mRNA_9575 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA) HSP 1 Score: 325 bits (834), Expect = 7.000e-112 Identity = 169/178 (94.94%), Postives = 172/178 (96.63%), Query Frame = 1 Query: 1 MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRV-YAMDRNAAAKRVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531 MGDPGPDAVKV DLCAGIGGFSRAVQMAGGRV YAMDRNAAAK VYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCT+ TSARLVRADKGERREG RAALTPLLVHQLTQMQ+PLVVLENVVSIESMTRGQEAFALARERGYH+CFLRL ASDFGPPYQRRRLFVVMARG Sbjct: 1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREG-RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARG 177
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.780e-37 Identity = 83/176 (47.16%), Postives = 98/176 (55.68%), Query Frame = 1 Query: 7 DPGPDAVKVADLCAGIGGFSRAVQMAGGRV-YAMDRNAAAKRVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531 DPGPDA KVADLCAG+GGFSRAVQ+AGGRV YAMD NA+ K +YDANRG GAEL+ DLY + W L +SGAG+ V G PC D++SAR V A+KG YH+ FLR+ ASD GPPY++ RL V ARG Sbjct: 440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG---------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAVFARG 564
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A1Q4BBH7_9HYPH (Cytosine-specific methyltransferase n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BBH7_9HYPH) HSP 1 Score: 74.3 bits (181), Expect = 2.630e-12 Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 V+ +L +G GG S +Q AG + A D A VY R +G+ + DL + LAA ++V GPPC DF++A GER EG RAALT +T ++ ++ENV +A A+ GY L +L+AS +G P +RRRLFV+ Sbjct: 128 VRTVELFSGAGGMSLGLQRAGCEIIQAYDSWDKAVEVY--RRNIGSHVWQADLKDIFRIGPMLAALAPDLIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVTIVRPKWFLMENVPLAARSQAWTDARAMLVNAGYGLTESKLDASLYGVPQRRRRLFVI 285
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI0007DAB334 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucella pseudogrignonensis TaxID=419475 RepID=UPI0007DAB334) HSP 1 Score: 71.2 bits (173), Expect = 2.560e-11 Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 ++ DL G GG S +Q AG + A D A Y R VG+ + T DL + LA+ M+ GPPC D++ A GERREG A++T +T + ++ENV EA A+ + GY L +L+AS +G P R+RLFVV Sbjct: 1 MRAIDLFCGAGGMSLGLQNAGFEIIQAYDAWEPAVATY--RRNVGSHVWTHDLNDILGVGSMLASLQPDMIAGGPPCQDYSVA-------GERREGKNASMTKAFAMLVTIARPKWFLMENVEQARKSRAWAEARAMLVKAGYGLTECKLDASYYGVPQARKRLFVV 158
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A336JXU6_9BRAD (DNA (cytosine-5-)-methyltransferase n=1 Tax=Rhodopseudomonas pentothenatexigens TaxID=999699 RepID=A0A336JXU6_9BRAD) HSP 1 Score: 71.2 bits (173), Expect = 2.750e-11 Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAG-GRVYAMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 ++ +L AG GG S + AG + A D A VY N G ++ +D++ + +A+ M+V GPPC DF++A GER EG RAALT + + +++ENV ++ A+ + GY L RL+AS +G P +RRRLFVV Sbjct: 1 MRAVELFAGAGGMSLGLMRAGIDVIQAYDSWKPAIDVYRRNVGPHVWQMDLKDIF--HVGPMIASLAPDMIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVVIARPEWILMENVPLAARSQSWVDSRAIIVKAGYGLTEARLDASFYGVPQRRRRLFVV 158
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001CFFF0BA (DNA cytosine methyltransferase n=1 Tax=Neorhizobium sp. T786 TaxID=2883104 RepID=UPI001CFFF0BA) HSP 1 Score: 70.1 bits (170), Expect = 7.100e-11 Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELST-RDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 ++V +L +G GG S +Q AG + A D A Y+ N G A ++ +DL + + E+ + ++ GPPC D++SA G R+E A LT ++ ++ ++ENV+ +EA L + GY R+NAS +G P RRRLFV+ Sbjct: 1 MRVVELFSGAGGMSLGLQQAGFEILRAYDAWPVAVENYNRNIGNHAVIADLKDLLS--IVPEILSLTPDLICGGPPCQDYSSA-------GNRKEADNARLTMAFAMIVSIVKPQWFMMENVIGCAKSATWREARMLLKRAGYGFTESRINASHYGVPQSRRRLFVI 158
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001CC903FC (DNA cytosine methyltransferase n=1 Tax=Mesorhizobium sp. ESP7-2 TaxID=2876622 RepID=UPI001CC903FC) HSP 1 Score: 70.1 bits (170), Expect = 7.270e-11 Identity = 59/174 (33.91%), Postives = 84/174 (48.28%), Query Frame = 1 Query: 4 GDPGPDAVKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 G+ G V+ +L AG GG S ++ AG V A D A A VY N G + +D++ + + A ++ GPPC DF+SA GER EG RAALT + + ++ENV +A A+ + GY L +L+AS +G P R+RLFVV Sbjct: 21 GNEGVCRVRAVELFAGAGGMSLGLKRAGFEVVQAYDSWAPAVEVYRRNLGPHIWQADLKDIF--HVGPMITALAPDIICGGPPCQDFSSA-------GERIEGERAALTRAFAMLVCIARPSWFLMENVPRAAQSQAWADARAMLVKAGYGLTESKLDASFYGVPQIRKRLFVV 185
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A1H6H0Z6_9HYPH (Cytosine-specific methyltransferase n=2 Tax=Rhizobium sp. NFR12 TaxID=1566261 RepID=A0A1H6H0Z6_9HYPH) HSP 1 Score: 68.9 bits (167), Expect = 1.790e-10 Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531 ++V +L G GG S ++ AG + A D A Y NR + + DL + EL M+ GPPC D++SA G R E A LT + ++ V+ENV + + QEA + + GY + +L+AS +G P RRRLFV+ +G Sbjct: 1 MRVVELFCGAGGMSLGLKQAGFEIVNAYDAWPVAVENY--NRNISSHAKVTDLGDILSVVPELLRLAPDMIAGGPPCQDYSSA-------GRREEADNAKLTLAFAILVATVRPAWFVMENVTNAAKSSTWQEARKILKAAGYGITESKLDASRYGVPQSRRRLFVIGRQG 162
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI00115C98BB (DNA cytosine methyltransferase n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=UPI00115C98BB) HSP 1 Score: 68.2 bits (165), Expect = 3.310e-10 Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGR-VYAMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 V+ +L G GG S + AG V A D A +Y N G + +D++ + LA +++ GPPC DF++A GER EG RAALT + ++ V+ENV +A A+ + GY L +L+AS +G P +RRRLFV+ Sbjct: 4 VRTVELFCGAGGMSLGFKRAGFELVQAYDSWDKAVEIYRRNLGGSVWQADLKDIF--RIGPMLATLAPDILIGGPPCQDFSAA-------GERVEGERAALTRAFAMLVAIVRPRWFVMENVPLAARSQAWIDARAMLVKAGYGLTEAKLDASYYGVPQRRRRLFVI 161
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001FEF2595 (DNA cytosine methyltransferase n=2 Tax=Chelativorans sp. ZYF759 TaxID=2692213 RepID=UPI001FEF2595) HSP 1 Score: 64.3 bits (155), Expect = 7.370e-9 Identity = 53/167 (31.74%), Postives = 78/167 (46.71%), Query Frame = 1 Query: 25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519 ++ +L G GG S ++ AG + A D A Y N G ++ +D++ LA+ MVV GPPC DF+SA G+R E AALT + + V+ENV S +A + + GY L +L+AS +G P R+RLFV+ Sbjct: 58 MRAVELFCGAGGMSLGLKRAGFEIIQAYDAWRPAVEAYRRNVGPHVWQVDLKDIF--RFGPMLASLSPDMVVGGPPCQDFSSA-------GQRVERENAALTRAFAMLVAIARPEWFVMENVARASSSKAWADARGMLVKAGYGLTEAKLDASWYGVPQVRKRLFVI 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGGACCCTGGGCCAGACGCGGTGAAAGTGGCAGACCTCTGTGCCGGback to top protein sequence of jgi.p|Trimin1|164096 >Trimin1|164096|e_gw1.29.14.1 ID=Trimin1|164096|e_gw1.29.14.1|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVYAMDRNAAAKRVYDANRGback to top mRNA from alignment at Contig_29:393712..394242+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_29:393712..394242+ >mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )back to top |