mRNA_9613 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348660
Unique NamemRNA_9613
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835Z0K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K3_9STRA)

HSP 1 Score: 469 bits (1207), Expect = 5.280e-167
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
Query:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 723
            MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR
Sbjct:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 241          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835YGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX0_9STRA)

HSP 1 Score: 226 bits (577), Expect = 6.030e-69
Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1
Query:  211 LSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIP-RMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPS 693
            LS  LRSFAA+SFSLR F+L+VNAP+DVFVYG+Y AGVPQDEEN+ELLRG+ATAFVLEPF  IP RM+WQW +IRN+L+MATAYADARG PY A+VR+RPDTVYLTPLHLD LLS+  ++ L+RPYF A  +KS+AELN +A++ +PVL+ +    PAFFPS
Sbjct:  103 LSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTA----PAFFPS 260          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835Z267_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z267_9STRA)

HSP 1 Score: 1921 bits (4976), Expect = 0.000e+0
Identity = 1292/1292 (100.00%), Postives = 1292/1292 (100.00%), Query Frame = 1
Query:    1 MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM 3876
            MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM
Sbjct:    1 MSSVPASTVDDSEEVRVLFAAADAGRTDILKAAIDAIAAKHADNPSGCLRSDPGVVAAAGPLRGKKAYAVGSPLVKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVAELIQATALIAGAERCRAPPPRIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGALPPPGARGSDPQHATAALSWGWSELAEIQACCSANCMDAVVRWHPELQDLENGSRQGSIQALADFVQQLDSAEVLLDLTRLDRRAAAAADSAHXXXXXXXXXXXXXXXLAPGLEDHISDYIRDVRAVLAACGCDSVVLAGLAWDEVDALRAVLSSEDGAVRCSFVAPDKVAVLRAVLSAGXXXXXXXFAPALPPSEAALASMAAHHRSALCAGAPAYFTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAPPHLRPELLERAAAFCAAGALWSARGEGARLLQHCLSAAASPDSADSKAVLGSLLSAHVLHAGTVAPVSAADGGITPAAVAGLIGALLPISSXXXXXXXXXXXXXXXXXXXXXXXLSAAWSLLCAPMHAHTDGAYSSDAAAADSGSXXXXXXXXXXXAVGVGSSGLSDVMVYLGMRDMEHLRELRLRLADMSRLLASLKAHPLVRQLDATASLLRLACRTLLMAGHYAAPAAGGREGSDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAALPMRLGDAVACVPSSVRLDLANRYLREYELVCNAASRSSAIFNGGTGKLKSASATGKRGSAGASVNGDTTGTSNGSSGGSPDTALSPSDLQQCYRALLAVVDLLTGADAPQRSNGDVCAGVVFGGNSAPVIDRLNDQRVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKDM 1292          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.680e-39
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 3601 RVGMGVGWHRRHSFSIRGPPPAHPPHSLLDDWWNALKNKAPRVSCLWLVRQSDQLLIHVQNTMQVSKNELRKILTTIAGRPVELHSKTWKD 3873
            RVGMG  W RRHSFSIRGPPP+HPPHS LDDWW AL+ KAPRV+CLWLVRQSDQLLIHVQN  QVSKN+LRKIL+TIAGRPVELHS+TW +
Sbjct:  464 RVGMGGDWRRRHSFSIRGPPPSHPPHSALDDWWKALRIKAPRVNCLWLVRQSDQLLIHVQNEPQVSKNKLRKILSTIAGRPVELHSRTWAN 554          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: F0YBV5_AURAN (Glyco_hydro_20b domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBV5_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-7
Identity = 142/517 (27.47%), Postives = 182/517 (35.20%), Query Frame = 1
Query:   37 EEVRVLFAAADAGRTDILKAAIDAIAAK---------------HADNPSGC----LRSDPGVVAAAGPLRGKKAYA-VGSPLV--------KAAFGQELFQQVAQGSTERV-RALLDNGVDVQSLDGSP-SRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPGETCLLAASSS---GGXXXXXXXXXRGPVLLVLGQGVAASVAELI------QATALIAGAERCRAPPP-RIMRARTPLLSDGIAVEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVDGRTVAALAQRDARGA 1467
            EE+RVLFAAA+ GR DI+ +A  ++  K                A N +G     +  D G V A   L    AY  V +P          +AA   EL QQVA G   RV + L   G      D +P   D  LHWAA FG       LL  G  A A N DG+TPL E                     A G            AG    ++     + A+                                    A  E     + +A    P   P  A  +D A   R R PL             +WPPP RC L+ G   L     S   G              L  L   + A  A ++         +    A     P   RI+ AR        AV GADAAGL + A+TL Q++R +      A GS        LPA+ I+D P    RA  +D+R    P  A+      R A+WR NAL +  DG  + A     AR A
Sbjct:   23 EELRVLFAAAEYGRADIVASAAKSLQEKLEAPGDPVDLGRVLGDATNDAGAHLLQVACDHGKVDAVRALLRVGAYPPVAAPAAWLRDGTPCRAAAHAELMQQVALGDVSRVEKCLALLGPSPLLSDCAPFGGDGPLHWAASFGQVAPLEALLAAGVAADALNDDGVTPLHEAAKANHGECVEKLV-------AAGADVALAVAEGTNAGKRACDLATKPDVQAAC-----------------------------------AAPEPPPKKAAAAPAXXPAXXPRPAEGADGAA--RCRAPL-------------VWPPPRRCRLLRGAPDLRLGGPSIVVGVEDPDTAEAAYASALRTLRVEIGARFAVVVGPLGEPHDVSFRLCARSTGGPESYRILVAR-----GAAAVVGADAAGLKHGASTLAQLLRFHASCATEAGGSSTV---FKLPALAIDDGPDASVRAGLVDVRGAAAPRAAQVDDDARRLASWRLNALFVLCDGAGMDAFDGDAARAA 474          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A7S4E820_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E820_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.590e-7
Identity = 153/493 (31.03%), Postives = 194/493 (39.35%), Query Frame = 1
Query:   37 EEVRVLFAAADAGRTDILKAAIDAIAAKHADNPS-----GCLRSDPG------------VVAAAGPLRGKKAYAVGSPL--------VKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPS--RDTALHWAALFGHAGVAALLLDRGADAGAANADGLTPLQEXXXXXXXXXXXXXXXXXXXXXARGXXXXXXXXXXLGAGMSPAEMNAASLLDASARXXXXXXXXXXXXXXXXXXXXXXXXXXPVSEVSEEALVERRXSSSGSAGLQHPLPVPEQAADSDAARAPRQRQPLPHLPAPSTNALALLWPPPERCCLVPG--ETCLLAASSSGGXXXXXXXXXRGPVLLVLGQGVAASVA-ELIQATALIAGAERCRAPPPRIMRARTPLLSDGIA-VEGADAAGLLYAANTLEQIIRLYGRRRAAAAGSQPAGGALLLPAVTIEDAPALLRRAVTLDLRLPHTPSLARALAFIWRAAAWRYNALVLQVD 1422
            EE RVLFAAA+ GR DI+ +A  A+  K A         G  R+D              V A    LR     A  SP+         +AA   EL QQVA G   RV  LL     +  L  + +   D+ LHWAA FG       LL  GA+  A N DG+T    XXXXXXXXXXXXXXXXXXX   R             AG  PA++     L  +                            P  EV                    P P P+++ D +   A R R PL             +WPPP RC L+ G  E     A  S G             L  L   V A    +++ A    + + R  A           L+ DG+A V G DAAGL + A+TL Q++R +    +       A  A  LPA+ ++D P  L RA  LD R    P  A+      R A+WR NAL +  D
Sbjct:   26 EEYRVLFAAAEYGRADIVASAAAALKEKLAPGEDLAEALGAARNDDDASLLEKACSSNKVDAVRALLRVGAIPAAASPVSWLEEGSACRAAAHAELMQQVALGDAGRVTKLLALLGSIPRLSDAATFGGDSPLHWAASFGQEAALEALLAAGAEPCATNDDGVTXXXXXXXXXXXXXXXXXXXXXXXASLR-------ISDGPDAGKLPADLAKNDALQKTLAVST-----------------------PAKEVKTIT----------------PPPSPKRSVDVEDQGAARCRAPL-------------VWPPPRRCRLLRGAPELEFRGAEISVGVHSSIDDARFDAALRTLRVEVGARFGVKVVTANEEHSVSLRVCAKTTGGPEGYRVLVRDGVAAVVGHDAAGLKHGASTLAQLLRFHA---SCGKDEDDALPAFRLPALAVDDGPDALVRAACLDCRGAAAPRNAQIDDDARRLASWRCNALFILAD 456          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A9V9R8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9R8_MONBE)

HSP 1 Score: 59.3 bits (142), Expect = 5.700e-5
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  247 LFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLT 447
            L Q +A      +  LL+ G+ V + DG+ S++T LHWAA F +A    LLLDRGAD  A NA+G T
Sbjct:  104 LLQSIATNDKATITDLLEAGIHVNATDGAASQNTPLHWAAHFANAETLQLLLDRGADPNATNAEGAT 170          
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Match: A0A1S4N319_PEDHC (Glyco_hydro_20b domain-containing protein n=2 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=A0A1S4N319_PEDHC)

HSP 1 Score: 59.3 bits (142), Expect = 5.790e-5
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  223 VKAAFGQELFQQVAQGSTERVRALLDNGVDVQSLDGSPSRDTALHWAALFGHAGVAALLLDRGADAGAANADGLTP 450
            +K  +  EL +  A     RV+ +LD GVDV  +D   ++++ LHWAA +G   V   L+DRGA   A N+ G TP
Sbjct:  112 IKQIYVDELLRATASSDVNRVKQILDAGVDVNCVDTKETKNSPLHWAACYGTGNVIKFLIDRGARVNAVNSCGATP 187          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z0K3_9STRA5.280e-167100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGX0_9STRA6.030e-6969.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z267_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZJK2_9STRA4.680e-3982.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YBV5_AURAN2.000e-727.47Glyco_hydro_20b domain-containing protein n=1 Tax=... [more]
A0A7S4E820_9STRA2.590e-731.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A9V9R8_MONBE5.700e-546.27Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A1S4N319_PEDHC5.790e-539.47Glyco_hydro_20b domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:962742..965596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348660|estExt_Genemark1.C_Ctg_290114
Hectar predicted targeting categorysignal anchor
TranscriptId348982
TrackFilteredModels1
ProteinId348660
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348660gene_9613Tribonema minus UTEX_B_3156 geneContig_29 962742..965596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348660Trimin1|348660|estExt_Genemark1.C_Ctg_290114Tribonema minus UTEX_B_3156 polypeptideContig_29 962742..965596 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9613_3exon_9613_3Tribonema minus UTEX_B_3156 exonContig_29 962742..963065 -
exon_9613_2exon_9613_2Tribonema minus UTEX_B_3156 exonContig_29 965012..965193 -
exon_9613_1exon_9613_1Tribonema minus UTEX_B_3156 exonContig_29 965377..965596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9613CDS_9613Tribonema minus UTEX_B_3156 CDSContig_29 965377..965596 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=726bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGCCCAGCCAGTCTGATGAGGAACTGCTGCAGCCCACTGCAGC
GGAACTGGTCAGCAAGAAGGGCCACAGACGGAAGCTGCTGGCAGCAGCAG
CTGGGCTCGCTGTATGCCTCACACTGGGCGCTTATCAGTTCCTCTTTGAG
GAGAACATCGCGGATGGCATCTTGCTGGAGCCTCCAGATCGCCTGGCGGA
GGCAGGCTCGCTGTCAGCAAGGCTGCGCTCGTTTGCGGCGACATCCTTCT
CGCTGCGGCGGTTTGTGCTGGAGGTCAATGCTCCAATGGACGTTTTCGTC
TACGGAACCTACATTGCCGGCGTGCCCCAGGACGAGGAGAATGTGGAGCT
GCTGCGTGGCTTGGCGACTGCATTCGTGCTGGAGCCGTTTGTCGAAATTC
CCCGCATGATGTGGCAGTGGCAGTCCATACGCAACTCGCTGGACATGGCA
ACGGCCTACGCGGACGCGCGCGGCTCCCCCTACGCCGCCGTCGTGCGCAG
CCGCCCCGACACGGTGTACCTCACGCCGCTCCACCTCGATGCGCTGCTGT
CCAAGTACCTGGACCTGGGCCTGTACCGGCCGTACTTTGCGGCACAGGGC
TTCAAGAGCGACGCGGAGTTGAACTTGACGGCAGAGGTGTCGCAGCCGGT
GCTGGCGGTGAGCAAGGTTGCCCTGCCGGCGTTCTTCCCGTCGTGCGAGG
GCTTCGATGGGGTTACAGACAGGTGA
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protein sequence of jgi.p|Trimin1|348660

>Trimin1|348660|estExt_Genemark1.C_Ctg_290114 ID=Trimin1|348660|estExt_Genemark1.C_Ctg_290114|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=242bp
MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFE
ENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFV
YGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMA
TAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQG
FKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR*
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mRNA from alignment at Contig_29:962742..965596-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2855bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )
ATGTCCTCGCCCAGCCAGTCTGATGAGGAACTGCTGCAGCCCACTGCAGC GGAACTGGTCAGCAAGAAGGGCCACAGACGGAAGCTGCTGGCAGCAGCAG CTGGGCTCGCTGTATGCCTCACACTGGGCGCTTATCAGTTCCTCTTTGAG GAGAACATCGCGGATGGCATCTTGCTGGAGCCTCCAGATCGCCTGGCGGA GGCAGGCTCGCTGTCAGCAAGTGCAGGATCGCTCGAGCCGCATGGCACTT CAAAGCCGGGGGCGATGACAGGCAGTCAGCCCTGTGCAGCTGTGCTTGAC CTTCCCTTAGCAGCGGTATGTGCCGCGCCTGGATCGGCCTGCGGTTGCAA GCCACCTGAGGCCGGCCGCACGGCGAGTCGCTACTGTGTGCTGCTGCCGG GAGGGCTGCGCTCGTTTGCGGCGACATCCTTCTCGCTGCGGCGGTTTGTG CTGGAGGTCAATGCTCCAATGGACGTTTTCGTCTACGGAACCTACATTGC CGGCGTGCCCCAGGACGAGGAGAATGTGGAGCTGCTGCGTGGCTTGGCGA CTGCATTCGTGCTGGAGCCGTTTGTCGAAATTCCCGTCAAGAACAAGACC ACTCACTCTCCGCAGGCAAGTGCCTGTTCGCTTGTGCAAGCGGTGTTCTG GTACCTCGAGGCCATCCTGCCATGGATTTCTGAGGGTATGACCAAGTTGA ACGTCACACAGAAACTTCAATTATGCTCAAGGCTTGTTGTTGAACGTCTC TGCTGTACATGTCACAGCGCAGACTAGGCTGCTGCGTTGACGCAAGCTTT TCGATTGCATAGGCAACCCGGCCTCCCTTGGGCCTTTATAAATACAAGTC CATACGTACATGTAGACGTTGAAGTTGTTGTGATAGTACAATAATGAGAT AGTCGAGAGGCGTATCTATTCTATAGACAACCTTCAGTCAGCCACGTGCA TGATACACAGTATTTGACCTTGCATAGGTAACAAAGACGTATGAACACTA TGGCTGCAAACCAAAAGTGATCTGCTATCACTAAGTTGTTGTTAAAAGGT CGAAGCAGCCTGCTGCAGTCGCAGAGTATGTGCCAAGTATTGCGTTTCAC GACAAGCTATTGTTCTCAGTGATATACCTGATCTGACTGAGGGTGTGTTT TAAACTTCAAGTTATGACATTCACAGCTCCGTTCACACGATGCAGCACGC CTACTGCTGCAGCAGCTGCTGCAAGTGTTGAACATGAGTTCAACTGAGTT TAAGCCTTGAAGATACTGCAGCTGGCGTAGGCAGTGTTTTGAAAGCATAC GGTGACAACAGGCAGTTGCAGGAAGTTGCATGCGATTGTCATATTGCGTA CAACGGCTTTACACCAATGGTACGTTACATACATGCTACAGAGTGCAGTT CCATCAACTTACAAGTGGAATCTGCACGGGCCAGTTTCTCTTCAGAAATC AGTTGCCGATGGATATTCATCTGCCGCGGTGATTGGCATCGTTGTGGACT TACATCACAGTCTGTGGCCCCTGTGTTCACAAGCTCGCATGGTCGTGGGA CACAGTGAGACACGAACCAACACGCTTCACAAGTACTGCATGTACAGCAG CACAGTTCGCAGAGTTACTCAAAGGCTTATGGTGCGGGCGCAGCTGATTG GCACATCATGATGGTCTGCAGTGCATGCCCTCTGTGTTGAGGAGCCTGCT GCACATTGGTACACAGTGGCCGGAGCATCAAAACTGATGAAACATTGAAT GCAACTAGTCAGCCAGACTCAGCGTGTTCAGCACGTGATGTGGCCCGCAA GTTCGTGGAAGAGTTCTCAGCATGACGTATTCTGGCGCCTGTTTTGAAGT TATTTCGCCTCTGGTGTGTGCACTTTTATTTTCTGATCGGGGCGCGCACG CCTCTGCAGTAGAGAGCGATGCAGTACGCTACATGCTCTGGGGTCTTCGG CACCAGGTCTGCTAATCGCTGCGCAACTTCCAAAAGCAACTTCAAGTTGA ACATTTATCATCCTCTCACGTGCGCGCAGGCACGCCCGATACAACTTGAA TGCATCGCGACACCTGTACGGTACTCTGTCGTACCTATGCGACACGACAT CGTACAGTTACCAAGGCACATGCACACGGCGCTTGTGTCGGCAACACCCC TGATGCGCACTCACATGGCTTCTTACATGAGGTTCCTTGCGAGCGCGCTC AACTTCAACTCCATATGCACGTCCCGCCCGCCGCCGCCTAACCCTGCCCC TAACCGTTCTCGCTGCGCACCCGCAGCGCATGATGTGGCAGTGGCAGGCC ATACGCAACACGCCGACTGTCCACAGACATCACTGCCCTGACGCACCTGC CCACCCCACTTCCGCCGCTCTGCACTGCAGCGCATGATGTGGCGGTGGCG GTCCATACGCAACGCACTAGACACGGCCGCGGCCTACTAGACTTTGTTTT GTGCATGCACGCCAACTGTCCACAGCACATCGCTGCCCTCACACATCTGC CCGCCCATTGCAATCATGCTCCGCACTGCAGCGCATGATGTGGCAGTGGC AGTCCATACGCAACTCGCTGGACATGGCAACGGCCTACGCGGACGCGCGC GGCTCCCCCTACGCCGCCGTCGTGCGCAGCCGCCCCGACACGGTGTACCT CACGCCGCTCCACCTCGATGCGCTGCTGTCCAAGTACCTGGACCTGGGCC TGTACCGGCCGTACTTTGCGGCACAGGGCTTCAAGAGCGACGCGGAGTTG AACTTGACGGCAGAGGTGTCGCAGCCGGTGCTGGCGGTGAGCAAGGTTGC CCTGCCGGCGTTCTTCCCGTCGTGCGAGGGCTTCGATGGGGTTACAGACA GGTGA
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Coding sequence (CDS) from alignment at Contig_29:962742..965596-

>mRNA_9613 ID=mRNA_9613|Name=jgi.p|Trimin1|348660|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=726bp|location=Sequence derived from alignment at Contig_29:962742..965596- (Tribonema minus UTEX_B_3156 )
ATGTCCTCGCCCAGCCAGTCTGATGAGGAACTGCTGCAGCCCACTGCAGC
GGAACTGGTCAGCAAGAAGGGCCACAGACGGAAGCTGCTGGCAGCAGCAG
CTGGGCTCGCTGTATGCCTCACACTGGGCGCTTATCAGTTCCTCTTTGAG
GAGAACATCGCGGATGGCATCTTGCTGGAGCCTCCAGATCGCCTGGCGGA
GGCAGGCTCGCTGTCAGCAAGGCTGCGCTCGTTTGCGGCGACATCCTTCT
CGCTGCGGCGGTTTGTGCTGGAGGTCAATGCTCCAATGGACGTTTTCGTC
TACGGAACCTACATTGCCGGCGTGCCCCAGGACGAGGAGAATGTGGAGCT
GCTGCGTGGCTTGGCGACTGCATTCGTGCTGGAGCCGTTTGTCGAAATTC
CCCGCATGATGTGGCAGTGGCAGTCCATACGCAACTCGCTGGACATGGCA
ACGGCCTACGCGGACGCGCGCGGCTCCCCCTACGCCGCCGTCGTGCGCAG
CCGCCCCGACACGGTGTACCTCACGCCGCTCCACCTCGATGCGCTGCTGT
CCAAGTACCTGGACCTGGGCCTGTACCGGCCGTACTTTGCGGCACAGGGC
TTCAAGAGCGACGCGGAGTTGAACTTGACGGCAGAGGTGTCGCAGCCGGT
GCTGGCGGTGAGCAAGGTTGCCCTGCCGGCGTTCTTCCCGTCGTGCGAGG
GCTTCGATGGGGTTACAGACAGGTGA
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