mRNA_9568 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155425
Unique NamemRNA_9568
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A836CFK5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK5_9STRA)

HSP 1 Score: 312 bits (799), Expect = 6.340e-108
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT 441
            QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT
Sbjct:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT 147          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.240e-16
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHR---PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEML 438
            QPPL +Y  V  H  W+++ +VT   E    +P    L A++     P    V ++   +ED+ ++ CA  L  ARS++ SL  +H++  R  YG H    C      + L+   RP+V  Y  G +WAG Y  Y SW+NT EQR EML
Sbjct:  374 QPPLQFYLQVIQHADWDSVDIVTNSQEHDGLNPVIPALQAMVDAGDLPDSVHVHTNRTMEEDLLSMFCADGLALARSTLVSLTGFHSKAKR-VYGPHQ---CNAQFKQLALI---RPEVQAY--GIDWAGEYGVYKSWENTPEQREEML 513          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.550e-13
Identity = 52/153 (33.99%), Postives = 73/153 (47.71%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMVQS---SNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 441
            +PPL +Y  V   R W NI+++T    Q E +P   +L  L  +  +    +     D   D+R +LCA N+V A+SS+  LL+ H++  R    T    G       +  +   RPDV  Y  G EW      YS Y  W NT  QRLEM+T
Sbjct:   39 KPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 186          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.720e-13
Identity = 55/155 (35.48%), Postives = 73/155 (47.10%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLP-----ALLHRPYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWA---GNYSPYSSWQNTYEQRLEMLT 441
            QPPL +Y  V   R W NI+++T    Q E +P   +L       LL  P      +  D   D+R +LCA N+V A+SS+  LL+ H++  R    T    G       +  +   RPDV  Y  G EW      YS Y  W NT  QRLEM+T
Sbjct:  261 QPPLQFYLKVIGSRPWSNISVLTNARIQREFNPTFGVLQELDKQGLLGAP--ANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG---GPFFVDRICLYRPDVEVY--GIEWKTTLNEYSVYDEWINTDAQRLEMIT 408          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.690e-9
Identity = 44/149 (29.53%), Postives = 69/149 (46.31%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHR---PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEML 438
            QPPL +Y  +   + W+ I +VT        +P    L A+      P      +     ED++++LCA +L  A+SS+ + L +H+   R  Y       C +    +  L   RP    Y +  + +G+YS Y  W+NT EQR EML
Sbjct:  252 QPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALPDNVYFHTERSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWR----CNHDLRELARL---RPKTKVYGLQLDRSGSYSVYRHWENTPEQRAEML 393          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.610e-7
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTE-PVEQLEHHPFATLLPALLHRPYV-TMVQSSND--FKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPL--------LVSQRPDVSFYVMGGEWAGN---YSPYSSW 405
            QPPL ++ AV A +KW+ ++++T  P +QL  +P  +++  L  + Y+ T V    D  F  D++T+LCA NL  + S++ +LLL H++  R         GC     T+ L        +  QRP+V  Y  G +W      Y+ Y SW
Sbjct:  396 QPPLGYFLAVIASKKWDYLSVLTSGPDKQL--NPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPW----GCEPQPWTLKLNRFVNASMICLQRPEVQVY--GIDWRTTKDAYTVYDSW 537          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.290e-5
Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWENITLVTE-PVEQLEHHPFATLLPALLHRPYV-TMVQSSND--FKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPL--------LVSQRPDVSFYVMGGEW---AGNYSPYSSW 405
            QPPL ++ AV A +KW+ ++++T  P +QL  +P  +++  L  + ++ T V+   D  F ED++ +LCA +L  + S++ +LLL H++  R         GC     T+ L        +  QRP+V     G +W   +  Y+ Y SW
Sbjct:  271 QPPLGYFLAVIASKKWDYLSVLTSGPDKQL--NPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPW----GCEPQPWTLKLNRFVNASMICLQRPEV----YGIDWRTTSDAYTVYDSW 410          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A7S3EZI5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZI5_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 6.120e-5
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  148 VQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCTNARTTIPLLVSQRPDVSFYVMGGE--WA----GNYSPYSSWQNTYEQRLEMLT 441
            + ++  FKED+  LLCAR+L+ A SS+ SLLL     +R  Y   G   C++           R + S Y+ G    W     G YS   +W N+ EQR EMLT
Sbjct:  357 LSANESFKEDLTQLLCARSLLLADSSLNSLLL-AGSSVRDVYFFSGSVPCSS----YAKHSCGRTNSSLYLQGTRRYWCVAVNGKYSVAVNWLNSEEQRNEMLT 455          
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Match: A0A7S3AYY4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYY4_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 7.240e-5
Identity = 52/178 (29.21%), Postives = 74/178 (41.57%), Query Frame = 1
Query:    1 QPPLSWYAAVFAHRKWEN------ITLVTEP------VEQLEHHPFATLLPALLHR-PYVTMVQSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHG--HAGCTNART-------------TIPLLVSQRPDVSFYVMGGEWA----GNYSPYSSWQNTYEQRLEML 438
            QPPL++Y    AH           + LVT P      V+ L+H        A LH   Y  +V +S+  ++D++ LLCARNLV A SS+ +L +     LR  Y  H   H   T   +             + P    Q    +       W      +YSP S W N+  Q++EML
Sbjct:  129 QPPLAFYLRAMAHALPAPPEPPGVVYLVTSPDLANPVVKLLKHQ-------AQLHALRYKLVVSASSSLQDDLKLLLCARNLVLAASSMGTLFM-DGPRLRKTYSFHHSCHKNTTGQSSYGNVALAPEGQCESAPAWCVQNATCTGAYGVQNWCVHPEQSYSPLSKWNNSDAQQVEML 298          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155425 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CFK5_9STRA6.340e-108100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5K2F3_9PHAE6.240e-1635.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSV7_ECTSI2.550e-1333.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Z0_9PHAE2.720e-1335.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G610_ECTSI7.690e-929.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHC1_ECTSI4.610e-732.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM4_9PHAE1.290e-530.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3EZI5_9EUKA6.120e-536.54Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3AYY4_9EUKA7.240e-529.21Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:338568..339059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155425|gw1.29.100.1
Hectar predicted targeting categoryother localisation
TranscriptId155747
TrackFilteredModels1
ProteinId155425
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155425gene_9568Tribonema minus UTEX_B_3156 geneContig_29 338568..339059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9568_1exon_9568_1Tribonema minus UTEX_B_3156 exonContig_29 338568..338840 +
exon_9568_2exon_9568_2Tribonema minus UTEX_B_3156 exonContig_29 338892..339059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9568CDS_9568Tribonema minus UTEX_B_3156 CDSContig_29 338568..338840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155425Trimin1|155425|gw1.29.100.1Tribonema minus UTEX_B_3156 polypeptideContig_29 338568..339059 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACCACCCCTGAGCTGGTATGCGGCCGTATTTGCACACCGCAAATGGGA
GAATATAACATTGGTGACGGAGCCTGTGGAGCAGTTGGAGCATCATCCCT
TCGCCACGCTGCTCCCTGCACTGCTCCATCGGCCATACGTTACGATGGTT
CAATCCTCAAATGACTTCAAAGAGGATATGCGTACATTGCTCTGTGCGCG
AAATCTGGTGACAGCCAGATCTTCGGTTCAGTCACTTCTCCTGTGGCATA
ACCAGCACCTTCGCTCAGCTTATGGGACGCACGGGCATGCAGGGTGCACA
AATGCGAGGACAACAATCCCACTGTTGGTGTCTCAGCGCCCAGATGTTTC
ATTTTATGTGATGGGCGGCGAATGGGCAGGAAATTACAGTCCATATAGTT
CATGGCAAAACACTTACGAGCAGAGACTTGAGATGCTGACC
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protein sequence of jgi.p|Trimin1|155425

>Trimin1|155425|gw1.29.100.1 ID=Trimin1|155425|gw1.29.100.1|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
QPPLSWYAAVFAHRKWENITLVTEPVEQLEHHPFATLLPALLHRPYVTMV
QSSNDFKEDMRTLLCARNLVTARSSVQSLLLWHNQHLRSAYGTHGHAGCT
NARTTIPLLVSQRPDVSFYVMGGEWAGNYSPYSSWQNTYEQRLEMLT
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mRNA from alignment at Contig_29:338568..339059+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )
CAACCACCCCTGAGCTGGTATGCGGCCGTATTTGCACACCGCAAATGGGA GAATATAACATTGGTGACGGAGCCTGTGGAGCAGTTGGAGCATCATCCCT TCGCCACGCTGCTCCCTGCACTGCTCCATCGGCCATACGTTACGATGGTT CAATCCTCAAATGACTTCAAAGAGGATATGCGTACATTGCTCTGTGCGCG AAATCTGGTGACAGCCAGATCTTCGGTTCAGTCACTTCTCCTGTGGCATA ACCAGCACCTTCGCTCAGCTTATGTAGAGGGATTGCTCATAACAACAGAA CGGTATGGCGAACAGCAGCAGGAGGGGACGCACGGGCATGCAGGGTGCAC AAATGCGAGGACAACAATCCCACTGTTGGTGTCTCAGCGCCCAGATGTTT CATTTTATGTGATGGGCGGCGAATGGGCAGGAAATTACAGTCCATATAGT TCATGGCAAAACACTTACGAGCAGAGACTTGAGATGCTGACC
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Coding sequence (CDS) from alignment at Contig_29:338568..339059+

>mRNA_9568 ID=mRNA_9568|Name=jgi.p|Trimin1|155425|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_29:338568..339059+ (Tribonema minus UTEX_B_3156 )
CAACCACCCCTGAGCTGGTATGCGGCCGTATTTGCACACCGCAAATGGGA
GAATATAACATTGGTGACGGAGCCTGTGGAGCAGTTGGAGCATCATCCCT
TCGCCACGCTGCTCCCTGCACTGCTCCATCGGCCATACGTTACGATGGTT
CAATCCTCAAATGACTTCAAAGAGGATATGCGTACATTGCTCTGTGCGCG
AAATCTGGTGACAGCCAGATCTTCGGTTCAGTCACTTCTCCTGTGGCATA
ACCAGCACCTTCGCTCAGCTTATGGGACGCACGGGCATGCAGGGTGCACA
AATGCGAGGACAACAATCCCACTGTTGGTGTCTCAGCGCCCAGATGTTTC
ATTTTATGTGATGGGCGGCGAATGGGCAGGAAATTACAGTCCATATAGTT
CATGGCAAAACACTTACGAGCAGAGACTTGAGATGCTGACC
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