mRNA_9575 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164096
Unique NamemRNA_9575
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA)

HSP 1 Score: 325 bits (834), Expect = 7.000e-112
Identity = 169/178 (94.94%), Postives = 172/178 (96.63%), Query Frame = 1
Query:    1 MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRV-YAMDRNAAAKRVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531
            MGDPGPDAVKV DLCAGIGGFSRAVQMAGGRV YAMDRNAAAK VYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCT+ TSARLVRADKGERREG RAALTPLLVHQLTQMQ+PLVVLENVVSIESMTRGQEAFALARERGYH+CFLRL ASDFGPPYQRRRLFVVMARG
Sbjct:    1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREG-RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARG 177          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.780e-37
Identity = 83/176 (47.16%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    7 DPGPDAVKVADLCAGIGGFSRAVQMAGGRV-YAMDRNAAAKRVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531
            DPGPDA KVADLCAG+GGFSRAVQ+AGGRV YAMD NA+ K +YDANRG GAEL+  DLY  + W  L +SGAG+ V G PC D++SAR V A+KG                                                   YH+ FLR+ ASD GPPY++ RL  V ARG
Sbjct:  440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG---------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAVFARG 564          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A1Q4BBH7_9HYPH (Cytosine-specific methyltransferase n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BBH7_9HYPH)

HSP 1 Score: 74.3 bits (181), Expect = 2.630e-12
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            V+  +L +G GG S  +Q AG  +  A D    A  VY   R +G+ +   DL     +   LAA    ++V GPPC DF++A       GER EG RAALT      +T ++    ++ENV          +A A+    GY L   +L+AS +G P +RRRLFV+
Sbjct:  128 VRTVELFSGAGGMSLGLQRAGCEIIQAYDSWDKAVEVY--RRNIGSHVWQADLKDIFRIGPMLAALAPDLIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVTIVRPKWFLMENVPLAARSQAWTDARAMLVNAGYGLTESKLDASLYGVPQRRRRLFVI 285          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI0007DAB334 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucella pseudogrignonensis TaxID=419475 RepID=UPI0007DAB334)

HSP 1 Score: 71.2 bits (173), Expect = 2.560e-11
Identity = 57/167 (34.13%), Postives = 80/167 (47.90%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            ++  DL  G GG S  +Q AG  +  A D    A   Y   R VG+ + T DL     +   LA+    M+  GPPC D++ A       GERREG  A++T      +T  +    ++ENV          EA A+  + GY L   +L+AS +G P  R+RLFVV
Sbjct:    1 MRAIDLFCGAGGMSLGLQNAGFEIIQAYDAWEPAVATY--RRNVGSHVWTHDLNDILGVGSMLASLQPDMIAGGPPCQDYSVA-------GERREGKNASMTKAFAMLVTIARPKWFLMENVEQARKSRAWAEARAMLVKAGYGLTECKLDASYYGVPQARKRLFVV 158          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A336JXU6_9BRAD (DNA (cytosine-5-)-methyltransferase n=1 Tax=Rhodopseudomonas pentothenatexigens TaxID=999699 RepID=A0A336JXU6_9BRAD)

HSP 1 Score: 71.2 bits (173), Expect = 2.750e-11
Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAG-GRVYAMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            ++  +L AG GG S  +  AG   + A D    A  VY  N G    ++  +D++   +   +A+    M+V GPPC DF++A       GER EG RAALT      +   +   +++ENV          ++ A+  + GY L   RL+AS +G P +RRRLFVV
Sbjct:    1 MRAVELFAGAGGMSLGLMRAGIDVIQAYDSWKPAIDVYRRNVGPHVWQMDLKDIF--HVGPMIASLAPDMIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVVIARPEWILMENVPLAARSQSWVDSRAIIVKAGYGLTEARLDASFYGVPQRRRRLFVV 158          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001CFFF0BA (DNA cytosine methyltransferase n=1 Tax=Neorhizobium sp. T786 TaxID=2883104 RepID=UPI001CFFF0BA)

HSP 1 Score: 70.1 bits (170), Expect = 7.100e-11
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELST-RDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            ++V +L +G GG S  +Q AG  +  A D    A   Y+ N G  A ++  +DL +  +  E+ +    ++  GPPC D++SA       G R+E   A LT      ++ ++    ++ENV+        +EA  L +  GY     R+NAS +G P  RRRLFV+
Sbjct:    1 MRVVELFSGAGGMSLGLQQAGFEILRAYDAWPVAVENYNRNIGNHAVIADLKDLLS--IVPEILSLTPDLICGGPPCQDYSSA-------GNRKEADNARLTMAFAMIVSIVKPQWFMMENVIGCAKSATWREARMLLKRAGYGFTESRINASHYGVPQSRRRLFVI 158          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001CC903FC (DNA cytosine methyltransferase n=1 Tax=Mesorhizobium sp. ESP7-2 TaxID=2876622 RepID=UPI001CC903FC)

HSP 1 Score: 70.1 bits (170), Expect = 7.270e-11
Identity = 59/174 (33.91%), Postives = 84/174 (48.28%), Query Frame = 1
Query:    4 GDPGPDAVKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            G+ G   V+  +L AG GG S  ++ AG  V  A D  A A  VY  N G    +   +D++   +   + A    ++  GPPC DF+SA       GER EG RAALT      +   +    ++ENV          +A A+  + GY L   +L+AS +G P  R+RLFVV
Sbjct:   21 GNEGVCRVRAVELFAGAGGMSLGLKRAGFEVVQAYDSWAPAVEVYRRNLGPHIWQADLKDIF--HVGPMITALAPDIICGGPPCQDFSSA-------GERIEGERAALTRAFAMLVCIARPSWFLMENVPRAAQSQAWADARAMLVKAGYGLTESKLDASFYGVPQIRKRLFVV 185          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: A0A1H6H0Z6_9HYPH (Cytosine-specific methyltransferase n=2 Tax=Rhizobium sp. NFR12 TaxID=1566261 RepID=A0A1H6H0Z6_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 1.790e-10
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGAELSTRDLYTS-EMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVVMARG 531
            ++V +L  G GG S  ++ AG  +  A D    A   Y  NR + +     DL     +  EL      M+  GPPC D++SA       G R E   A LT      +  ++    V+ENV +    +  QEA  + +  GY +   +L+AS +G P  RRRLFV+  +G
Sbjct:    1 MRVVELFCGAGGMSLGLKQAGFEIVNAYDAWPVAVENY--NRNISSHAKVTDLGDILSVVPELLRLAPDMIAGGPPCQDYSSA-------GRREEADNAKLTLAFAILVATVRPAWFVMENVTNAAKSSTWQEARKILKAAGYGITESKLDASRYGVPQSRRRLFVIGRQG 162          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI00115C98BB (DNA cytosine methyltransferase n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=UPI00115C98BB)

HSP 1 Score: 68.2 bits (165), Expect = 3.310e-10
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGR-VYAMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            V+  +L  G GG S   + AG   V A D    A  +Y  N G    +   +D++   +   LA     +++ GPPC DF++A       GER EG RAALT      +  ++    V+ENV          +A A+  + GY L   +L+AS +G P +RRRLFV+
Sbjct:    4 VRTVELFCGAGGMSLGFKRAGFELVQAYDSWDKAVEIYRRNLGGSVWQADLKDIF--RIGPMLATLAPDILIGGPPCQDFSAA-------GERVEGERAALTRAFAMLVAIVRPRWFVMENVPLAARSQAWIDARAMLVKAGYGLTEAKLDASYYGVPQRRRRLFVI 161          
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Match: UPI001FEF2595 (DNA cytosine methyltransferase n=2 Tax=Chelativorans sp. ZYF759 TaxID=2692213 RepID=UPI001FEF2595)

HSP 1 Score: 64.3 bits (155), Expect = 7.370e-9
Identity = 53/167 (31.74%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVY-AMDRNAAAKRVYDANRGVGA-ELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERREGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYHLCFLRLNASDFGPPYQRRRLFVV 519
            ++  +L  G GG S  ++ AG  +  A D    A   Y  N G    ++  +D++       LA+    MVV GPPC DF+SA       G+R E   AALT      +   +    V+ENV    S     +A  +  + GY L   +L+AS +G P  R+RLFV+
Sbjct:   58 MRAVELFCGAGGMSLGLKRAGFEIIQAYDAWRPAVEAYRRNVGPHVWQVDLKDIF--RFGPMLASLSPDMVVGGPPCQDFSSA-------GQRVERENAALTRAFAMLVAIARPEWFVMENVARASSSKAWADARGMLVKAGYGLTEAKLDASWYGVPQVRKRLFVI 215          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164096 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z872_9STRA7.000e-11294.94S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZ35_9STRA1.780e-3747.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Q4BBH7_9HYPH2.630e-1235.33Cytosine-specific methyltransferase n=1 Tax=Rhizob... [more]
UPI0007DAB3342.560e-1134.13DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucel... [more]
A0A336JXU6_9BRAD2.750e-1133.53DNA (cytosine-5-)-methyltransferase n=1 Tax=Rhodop... [more]
UPI001CFFF0BA7.100e-1131.14DNA cytosine methyltransferase n=1 Tax=Neorhizobiu... [more]
UPI001CC903FC7.270e-1133.91DNA cytosine methyltransferase n=1 Tax=Mesorhizobi... [more]
A0A1H6H0Z6_9HYPH1.790e-1030.99Cytosine-specific methyltransferase n=2 Tax=Rhizob... [more]
UPI00115C98BB3.310e-1032.93DNA cytosine methyltransferase n=1 Tax=Rhodopseudo... [more]
UPI001FEF25957.370e-931.74DNA cytosine methyltransferase n=2 Tax=Chelativora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:393712..394242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164096|e_gw1.29.14.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558,ko:K07486
EC2.1.1.37
Preferred namedcm
DescriptionDNA (cytosine-5-)-methyltransferase activity
COG categoryL
Max annot lvl2|Bacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria
Evalue6.97e-12
Seed ortholog1122973.KB904238_gene454
Hectar predicted targeting categoryother localisation
TranscriptId164418
TrackFilteredModels1
ProteinId164096
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164096gene_9575Tribonema minus UTEX_B_3156 geneContig_29 393712..394242 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9575_1exon_9575_1Tribonema minus UTEX_B_3156 exonContig_29 393712..394242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9575CDS_9575Tribonema minus UTEX_B_3156 CDSContig_29 393712..394242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164096Trimin1|164096|e_gw1.29.14.1Tribonema minus UTEX_B_3156 polypeptideContig_29 393712..394242 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACCCTGGGCCAGACGCGGTGAAAGTGGCAGACCTCTGTGCCGG
TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTGTATG
CCATGGACCGCAACGCAGCAGCGAAGCGCGTCTACGATGCCAATCGTGGT
GTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTGGGA
GGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTTGTA
CAGATTTCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGTAGA
GAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGACGCA
AATGCAGTTGCCATTGGTGGTGTTGGAAAACGTGGTGTCTATTGAGTCAA
TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT
CTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCAACG
GCGGCGCTTATTTGTAGTCATGGCTCGGGGT
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protein sequence of jgi.p|Trimin1|164096

>Trimin1|164096|e_gw1.29.14.1 ID=Trimin1|164096|e_gw1.29.14.1|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVYAMDRNAAAKRVYDANRG
VGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTDFTSARLVRADKGERR
EGTRAALTPLLVHQLTQMQLPLVVLENVVSIESMTRGQEAFALARERGYH
LCFLRLNASDFGPPYQRRRLFVVMARG
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mRNA from alignment at Contig_29:393712..394242+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCAGACGCGGTGAAAGTGGCAGACCTCTGTGCCGG TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTGTATG CCATGGACCGCAACGCAGCAGCGAAGCGCGTCTACGATGCCAATCGTGGT GTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTGGGA GGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTTGTA CAGATTTCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGTAGA GAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGACGCA AATGCAGTTGCCATTGGTGGTGTTGGAAAACGTGGTGTCTATTGAGTCAA TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT CTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCAACG GCGGCGCTTATTTGTAGTCATGGCTCGGGGT
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Coding sequence (CDS) from alignment at Contig_29:393712..394242+

>mRNA_9575 ID=mRNA_9575|Name=jgi.p|Trimin1|164096|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_29:393712..394242+ (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCAGACGCGGTGAAAGTGGCAGACCTCTGTGCCGG
TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTGTATG
CCATGGACCGCAACGCAGCAGCGAAGCGCGTCTACGATGCCAATCGTGGT
GTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTGGGA
GGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTTGTA
CAGATTTCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGTAGA
GAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGACGCA
AATGCAGTTGCCATTGGTGGTGTTGGAAAACGTGGTGTCTATTGAGTCAA
TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT
CTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCAACG
GCGGCGCTTATTTGTAGTCATGGCTCGGGGT
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