Y+GF+EAE+
Sbjct:   80 SFFAGRLAIRAALGSLAKQQQEEE-QGTAEGSSASSVPSVPRIGPSSSSSFPPILRDGHGRPTVPDGFLGSISHKRVTGVALVSR---------DDDNKGGKRGRPRRGVGVDIEQTR----SRRMSIERKVLTKGELDDL--------------------------GKLEGVTRSEEVLLRFSLKESVYKALHPLLTQYIGFQEAEI 247
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A4D9CTH4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTH4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-8
Identity = 51/156 (32.69%), Postives = 78/156 (50.00%), Query Frame = 1 
Query:  232 ILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTN-LGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            +L+ E G P LPS V  SISHK  +A+ ++ +         +E+    A       S    D  E+C    +TN +  R+LT  E++ + G                         ++LG++ E ++LLRFS+KES+YKA+ P +RRYV F+EAEV
Sbjct:  138 VLRDEKGAPALPSHVQASISHKQDLAICLLRS---------VEEDPNRAL------SNIGVDI-EICQPRPSTNSIATRVLTRREQDELGGL------------------------ASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEV 253
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: W7TPT1_9STRA (4-phosphopantetheinyl transferase entd n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.610e-8
Identity = 51/156 (32.69%), Postives = 78/156 (50.00%), Query Frame = 1 
Query:  232 ILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTN-LGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            +L+ E G P LPS V  SISHK  +A+ ++ +         +E+    A       S    D  E+C    +TN +  R+LT  E++ + G                         ++LG++ E ++LLRFS+KES+YKA+ P +RRYV F+EAEV
Sbjct:  222 VLRDEKGAPALPSHVQASISHKQDLAICLLRS---------VEEDPNRAL------SNIGVDI-EICQPRPSTNSIATRVLTRREQDELGGL------------------------ASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEV 337
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A1E7EU12_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU12_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.900e-8
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 1 
Query:  229 PILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            PILK + G PL+   V GSISHK    VA++S        ID  D          R +    D  E+ +    +N+  R+LT  ER+S+                           +  G+T +++VLLRFS+KE++YKA  P + +YVGF+EAEV
Sbjct:   28 PILKDQYGRPLMIQGVYGSISHKEERGVALISL---PEPVIDASD-------SNVRLAGVGIDL-EMTSRPGRSNVSKRVLTINERQSL--------------------------GNIPGITIDEEVLLRFSLKEAIYKAAHPLLCQYVGFQEAEV 146
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7S2U6W9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6W9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.110e-7
Identity = 64/212 (30.19%), Postives = 91/212 (42.92%), Query Frame = 1 
Query:  103 SFLAGRLAVRRALLA--QQHRYSGCSGDGGG----EALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVG--------STTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            SF  GRLA+R AL         S CS +       E +           IL+ + G P LP   +GSISHK    VA+V+  CD                   R   TD++ + +  +G           N+G RILT  E + +                           +  G+T +++VLLRFS+KESLYKA+ P + +YVGF+EAE+
Sbjct:  258 SFYLGRLAMRAALKMPPSSMNVSACSKEEENSQMNECIVLPVVNREEHCILRDQYGRPGLPQGYLGSISHKKNTGVALVA--CD-----------------DERLISTDSNDTPIKGIGVDIEQTFSKNKNIGKRILTERELKEL--------------------------GNIEGVTRDEEVLLRFSLKESLYKAMHPLICQYVGFQEAEM 424
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7S1U184_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U184_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-7
Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 1 
Query:  226 GPILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQ-----QVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            GPILK   G P LP  V GSISHK  +A+A+   C + +          GA      H   D +        S+ ++  R+LT  ER+ +                            A+GL  E+     +VLLRFS+KESLYKAL P ++RY+ F E EV
Sbjct:  157 GPILKDCFGAPTLPQHVSGSISHKTPVALAL---CAERS----------GAPSGVREHLGVDIEQR---LRPSSVDISRRVLTLEERKQV----------------------------AMGLLGERVPPESEVLLRFSLKESLYKALHPIIQRYIAFHEFEV 274
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7W1B837_9DELT (Enterobactin synthase component D n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1B837_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 3.270e-7
Identity = 56/177 (31.64%), Postives = 80/177 (45.20%), Query Frame = 1 
Query:  229 PILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGT---IGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTNLGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQ---VLLRFSVKESLYKALSPRVRRYVGFREAEV-----GAVHLRTVIG 726
            P+ K + G P+ P+  +GSISHKA  AVA+V+   D T   +G+D+E           R  RT  D +             RILT  E                               +AL   A ++   VLLRFS+KE++YKA+ P +RRYVGF+E E+     G  H+ + +G
Sbjct:   71 PLPKDDRGAPVTPAGWLGSISHKAGHAVALVAPA-DATGARVGVDLE-----------RTDRTRVDIAR------------RILTPREL------------------------------AALPTAASERFRAVLLRFSIKEAIYKAIDPFLRRYVGFQEVELAIADDGTAHVTSALG 193
[Close]
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Match: A0A7S1BC96_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC96_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.320e-7
Identity = 52/158 (32.91%), Postives = 72/158 (45.57%), Query Frame = 1 
Query:  229 PILKAEGGGPLLPSCVVGSISHKARIAVAVVSTCCDGTIGIDIEDVGGGAXXXXXRHSRTDADASELCAVGSTTN--LGLRILTAAERESICGSXXXXXXXXXXXXXXXXXXXXXXXESALGLTAEQQVLLRFSVKESLYKALSPRVRRYVGFREAEV 696
            PIL+   G P LPS  VGSISHK  +A A+V          D++D          +  R      ++  V S +   LG R+LT  ER ++                           +  G+T  ++VLLRFS+KESLYKAL P    ++GF+E EV
Sbjct:  231 PILRDGHGRPALPSGYVGSISHKQTLAAALV----------DLDD------DNFWKRDRVRGIGVDIERVMSKSGSALGRRVLTERERGAL--------------------------GNIPGVTELEEVLLRFSLKESLYKALHPLFETFIGFQEVEV 346
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348670 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835Z1R2_9STRA3.240e-136100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4T7K3_9STRA1.920e-1131.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2A1R9_TRICV9.310e-930.29Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A4D9CTH4_9STRA1.080e-832.69Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPT1_9STRA1.610e-832.694-phosphopantetheinyl transferase entd n=1 Tax=Nan... [more]
A0A1E7EU12_9STRA7.900e-833.33Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2U6W9_9STRA1.110e-730.19Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1U184_9STRA1.530e-733.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7W1B837_9DELT3.270e-731.64Enterobactin synthase component D n=1 Tax=Deltapro... [more]
A0A7S1BC96_9STRA4.320e-732.91Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:1066731..1070641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348670|estExt_Genemark1.C_Ctg_290127
Description4'-phosphopantetheinyl transferase superfamily
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2EAJI@1|root,2SGT3@2759|Eukaryota
Evalue1.77e-20
Seed ortholog2880.D7FQQ5
Hectar predicted targeting categoryother localisation
Ec32 ortholog description4'-phosphopantetheinyl transferase superfamily
Ec32 orthologEc-01_000130.1
TranscriptId348992
TrackFilteredModels1
ProteinId348670
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348670gene_9627Tribonema minus UTEX_B_3156 geneContig_29 1066731..1070641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348670Trimin1|348670|estExt_Genemark1.C_Ctg_290127Tribonema minus UTEX_B_3156 polypeptideContig_29 1066731..1070485 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9627_1exon_9627_1Tribonema minus UTEX_B_3156 exonContig_29 1066731..1066736 +
exon_9627_2exon_9627_2Tribonema minus UTEX_B_3156 exonContig_29 1067338..1067430 +
exon_9627_3exon_9627_3Tribonema minus UTEX_B_3156 exonContig_29 1068301..1068547 +
exon_9627_4exon_9627_4Tribonema minus UTEX_B_3156 exonContig_29 1069991..1070339 +
exon_9627_5exon_9627_5Tribonema minus UTEX_B_3156 exonContig_29 1070452..1070641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9627CDS_9627Tribonema minus UTEX_B_3156 CDSContig_29 1066731..1066736 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9627UTR3_9627Tribonema minus UTEX_B_3156 three_prime_UTRContig_29 1070486..1070641 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Trimin1|348670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=885bp|location=Sequence derived from alignment at Contig_29:1066731..1070641+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGGCCCCTGAGTGCTGCTGCGCTGGATGCTGCCAGGCAGGAGCT
TCTGCAGCAGGAAATGGAGTTCTGCGCCACTCTGCCCACCTTGCAACAGC
CAAGCTTTTTGGCGGGGCGCCTGGCTGTGAGACGAGCGTTACTGGCGCAG
CAGCACAGATACAGCGGCTGCAGCGGCGACGGCGGCGGCGAGGCACTGGC
TGCAGCCGCTGCAGCGCTGCGGGCTGGGCCCATCCTGAAGGCGGAAGGGG
GGGGTCCCCTGCTGCCAAGCTGTGTAGTGGGGTCGATCAGCCACAAGGCA
CGGATTGCGGTGGCTGTTGTCAGCACGTGCTGCGATGGAACCATAGGCAT
CGACATTGAAGACGTGGGCGGCGGCGCGGCGCGGCGGCGGCGGCGACACA
GCCGGACAGACGCCGATGCCAGCGAACTCTGCGCAGTTGGCAGCACCACC
AACCTGGGCTTGCGCATCCTCACTGCGGCGGAGCGCGAGAGCATCTGCGG
CAGCGGCGACGGCGACGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCG
GCGGCGGCGGCGATGGCAGCGGGGAGAGCGCGCTAGGGCTGACGGCGGAG
CAGCAAGTGCTGCTGCGCTTCAGCGTGAAGGAGAGCCTGTACAAGGCACT
CTCGCCGCGCGTGCGCCGCTACGTCGGCTTCCGCGAGGCGGAGGTGGGGG
CAGTGCATCTCAGGACGGTGATAGGGTGAGCTCCGGGCACCATTCAGGGT
CGGCATTCGAAGTCCGTGACTTTAGTTTAGCGAGAGGTGAAAGGCCTCAA
GGGGGGGCTCGCTTACGAGCTCTGCAGGGCTCCCATGGGGGCGCTATGGG
GGGCCCAGTTTACATCAAGTTGTTGTTGAAGGAGG
back to top

protein sequence of jgi.p|Trimin1|348670

>Trimin1|348670|estExt_Genemark1.C_Ctg_290127 ID=Trimin1|348670|estExt_Genemark1.C_Ctg_290127|Name=jgi.p|Trimin1|348670|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MSGPLSAAALDAARQELLQQEMEFCATLPTLQQPSFLAGRLAVRRALLAQ
QHRYSGCSGDGGGEALAAAAAALRAGPILKAEGGGPLLPSCVVGSISHKA
RIAVAVVSTCCDGTIGIDIEDVGGGAARRRRRHSRTDADASELCAVGSTT
NLGLRILTAAERESICGSGDGDGGGGGSGSGGSGGGGDGSGESALGLTAE
QQVLLRFSVKESLYKALSPRVRRYVGFREAEVGAVHLRTVIG*
back to top

mRNA from alignment at Contig_29:1066731..1070641+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Trimin1|348670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3911bp|location=Sequence derived from alignment at Contig_29:1066731..1070641+ (Tribonema minus UTEX_B_3156 )
ATGTCAGTCAGTCACTTTCAGACGAGCAAGGAACCTACTACTGGCCCCAG
ATGATGCTGGAGAGTCACTAACAGCAGTTGAAGAAGGCAGTGTGTGAGAG
CAATCGGGGGAGGTGTGCATCTTACTGTGATGTCCATGTAAGAAAAGAAG
TGATACTGTACGTATGGACTTGTATTTATAAAGGCCCAAGGGAGGCCGGG
TTGCCATGCAATCGAAAAGCTTGCGTCAACGCAGCAGCCTAGTCTGCGTG
ATACTGTACTTCAAACACCATCTCGCACACACATGAACTGGAGAGTCACT
ACTTCCCGCAGTTGAAGAAGGAAAGTGCGAATCTCACCATCCGCGTTGTG
TGAGCATGCCTAAGCGCCCTCGTGTGGTGGTGCAGGGCTCTGCACAACGC
TCATTGGCGATGATGGCGGTGTGCTCGCTTGTGGGAACTGCACGCGGACT
GCTGCTGCATTCGGCATGTCGTTCCCCTTCACTCGCTGCTGTGAGGCGCA
TGGCATCAGTCCTACCAGCGCAGGCTTCCGATACTGCCCAGCTCTGGCCT
GTGGTCATTCACCTGGAGCTTCCTATAGGAACCTGCATTGGAGTACAGCT
GCCGCAGGGGCCCCTGAGTGCTGCTGCGCTGGATGCTGCCAGGCAGGAGC
TTCTGCAGCAGGAAATGGAGTTCTGCGCCACTCTGCCCACCTTGCAACAG
GTACCAAAAAAAAGCTCACTCAGTGTCGTCGCCAGTCCCGCAGTTGAGCG
AGCGATGTTGTCATATTGGGCCTGAGCCAATGACGACCAGCAGGTAGCCA
TCATCAACAGCAACAAGATAGCAATTGCGATGGTGGGCCGCATGCATTAA
GACAGTTGCCTTTGTCATTAGCAAAGTCCTCTTAGGAGATATGGCTCGTG
TGCTGTGGAGACAAGAGCTCTCAAGCATCTTCTACTGGTGCGTGCTACAA
CGGAGTCAGATGTTTCGTGCCTGATGAAGCAGCAGGCAGGCATGTAGACT
GCTGCCGATGCGGTCGTCACTCAGCATGTCCGCACATTATCGGTGGCTGC
TTTCTTCGAGCAAAGCCGTGTGCAGTAGGTGAAGCAACACATGCCGGCGC
TGCATGGCAGATGCGCGCCATTTGCTGCCACTGCATTCTGACACTTGTGG
CAGAGATGGTCGCATCACCTGCCTCCATTTGCGCTTTGATTCAAGCCTTT
GAGCAGTCGTGACATCATCATATCATCGTCGGGCAGCTGCAGATGGCCAT
CCTGATGCATTGCCACGATTTGAGCGCATTTTTTCAAGCTGCCGATGTGC
TATAGCCCGCCGATGTGCTATAGCCCCATGCTGCTGCCGTTGTTTGAACG
AAATCTGCGTGTTGCTGTGCCGTATGCCCAGCCACGATTTCTGGCGGGGC
GGCTCACTGTGAGGCGAGCGCTGCTGGCGCAGCAGCACAGATGATATCTA
CACCTGATATGCCGCGATGCAAACGCAAATTTCATTTCCAAGCCGCTGAT
CTGCTGACGAGGCCTCATGCCGCTGCTGCTGCACGAATGAAATCTGCGTG
TTGCTGTGCCGTATGCCCAGCCAAGCTTTTTGGCGGGGCGCCTGGCTGTG
AGACGAGCGTTACTGGCGCAGCAGCACAGATACAGCGGCTGCAGCGGCGA
CGGCGGCGGCGAGGCACTGGCTGCAGCCGCTGCAGCGCTGCGGGCTGGGC
CCATCCTGAAGGCGGAAGGGGGGGGTCCCCTGCTGCCAAGCTGTGTAGTG
GGGTCGATCAGCCACAAGGCACGGATTGCGGTGGCTGTTGTCAGCACGTG
CTGCGATGGAACCATAGGTGAGTGGTGTGTCTGCACGAGCGTACTTGAAG
TGTACTGAGGTACACTGTTGAAGTATACTTTGAAGTGATGCGTACGCAGG
AGCGCGGACTTCATGCATGCGGCCTACTCAGCAGCAGGCCATCAGAAGTC
TGTTGACAGAACCCTGACCCCAACCCTAAGTGGGCCAGCGCACTTGTCAA
CAAAGTGCGAGTAGTGCACACTTGCCTCAACTCTGTGTTGAAGCAACGCT
GCAGCTGCAAATGTGTGAGATCAGTTTCTACTGCTTCGCATCGCCATTCA
GCATGAGTATACAGTGTCCTACACCAGCCACACCTGCTGCGCGGTGGTGC
AACCACGGTGGTATAGTGTGCACATACATTTCGCTCCACTTTGTCGAAAT
TTATATTTCATGTTGTGAATTCATTCAATGATTTGGCGCCTGTTTCCTCT
GGCACAGTGTCAAGAAACACGTCAATGCCAGTTGAGCCTTAAGAGCCAAC
CAGTACCATGCAAGCAACGTACAAATGTGCATTTTGCCAGCATGTCCAGC
ACAAAGCCGAGCGGCAACATCATTACTACACGTCATGTGCGCATGTCAAC
AGCTGAGCGCTGTGACCACATCAACTTCAACTTTATTAACAAGCTCGCTT
TGCCAGGTATTGATTAGTGTTCAAAGAAAGGACGCTGGTTGTGCAACTTC
TTGCTACTTTTCTAATCTCATACATATCTCAAGGCCTGTGCGTGCGGCAA
ATCTGACGCCTGTTTAGACTCTGTTGTGTGCGATGGTGGCCATATCTGCA
GCTTCTTCCTGCACGGCCACCATGCATTGTCGCTGTGCTTCAAGAAAAAC
GGCAGAGACAATGGTTGTAATTACAATGCACGCCCACTCGCGGCCATGAA
TTGCCACTTATATGTATCACCAGTTACGTACAGCGATGCACTCAACATCC
GCGAATGTTGGAATCCACTCGCACTGCGCTACTCACTCTTTGACTGACTC
ATGCATTGACCGCCGCAAGCGAAACTGCCGTCGGGCTTGGAGCGGTCATG
TAACTGCATGCAACTGCCACCGTGCCTCAACACACATCATTACCATCGAC
CGCGCCGTGCACGCTTGCGCTAGTCTCGCTACGCCACTCACCCTTTGACG
CATGCACCAACCGCGTGCCTCGACACGTATGATACCATCAATCACAACCA
ACATTGGAATCCAGCCGAGCTGCGCCATTCACCCTTCAACTCAGAGAGAA
CAAGCGCTGCACGCTGCGCCACTCACACTGTCTGCCGCACGCATCAACCA
CTGCGCACGCACTGACGTTGGATTGAGCCAGGCACGCTGCGCCATTCACT
TTCTGACGCACGCACCAAACCGCTGCGCAGGCATCGACATTGAAATTGAG
CCAGTTTTTGTCACGCTGTGCCATTCACTCTCTATGTCGCATGCACAATC
CGCTGCGCAGGCATCGACATTGAAGACGTGGGCGGCGGCGCGGCGCGGCG
GCGGCGGCGACACAGCCGGACAGACGCCGATGCCAGCGAACTCTGCGCAG
TTGGCAGCACCACCAACCTGGGCTTGCGCATCCTCACTGCGGCGGAGCGC
GAGAGCATCTGCGGCAGCGGCGACGGCGACGGCGGCGGCGGCGGCAGCGG
CAGCGGCGGCAGCGGCGGCGGCGGCGATGGCAGCGGGGAGAGCGCGCTAG
GGCTGACGGCGGAGCAGCAAGTGCTGCTGCGCTTCAGCGTGAAGGAGAGC
CTGTACAAGGCACTCTCGCCGCGCGTGCGCCGCTACGTCGGCTTCCGCGA
GGCGGAGGTGTATCCGCGCGCTGCAACTGCAACTTCAACTCCAACTTCAT
TTCCAACTTCAACTTCAACTTCAAGCTCTGCTGAGAGCGCTCGTGGCTCT
GCCGGTTGGAACGATGGGCAGGGGGGCAGTGCATCTCAGGACGGTGATAG
GGTGAGCTCCGGGCACCATTCAGGGTCGGCATTCGAAGTCCGTGACTTTA
GTTTAGCGAGAGGTGAAAGGCCTCAAGGGGGGGCTCGCTTACGAGCTCTG
CAGGGCTCCCATGGGGGCGCTATGGGGGGCCCAGTTTACATCAAGTTGTT
GTTGAAGGAGG
back to top

Coding sequence (CDS) from alignment at Contig_29:1066731..1070641+

>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Trimin1|348670|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_29:1066731..1070641+ (Tribonema minus UTEX_B_3156 )
ATGTCAGGGCCCCTGAGTGCTGCTGCGCTGGATGCTGCCAGGCAGGAGCT
TCTGCAGCAGGAAATGGAGTTCTGCGCCACTCTGCCCACCTTGCAACAGC
CAAGCTTTTTGGCGGGGCGCCTGGCTGTGAGACGAGCGTTACTGGCGCAG
CAGCACAGATACAGCGGCTGCAGCGGCGACGGCGGCGGCGAGGCACTGGC
TGCAGCCGCTGCAGCGCTGCGGGCTGGGCCCATCCTGAAGGCGGAAGGGG
GGGGTCCCCTGCTGCCAAGCTGTGTAGTGGGGTCGATCAGCCACAAGGCA
CGGATTGCGGTGGCTGTTGTCAGCACGTGCTGCGATGGAACCATAGGCAT
CGACATTGAAGACGTGGGCGGCGGCGCGGCGCGGCGGCGGCGGCGACACA
GCCGGACAGACGCCGATGCCAGCGAACTCTGCGCAGTTGGCAGCACCACC
AACCTGGGCTTGCGCATCCTCACTGCGGCGGAGCGCGAGAGCATCTGCGG
CAGCGGCGACGGCGACGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCAGCG
GCGGCGGCGGCGATGGCAGCGGGGAGAGCGCGCTAGGGCTGACGGCGGAG
CAGCAAGTGCTGCTGCGCTTCAGCGTGAAGGAGAGCCTGTACAAGGCACT
CTCGCCGCGCGTGCGCCGCTACGTCGGCTTCCGCGAGGCGGAGGTGGGGG
CAGTGCATCTCAGGACGGTGATAGGGTGA
back to top